1 <?xml version="1.0" encoding="ISO-8859-1"?>
3 experimentPath : Absolute path to the folder containing all the experiment data
4 imageExtension : Extension of the image files. There is no default value, has to be specified.
5 commonRoot : The beginning of the image file names has to be the same. The images should be noted "commonRoot"+"timePoint"+"imageExtension"
8 inputFolder : Folder containing the input image sequence
9 numberOfTimePoints : Number of time points in the sequence. The time points should be comprised between 1 and numberOfTimePoints.
10 maskImage : Specify a mask image if you want to process STMS only with the mask pixel values. It has to be stored in the "Mask" folder and to be a binary image (0/1). Set tu null if no mask.
13 outputFolder : Folder containing the output image sequence
14 commonRoot : The beginning of the image file names has to be the same. The images will be saved as "commonRoot"+"timePoint"+"scaleParameters"+"imageExtension"
18 experimentPath="/run/media/mure/HDD/Recherche/These/Repositories/Mure/Dev/Cpp/itkSTMS/Data/Images/"
19 imageExtension=".nii.gz" >
28 outputFolder="Simu_Outputs/"
29 commonRoot="Simu_STMS_"