itk/clitkLabelImageOverlapMeasureFilter.h

   1 /*=========================================================================
   2   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
   3
   4   Authors belong to:
   5   - University of LYON              http://www.universite-lyon.fr/
   6   - Léon Bérard cancer center       http://www.centreleonberard.fr
   7   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
   8
   9   This software is distributed WITHOUT ANY WARRANTY; without even
  10   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  11   PURPOSE.  See the copyright notices for more information.
  12
  13   It is distributed under dual licence
  14
  15   - BSD        See included LICENSE.txt file
  16   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  17   ===========================================================================**/
  18
  19 #ifndef CLITKLABELIMAGEOVERLAPMEASUREFILTER_H
  20 #define CLITKLABELIMAGEOVERLAPMEASUREFILTER_H
  21
  22 // clitk
  23 #include "clitkFilterBase.h"
  24 #include "clitkCropLikeImageFilter.h"
  25 #include "clitkSegmentationUtils.h"
  26
  27 // itk
  28 #include <itkImageToImageFilter.h>
  29 #include <itkLabelStatisticsImageFilter.h>
  30 #include <itkLabelOverlapMeasuresImageFilter.h>
  31
  32 #include <iomanip>
  33
  34 namespace clitk {
  35
  36   //--------------------------------------------------------------------
  37   /*
  38     Analyze the relative position of a Target (mask image) according
  39     to some Object, in a given Support. Indicate the main important
  40     position of this Target according the Object.
  41   */
  42   //--------------------------------------------------------------------
  43
  44   template <class ImageType>
  45   class LabelImageOverlapMeasureFilter:
  46     public virtual FilterBase,
  47     public itk::ImageToImageFilter<ImageType, ImageType>
  48   {
  49
  50   public:
  51     /** Standard class typedefs. */
  52     typedef itk::ImageToImageFilter<ImageType, ImageType>      Superclass;
  53     typedef LabelImageOverlapMeasureFilter<ImageType>          Self;
  54     typedef itk::SmartPointer<Self>                            Pointer;
  55     typedef itk::SmartPointer<const Self>                      ConstPointer;
  56
  57     /** Method for creation through the object factory. */
  58     itkNewMacro(Self);
  59
  60     /** Run-time type information (and related methods). */
  61     itkTypeMacro(LabelImageOverlapMeasureFilter, ImageToImageFilter);
  62
  63     /** Some convenient typedefs. */
  64     typedef typename ImageType::ConstPointer ImageConstPointer;
  65     typedef typename ImageType::Pointer      ImagePointer;
  66     typedef typename ImageType::RegionType   RegionType;
  67     typedef typename ImageType::PixelType    PixelType;
  68     typedef typename ImageType::SpacingType  SpacingType;
  69     typedef typename ImageType::SizeType     SizeType;
  70     typedef typename ImageType::IndexType    IndexType;
  71     typedef typename ImageType::PointType    PointType;
  72
  73     /** ImageDimension constants */
  74     itkStaticConstMacro(ImageDimension, unsigned int, ImageType::ImageDimension);
  75     FILTERBASE_INIT;
  76
  77     // Options
  78     itkGetConstMacro(BackgroundValue, PixelType);
  79     //itkSetMacro(BackgroundValue, PixelType);
  80
  81     itkGetConstMacro(Label1, PixelType);
  82     itkSetMacro(Label1, PixelType);
  83
  84     itkGetConstMacro(Label2, PixelType);
  85     itkSetMacro(Label2, PixelType);
  86
  87     itkSetMacro(VerboseFlag, bool);
  88     itkGetConstMacro(VerboseFlag, bool);
  89     itkBooleanMacro(VerboseFlag);
  90
  91     itkSetMacro(LongFlag, bool);
  92     itkGetConstMacro(LongFlag, bool);
  93     itkBooleanMacro(LongFlag);
  94
  95     // I dont want to verify inputs information
  96 #if ITK_VERSION_MAJOR <= 4
  97     virtual void VerifyInputInformation() ITK_OVERRIDE { }
  98 #else
  99     virtual void VerifyInputInformation() const ITK_OVERRIDE { }
 100 #endif
 101
 102    protected:
 103     LabelImageOverlapMeasureFilter();
 104     virtual ~LabelImageOverlapMeasureFilter() {}
 105
 106     PixelType m_BackgroundValue;
 107     PixelType m_Label1;
 108     PixelType m_Label2;
 109     ImagePointer m_Input1;
 110     ImagePointer m_Input2;
 111     bool m_VerboseFlag;
 112     bool m_LongFlag;
 113
 114     virtual void GenerateOutputInformation();
 115     virtual void GenerateInputRequestedRegion();
 116     virtual void GenerateData();
 117
 118   private:
 119     LabelImageOverlapMeasureFilter(const Self&); //purposely not implemented
 120     void operator=(const Self&); //purposely not implemented
 121
 122   }; // end class
 123   //--------------------------------------------------------------------
 124
 125 } // end namespace clitk
 126 //--------------------------------------------------------------------
 127
 128 #include "clitkLabelImageOverlapMeasureFilter.txx"
 129
 130 #endif