packages/vtk/src/bbvtkImageBoundaries.cxx

   1 /*
   2  # ---------------------------------------------------------------------
   3  #
   4  # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   5  #                        pour la SantÈ)
   6  # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   7  # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   8  # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   9  #
  10  #  This software is governed by the CeCILL-B license under French law and
  11  #  abiding by the rules of distribution of free software. You can  use,
  12  #  modify and/ or redistribute the software under the terms of the CeCILL-B
  13  #  license as circulated by CEA, CNRS and INRIA at the following URL
  14  #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  15  #  or in the file LICENSE.txt.
  16  #
  17  #  As a counterpart to the access to the source code and  rights to copy,
  18  #  modify and redistribute granted by the license, users are provided only
  19  #  with a limited warranty  and the software's author,  the holder of the
  20  #  economic rights,  and the successive licensors  have only  limited
  21  #  liability.
  22  #
  23  #  The fact that you are presently reading this means that you have had
  24  #  knowledge of the CeCILL-B license and that you accept its terms.
  25  # ------------------------------------------------------------------------ */
  26
  27
  28 //=====
  29 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
  30 //=====
  31 #include "bbvtkImageBoundaries.h"
  32 #include "bbvtkPackage.h"
  33 #include "creaVtk_MACROS.h"
  34
  35 #include <omp.h>
  36 namespace bbvtk
  37 {
  38
  39 BBTK_ADD_BLACK_BOX_TO_PACKAGE(vtk,ImageBoundaries)
  40 BBTK_BLACK_BOX_IMPLEMENTATION(ImageBoundaries,bbtk::AtomicBlackBox);
  41 //=====
  42 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
  43 //=====
  44 void ImageBoundaries::Process()
  45 {
  46         if (bbGetInputIn()!=NULL)
  47         {
  48                 int ext[6];
  49                 bbGetInputIn()->GetWholeExtent(ext);
  50                 int maxX        = ext[1]-ext[0]+1;
  51                 int maxY        = ext[3]-ext[2]+1;
  52                 int maxZ        = ext[5]-ext[4]+1;
  53                 int bXMax       = 0;
  54                 int bYMax       = 0;
  55                 int bZMax       = 0;
  56                 int bXMin       = maxX-1;
  57                 int bYMin       = maxY-1;
  58                 int bZMin       = maxZ-1;
  59
  60 /*
  61                 #pragma omp parallel for
  62                 for (int i=0 ; i<maxX ; i++)
  63                 {
  64                         int j;
  65                         int k;
  66                         for (j=0 ; j<maxY ; j++)
  67                         {
  68                                 for (k=0 ; k<maxZ ; k++)
  69                                 {
  70                                         double value = bbGetInputIn()->GetScalarComponentAsDouble(i, j, k,0);
  71                                         if ( (value>=bbGetInputLowerValue()) && (value<=bbGetInputUpperValue())  )
  72                                         {
  73                                                 if (i<bXMin) bXMin=i;
  74                                                 if (j<bYMin) bYMin=j;
  75                                                 if (k<bZMin) bZMin=k;
  76                                                 if (i>bXMax) bXMax=i;
  77                                                 if (j>bYMax) bYMax=j;
  78                                                 if (k>bZMax) bZMax=k;
  79                                         }
  80                                 } // for k
  81                         } // for j
  82                 } // i
  83 */
  84
  85                 DEF_POINTER_IMAGE_VTK_CREA(vI,ssI,pI,stI,bbGetInputIn())
  86                 int i;
  87                 int j;
  88                 long int index=0;
  89                 for (int k=0 ; k<maxZ ; k++)
  90                 {
  91                         for (j=0 ; j<maxY ; j++)
  92                         {
  93                                 for (i=0 ; i<maxX ; i++)
  94                                 {
  95 //                                      double value = bbGetInputIn()->GetScalarComponentAsDouble(i, j, k,0);
  96                                         GETVALUE2_VTK_CREA(vI,pI,stI,index)
  97                                         index++;
  98                                         if ( (vI>=bbGetInputLowerValue()) && (vI<=bbGetInputUpperValue())  )
  99                                         {
 100                                                 if (i<bXMin) bXMin=i;
 101                                                 if (j<bYMin) bYMin=j;
 102                                                 if (k<bZMin) bZMin=k;
 103                                                 if (i>bXMax) bXMax=i;
 104                                                 if (j>bYMax) bYMax=j;
 105                                                 if (k>bZMax) bZMax=k;
 106                                         }
 107                                 } // for k
 108                         } // for j
 109                 } // i
 110                 std::vector<int> tmpIndex;
 111                 std::vector<int> tmpSize;
 112                 if (bXMin>bXMax){
 113                         tmpIndex.push_back(0);
 114                         tmpIndex.push_back(0);
 115                         tmpIndex.push_back(0);
 116                         tmpSize.push_back(1);
 117                         tmpSize.push_back(1);
 118                         tmpSize.push_back(1);
 119                 } else {
 120                         tmpIndex.push_back(bXMin);
 121                         tmpIndex.push_back(bYMin);
 122                         tmpIndex.push_back(bZMin);
 123                         tmpSize.push_back(bXMax-bXMin+1);
 124                         tmpSize.push_back(bYMax-bYMin+1);
 125                         tmpSize.push_back(bZMax-bZMin+1);
 126                 }
 127                 bbSetOutputIndex(tmpIndex);
 128                 bbSetOutputSize(tmpSize);
 129         } else {
 130                 printf("bbtk warnning: bbtk:vtk:ImageBoundaries box, Input image (In) not initialized..\n");
 131         }
 132 }
 133 //=====
 134 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 135 //=====
 136 void ImageBoundaries::bbUserSetDefaultValues()
 137 {
 138
 139
 140 //  SET HERE THE DEFAULT INPUT/OUTPUT VALUES OF YOUR BOX
 141    bbSetInputIn(NULL);
 142         bbSetInputLowerValue(0);
 143         bbSetInputUpperValue(5000);
 144
 145         std::vector<int> tmpIndex;
 146         tmpIndex.push_back(0);
 147         tmpIndex.push_back(0);
 148         tmpIndex.push_back(0);
 149
 150         std::vector<int> tmpSize;
 151         tmpSize.push_back(1);
 152         tmpSize.push_back(1);
 153         tmpSize.push_back(1);
 154
 155         bbSetOutputIndex(tmpIndex);
 156         bbSetOutputSize(tmpSize);
 157 }
 158 //=====
 159 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 160 //=====
 161 void ImageBoundaries::bbUserInitializeProcessing()
 162 {
 163
 164 //  THE INITIALIZATION METHOD BODY :
 165 //    Here does nothing
 166 //    but this is where you should allocate the internal/output pointers
 167 //    if any
 168
 169
 170 }
 171 //=====
 172 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 173 //=====
 174 void ImageBoundaries::bbUserFinalizeProcessing()
 175 {
 176
 177 //  THE FINALIZATION METHOD BODY :
 178 //    Here does nothing
 179 //    but this is where you should desallocate the internal/output pointers
 180 //    if any
 181
 182 }
 183 }
 184 // EO namespace bbvtk
 185
 186