Issue #1959 - New black box to calculate the minimum, maximum, std

dev and mean intensity of an image.

diff --git a/packages/itk/src/bbitkImageStatistics.cxx b/packages/itk/src/bbitkImageStatistics.cxx
new file mode 100644 (file)
index 0000000..3ed5384
--- /dev/null
+++ b/packages/itk/src/bbitkImageStatistics.cxx
@@ -0,0 +1,95 @@
+
+/*
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ #                        pour la SantÈ)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ #  This software is governed by the CeCILL-B license under French law and
+ #  abiding by the rules of distribution of free software. You can  use,
+ #  modify and/ or redistribute the software under the terms of the CeCILL-B
+ #  license as circulated by CEA, CNRS and INRIA at the following URL
+ #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ #  or in the file LICENSE.txt.
+ #
+ #  As a counterpart to the access to the source code and  rights to copy,
+ #  modify and redistribute granted by the license, users are provided only
+ #  with a limited warranty  and the software's author,  the holder of the
+ #  economic rights,  and the successive licensors  have only  limited
+ #  liability.
+ #
+ #  The fact that you are presently reading this means that you have had
+ #  knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------ */
+
+
+/*=========================================================================
+  Program:   bbtk
+  Module:    $RCSfile: bbitkImageStatistics.h,v $
+  Language:  C++
+  Date:      $Date: 2013/03/27 $
+  Version:   $Revision: 1.0 $
+  Modified by: Ricardo A Corredor (RaC)
+=========================================================================*/
+
+
+/**
+ * \file
+ * \brief class ITKImageStatistics : generic ITKImage statistics
+ */
+/**
+ * \class bbtk::ITKImageStatistics
+ * \brief Generic ITKImage statictis
+ */
+
+#ifdef _USE_ITK_
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+#include "bbitkImageStatistics.h"
+#include "bbitkPackage.h"
+namespace bbitk
+{
+
+BBTK_ADD_BLACK_BOX_TO_PACKAGE(itk,ImageStatistics)
+BBTK_BLACK_BOX_IMPLEMENTATION(ImageStatistics,bbtk::AtomicBlackBox);
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+void ImageStatistics::bbUserSetDefaultValues()
+{
+       bbSetOutputMin(0);
+       bbSetOutputMax(0);
+       bbSetOutputMean(0);
+       bbSetOutputStdDev(0);
+
+  
+}
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+void ImageStatistics::bbUserInitializeProcessing()
+{
+
+
+
+  
+}
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+void ImageStatistics::bbUserFinalizeProcessing()
+{
+  
+}
+}
+// EO namespace bbitk
+#endif
+

diff --git a/packages/itk/src/bbitkImageStatistics.h b/packages/itk/src/bbitkImageStatistics.h
new file mode 100644 (file)
index 0000000..9fa0049
--- /dev/null
+++ b/packages/itk/src/bbitkImageStatistics.h
@@ -0,0 +1,147 @@
+/*
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ #                        pour la SantÈ)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ #  This software is governed by the CeCILL-B license under French law and
+ #  abiding by the rules of distribution of free software. You can  use,
+ #  modify and/ or redistribute the software under the terms of the CeCILL-B
+ #  license as circulated by CEA, CNRS and INRIA at the following URL
+ #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ #  or in the file LICENSE.txt.
+ #
+ #  As a counterpart to the access to the source code and  rights to copy,
+ #  modify and redistribute granted by the license, users are provided only
+ #  with a limited warranty  and the software's author,  the holder of the
+ #  economic rights,  and the successive licensors  have only  limited
+ #  liability.
+ #
+ #  The fact that you are presently reading this means that you have had
+ #  knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------ */
+
+
+/*=========================================================================
+  Program:   bbtk
+  Module:    $RCSfile: bbitkImageStatistics.h,v $
+  Language:  C++
+  Date:      $Date: 2013/03/27 $
+  Version:   $Revision: 1.0 $
+  Modified by: Ricardo A Corredor (RaC)
+=========================================================================*/
+
+
+/**
+ * \file
+ * \brief class ITKImageStatistics : generic ITKImage statistics
+ */
+/**
+ * \class bbtk::ITKImageStatistics
+ * \brief Generic ITKImage statictis
+ */
+
+#ifdef _USE_ITK_
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+#ifndef __bbitkImageStatistics_h_INCLUDED__
+#define __bbitkImageStatistics_h_INCLUDED__
+//#include "bbitk_EXPORT.h"
+#include "bbtkAtomicBlackBox.h"
+
+#include "iostream"
+
+#include "bbitkImage.h"
+
+#include <itkStatisticsImageFilter.h>
+
+
+namespace bbitk
+{
+
+class /*bbitk_EXPORT*/ ImageStatistics
+ : 
+   public bbtk::AtomicBlackBox
+{
+  BBTK_BLACK_BOX_INTERFACE(ImageStatistics,bbtk::AtomicBlackBox);
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+  BBTK_DECLARE_INPUT(In,bbitk::anyImagePointer);
+  BBTK_DECLARE_OUTPUT(Min,double);
+  BBTK_DECLARE_OUTPUT(Max,double);
+  BBTK_DECLARE_OUTPUT(Mean,double);
+  BBTK_DECLARE_OUTPUT(StdDev,double);
+  BBTK_PROCESS(Process);
+private:
+  inline void Process();
+  template <class T> void ProcessTemplated();
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+};
+
+BBTK_BEGIN_DESCRIBE_BLACK_BOX(ImageStatistics,bbtk::AtomicBlackBox);
+BBTK_NAME("ImageStatistics");
+BBTK_AUTHOR("Ricardo A Corredor");
+BBTK_DESCRIPTION("Basic Image Statistics (minimim, maximum, mean, standard deviation)");
+BBTK_CATEGORY("");
+BBTK_INPUT(ImageStatistics,In,"Input image. Can be any itk::Image<T,D>*",bbitk::anyImagePointer,"");
+BBTK_OUTPUT(ImageStatistics,Min,"Image minimum",double,"");
+BBTK_OUTPUT(ImageStatistics,Max,"Image maximum",double,"");
+BBTK_OUTPUT(ImageStatistics,Mean,"Image mean",double,"");
+BBTK_OUTPUT(ImageStatistics,StdDev,"Image standard deviation",double,"");
+BBTK_END_DESCRIBE_BLACK_BOX(ImageStatistics);
+//===== 
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//===== 
+
+
+//===================================================
+void ImageStatistics::Process()
+{
+       bbtk::TypeInfo t = bbGetInputIn().type();
+       BBTK_TEMPLATE_ITK_IMAGE_SWITCH(t, this->ProcessTemplated);
+}
+//===================================================
+
+
+//===================================================
+template <class ImageType>
+void ImageStatistics::ProcessTemplated()
+{
+       bbtkDebugMessageInc("Core",9,"bbitk::ImageStatistics::Process<"<<bbtk::TypeName<ImageType>()<<">()"<<std::endl);
+
+       typedef itk::StatisticsImageFilter<ImageType> StatisticsImageFilterType;
+       typename StatisticsImageFilterType::Pointer statisticsImageFilter = StatisticsImageFilterType::New ();
+
+       // Input
+       ImageType* in = this->bbGetInputIn().get<ImageType*>();
+
+       statisticsImageFilter->SetInput(in);
+       statisticsImageFilter->Update();
+
+       std::cout << "Mean: " << statisticsImageFilter->GetMean() << std::endl;
+       std::cout << "Std.: " << statisticsImageFilter->GetSigma() << std::endl;
+       std::cout << "Min: " << statisticsImageFilter->GetMinimum() << std::endl;
+       std::cout << "Max: " << statisticsImageFilter->GetMaximum() << std::endl;
+
+       bbSetOutputMin((double)statisticsImageFilter->GetMinimum());
+       bbSetOutputMax((double)statisticsImageFilter->GetMaximum());
+       bbSetOutputMean((double)statisticsImageFilter->GetMean());
+       bbSetOutputStdDev((double)statisticsImageFilter->GetSigma());
+
+       bbtkDebugDecTab("Core",9);
+}
+//===================================================
+
+}
+// EO namespace bbitk
+
+#endif // __bbitkImageStatistics_h_INCLUDED__
+
+#endif  // _USE_ITK_