3 # File : itkSTMS_XMLFileParser.hxx
4 # ( C++ header file - STMS )
6 # Description : STMS lib that implements the STMS filter and clustering.
7 # This file is a part of the STMS Library project.
8 # ( https://www.creatis.insa-lyon.fr/site7/fr/realisations )
10 # [1] S. Mure, Grenier, T., Meier, S., Guttmann, R. G., et Benoit-Cattin, H.,
11 # « Unsupervised spatio-temporal filtering of image sequences. A mean-shift specification »,
12 # Pattern Recognition Letters, vol. 68, Part 1, p. 48 - 55, 2015.
14 # Copyright : Thomas GRENIER - Simon MURE
15 # ( https://www.creatis.insa-lyon.fr/~grenier/ )
18 # ( http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.txt )
20 # This software is governed by the CeCILL license under French law and
21 # abiding by the rules of distribution of free software. You can use,
22 # modify and/ or redistribute the software under the terms of the CeCILL
23 # license as circulated by CEA, CNRS and INRIA at the following URL
24 # "http://www.cecill.info".
26 # As a counterpart to the access to the source code and rights to copy,
27 # modify and redistribute granted by the license, users are provided only
28 # with a limited warranty and the software's author, the holder of the
29 # economic rights, and the successive licensors have only limited
32 # In this respect, the user's attention is drawn to the risks associated
33 # with loading, using, modifying and/or developing or reproducing the
34 # software by the user in light of its specific status of free software,
35 # that may mean that it is complicated to manipulate, and that also
36 # therefore means that it is reserved for developers and experienced
37 # professionals having in-depth computer knowledge. Users are therefore
38 # encouraged to load and test the software's suitability as regards their
39 # requirements in conditions enabling the security of their systems and/or
40 # data to be ensured and, more generally, to use and operate it in the
41 # same conditions as regards security.
43 # The fact that you are presently reading this means that you have had
44 # knowledge of the CeCILL license and that you accept its terms.
47 /* Please don't forget to cite our work :
49 title = {Unsupervised spatio-temporal filtering of image sequences. A mean-shift specification},
50 journal = {Pattern Recognition Letters},
51 volume = {68, Part 1},
55 doi = {http://dx.doi.org/10.1016/j.patrec.2015.07.021},
56 url = {http://www.sciencedirect.com/science/article/pii/S0167865515002305},
57 author = {S. Mure and T Grenier and Meier, S. and Guttmann, R.G. and H. Benoit-Cattin}
60 #ifndef itkSTMS_XMLFileParser_HXX
61 #define itkSTMS_XMLFileParser_HXX
63 #include "itkSTMS_XMLFileParser.h"
67 itkSTMS_XMLFileParser::itkSTMS_XMLFileParser()
69 xmlParams.experimentPath = "";
70 xmlParams.imageExtension = "";
71 xmlParams.outputImageExtension = "";
72 xmlParams.inputCommonRoot = "";
73 xmlParams.inputFolder = "";
74 xmlParams.maskImage = "";
75 xmlParams.outputFolder = "";
76 xmlParams.outputCommonRoot = "";
80 void itkSTMS_XMLFileParser::Update()
82 parser = InputType::New();
83 parser->SetFileName( this->fileName );
86 DomObject = parser->GetOutput();
87 if ( DomObject->GetName() != "STMS_ProcessInfo" )
89 std::cout << std::endl << std::endl << "Unrecognized input XML document! STMS_ProcessInfo expected" << std::endl << std::endl;
90 std::exit( EXIT_FAILURE );
93 // Read common parameters
94 xmlParams.experimentPath = DomObject->GetAttribute( "experimentPath" );
95 if ( xmlParams.experimentPath == "" )
97 std::cout << std::endl << std::endl << "experimentPath not found" << std::endl << std::endl;
98 std::exit( EXIT_FAILURE );
101 xmlParams.imageExtension = DomObject->GetAttribute( "imageExtension" );
102 if ( xmlParams.imageExtension == "" )
104 std::cout << std::endl << std::endl << "imageExtension not found" << std::endl << std::endl;
105 std::exit( EXIT_FAILURE );
108 xmlParams.outputImageExtension = DomObject->GetAttribute( "outputImageExtension" );
109 if ( xmlParams.outputImageExtension == "" )
111 std::cout << std::endl << std::endl << "outputImageExtension not found" << std::endl << std::endl;
112 std::exit( EXIT_FAILURE );
115 // Read input parameters
116 listInput = DomObject->GetChild( "listInput" );
117 xmlParams.inputFolder = listInput->GetAttribute( "inputFolder" );
118 if ( xmlParams.inputFolder == "" )
120 std::cout << std::endl << std::endl << "inputFolder not found" << std::endl << std::endl;
121 std::exit( EXIT_FAILURE );
124 xmlParams.inputCommonRoot = listInput->GetAttribute( "commonRoot" );
125 if ( xmlParams.inputCommonRoot == "" )
127 std::cout << std::endl << std::endl << "inputCommonRoot not found" << std::endl << std::endl;
128 std::exit( EXIT_FAILURE );
131 xmlParams.maskImage = listInput->GetAttribute( "maskImage" );
132 if ( xmlParams.maskImage == "" )
134 std::cout << std::endl << std::endl << "maskImage not found" << std::endl << std::endl;
135 std::exit( EXIT_FAILURE );
138 // Read output parameters
139 listOutput = DomObject->GetChild( "listOutput" );
140 xmlParams.outputFolder = listOutput->GetAttribute( "outputFolder" );
141 if ( xmlParams.outputFolder == "" )
143 std::cout << std::endl << std::endl << "outputFolder not found" << std::endl << std::endl;
144 std::exit( EXIT_FAILURE );
147 xmlParams.outputCommonRoot = listOutput->GetAttribute( "commonRoot" );
148 if ( xmlParams.outputCommonRoot == "" )
150 std::cout << std::endl << std::endl << "outputCommonRoot not found" << std::endl << std::endl;
151 std::exit( EXIT_FAILURE );
154 } // end of namespace itkSTMS
155 #endif // itkSTMS_XMLFileParser_HXX