tools/CMakeLists.txt

   1 #=========================================================
   2 # Add Libraries used in vv and clitk to avoid recompilation
   3 WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo)
   4 add_library(clitkCropImageLib clitkCropImageGenericFilter.cxx ${clitkCropImage_GGO_C})
   5
   6 WRAP_GGO(clitkImageConvert_GGO_C clitkImageConvert.ggo)
   7 add_library(clitkImageConvertLib clitkImageConvertGenericFilter.cxx ${clitkImageConvert_GGO_C})
   8
   9 WRAP_GGO(clitkBinarizeImage_GGO_C clitkBinarizeImage.ggo)
  10 add_library(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBinarizeImage_GGO_C})
  11
  12 WRAP_GGO(clitkProfileImage_GGO_C clitkProfileImage.ggo)
  13 add_library(clitkProfileImageLib clitkProfileImageGenericFilter.cxx ${clitkProfileImage_GGO_C})
  14
  15 WRAP_GGO(clitkHistogramImage_GGO_C clitkHistogramImage.ggo)
  16 add_library(clitkHistogramImageLib clitkHistogramImageGenericFilter.cxx ${clitkHistogramImage_GGO_C})
  17
  18 WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo)
  19 add_library(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C})
  20
  21 WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo)
  22 add_library(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C})
  23
  24 WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo)
  25 add_library(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
  26
  27 WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
  28 add_library(clitkMedianImageFilterLib clitkMedianImageGenericFilter.cxx ${clitkMedianImageFilter_GGO_C})
  29
  30 #=========================================================
  31 if(CLITK_BUILD_TOOLS)
  32
  33   WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo)
  34   add_executable(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C})
  35   target_link_libraries(clitkDicomInfo clitkCommon)
  36   # set_target_properties(clitkDicomInfo
  37   #   PROPERTIES
  38   #   LINK_INTERFACE_LIBRARIES ""
  39   #   )
  40   set(TOOLS_INSTALL clitkDicomInfo)
  41
  42   WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo)
  43   add_executable(clitkDicom2Image clitkDicom2Image.cxx ${clitkDicom2Image_GGO_C})
  44   target_link_libraries(clitkDicom2Image clitkCommon)
  45   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicom2Image)
  46
  47   WRAP_GGO(clitkDicomWave2Text_GGO_C clitkDicomWave2Text.ggo)
  48   add_executable(clitkDicomWave2Text clitkDicomWave2Text.cxx ${clitkDicomWave2Text_GGO_C})
  49   target_link_libraries(clitkDicomWave2Text clitkCommon)
  50   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomWave2Text)
  51
  52   WRAP_GGO(clitkImageInfo_GGO_C clitkImageInfo.ggo)
  53   add_executable(clitkImageInfo clitkImageInfo.cxx ${clitkImageInfo_GGO_C})
  54   target_link_libraries(clitkImageInfo clitkCommon)
  55   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageInfo)
  56
  57   add_executable(clitkImageConvert clitkImageConvert.cxx)
  58   target_link_libraries(clitkImageConvert clitkImageConvertLib clitkCommon)
  59   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageConvert)
  60
  61   add_executable(clitkBinarizeImage clitkBinarizeImage.cxx)
  62   target_link_libraries(clitkBinarizeImage clitkBinarizeImageLib clitkCommon)
  63   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinarizeImage)
  64
  65   add_executable(clitkProfileImage clitkProfileImage.cxx)
  66   target_link_libraries(clitkProfileImage clitkProfileImageLib clitkCommon)
  67   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkProfileImage)
  68
  69   add_executable(clitkHistogramImage clitkHistogramImage.cxx)
  70   target_link_libraries(clitkHistogramImage clitkHistogramImageLib clitkCommon)
  71   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkHistogramImage)
  72
  73   WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo)
  74   add_executable(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C})
  75   target_link_libraries(clitkVFResample clitkCommon)
  76   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFResample)
  77
  78   WRAP_GGO(clitkVFInterpolate_GGO_C clitkVFInterpolate.ggo)
  79   add_executable(clitkVFInterpolate clitkVFInterpolate.cxx clitkVFInterpolateGenericFilter.cxx ${clitkVFInterpolate_GGO_C})
  80   target_link_libraries(clitkVFInterpolate clitkCommon)
  81   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFInterpolate)
  82
  83   WRAP_GGO(clitkImageCreate_GGO_C clitkImageCreate.ggo)
  84   add_executable(clitkImageCreate clitkImageCreate.cxx ${clitkImageCreate_GGO_C})
  85   target_link_libraries(clitkImageCreate clitkCommon)
  86   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageCreate)
  87
  88   WRAP_GGO(clitkZeroVF_GGO_C clitkZeroVF.ggo)
  89   add_executable(clitkZeroVF clitkZeroVF.cxx ${clitkZeroVF_GGO_C} clitkZeroVFGenericFilter.cxx)
  90   target_link_libraries(clitkZeroVF clitkCommon)
  91   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkZeroVF)
  92
  93   WRAP_GGO(clitkSplitImage_GGO_C clitkSplitImage.ggo)
  94   add_executable(clitkSplitImage clitkSplitImage.cxx clitkSplitImageGenericFilter.cxx ${clitkSplitImage_GGO_C})
  95   target_link_libraries(clitkSplitImage clitkCommon )
  96   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSplitImage)
  97
  98   WRAP_GGO(clitkWriteDicomSeries_GGO_C clitkWriteDicomSeries.ggo)
  99   add_executable(clitkWriteDicomSeries clitkWriteDicomSeries.cxx ${clitkWriteDicomSeries_GGO_C})
 100   target_link_libraries(clitkWriteDicomSeries clitkCommon )
 101   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWriteDicomSeries)
 102
 103   WRAP_GGO(clitkSpect2Dicom_GGO_C clitkSpect2Dicom.ggo)
 104   add_executable(clitkSpect2Dicom clitkSpect2Dicom.cxx ${clitkSpect2Dicom_GGO_C})
 105   target_link_libraries(clitkSpect2Dicom clitkCommon )
 106   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSpect2Dicom)
 107
 108   WRAP_GGO(clitkChangeDicomTag_GGO_C clitkChangeDicomTag.ggo)
 109   add_executable(clitkChangeDicomTag clitkChangeDicomTag.cxx ${clitkChangeDicomTag_GGO_C})
 110   target_link_libraries(clitkChangeDicomTag clitkCommon )
 111   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeDicomTag)
 112
 113   WRAP_GGO(clitkGateSimulation2Dicom_GGO_C clitkGateSimulation2Dicom.ggo)
 114   add_executable(clitkGateSimulation2Dicom clitkGateSimulation2Dicom.cxx ${clitkGateSimulation2Dicom_GGO_C})
 115   target_link_libraries(clitkGateSimulation2Dicom clitkCommon )
 116   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGateSimulation2Dicom)
 117
 118   WRAP_GGO(clitkPartitionEnergyWindowDicom_GGO_C clitkPartitionEnergyWindowDicom.ggo)
 119   add_executable(clitkPartitionEnergyWindowDicom clitkPartitionEnergyWindowDicom.cxx ${clitkPartitionEnergyWindowDicom_GGO_C})
 120   target_link_libraries(clitkPartitionEnergyWindowDicom clitkCommon )
 121   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPartitionEnergyWindowDicom)
 122
 123   WRAP_GGO(clitkUpdateVRTagDicom_GGO_C clitkUpdateVRTagDicom.ggo)
 124   add_executable(clitkUpdateVRTagDicom clitkUpdateVRTagDicom.cxx ${clitkUpdateVRTagDicom_GGO_C})
 125   target_link_libraries(clitkUpdateVRTagDicom clitkCommon )
 126   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUpdateVRTagDicom)
 127
 128   WRAP_GGO(clitkImage2DicomDose_GGO_C clitkImage2DicomDose.ggo)
 129   add_executable(clitkImage2DicomDose clitkImage2DicomDose.cxx ${clitkImage2DicomDose_GGO_C})
 130   target_link_libraries(clitkImage2DicomDose clitkCommon)
 131   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomDose)
 132
 133   WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo)
 134   add_executable(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx
 135     ${clitkMedianTemporalDimension_GGO_C})
 136   target_link_libraries(clitkMedianTemporalDimension clitkCommon )
 137   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianTemporalDimension)
 138
 139   WRAP_GGO(clitkWarpImage_GGO_C clitkWarpImage.ggo)
 140   add_executable(clitkWarpImage clitkWarpImage.cxx ${clitkWarpImage_GGO_C} clitkWarpImageGenericFilter.cxx)
 141   target_link_libraries(clitkWarpImage clitkCommon)
 142   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWarpImage)
 143
 144   WRAP_GGO(clitkInvertVF_GGO_C clitkInvertVF.ggo)
 145   add_executable(clitkInvertVF clitkInvertVF.cxx ${clitkInvertVF_GGO_C})
 146   target_link_libraries(clitkInvertVF clitkCommon)
 147   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF)
 148
 149   WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo)
 150   add_library(clitkAffineTransformLib clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
 151   add_executable(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
 152   target_link_libraries(clitkAffineTransform clitkCommon )
 153   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform)
 154
 155   WRAP_GGO(clitkElastixTransformToMatrix_GGO_C clitkElastixTransformToMatrix.ggo)
 156   add_executable(clitkElastixTransformToMatrix clitkElastixTransformToMatrix.cxx ${clitkElastixTransformToMatrix_GGO_C})
 157   target_link_libraries(clitkElastixTransformToMatrix clitkAffineTransformLib clitkCommon )
 158   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkElastixTransformToMatrix)
 159
 160   WRAP_GGO(clitkMatrixToElastixTransform_GGO_C clitkMatrixToElastixTransform.ggo)
 161   add_executable(clitkMatrixToElastixTransform clitkMatrixToElastixTransform.cxx ${clitkMatrixToElastixTransform_GGO_C})
 162   target_link_libraries(clitkMatrixToElastixTransform clitkCommon )
 163   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixToElastixTransform)
 164
 165   WRAP_GGO(clitkMatrixMultiply_GGO_C clitkMatrixMultiply.ggo)
 166   add_executable(clitkMatrixMultiply clitkMatrixMultiply.cxx ${clitkMatrixMultiply_GGO_C})
 167   target_link_libraries(clitkMatrixMultiply clitkCommon )
 168   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixMultiply)
 169
 170   WRAP_GGO(clitkMatrixInverse_GGO_C clitkMatrixInverse.ggo)
 171   add_executable(clitkMatrixInverse clitkMatrixInverse.cxx ${clitkMatrixInverse_GGO_C})
 172   target_link_libraries(clitkMatrixInverse clitkCommon )
 173   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixInverse)
 174
 175   WRAP_GGO(clitkSetBackground_GGO_C clitkSetBackground.ggo)
 176   add_executable(clitkSetBackground clitkSetBackground.cxx clitkSetBackgroundGenericFilter.cxx ${clitkSetBackground_GGO_C})
 177   target_link_libraries(clitkSetBackground clitkCommon)
 178   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSetBackground)
 179
 180   WRAP_GGO(clitkGammaIndex_GGO_C clitkGammaIndex.ggo)
 181   add_executable(clitkGammaIndex clitkGammaIndex.cxx ${clitkGammaIndex_GGO_C})
 182   target_link_libraries(clitkGammaIndex clitkCommon)
 183   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGammaIndex)
 184
 185   add_executable(clitkImageArithm clitkImageArithm.cxx)
 186   target_link_libraries(clitkImageArithm clitkImageArithmImageLib clitkCommon )
 187   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageArithm)
 188
 189   add_executable(clitkVectorArithm clitkVectorArithm.cxx)
 190   target_link_libraries(clitkVectorArithm clitkVectorArithmLib clitkCommon )
 191   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorArithm)
 192
 193   WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo)
 194   add_executable(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C})
 195   target_link_libraries(clitkUnsharpMask clitkCommon )
 196   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUnsharpMask)
 197
 198   WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
 199   add_executable(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C})
 200   target_link_libraries(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon)
 201   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter)
 202
 203   WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo)
 204   add_executable(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C})
 205   target_link_libraries(clitkMinMaxMask clitkCommon  )
 206   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMinMaxMask)
 207
 208   WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo)
 209   add_executable(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C})
 210   target_link_libraries(clitkAutoCrop clitkCommon )
 211   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAutoCrop)
 212
 213   WRAP_GGO(clitkDicomRTStruct2Image_GGO_C clitkDicomRTStruct2Image.ggo)
 214   add_executable(clitkDicomRTStruct2Image clitkDicomRTStruct2Image.cxx ${clitkDicomRTStruct2Image_GGO_C})
 215   target_link_libraries(clitkDicomRTStruct2Image clitkDicomRTStruct)
 216   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image)
 217
 218   if(CLITK_USE_SYSTEM_GDCM)
 219     WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
 220     add_executable(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
 221     target_link_libraries(clitkImage2DicomRTStruct clitkDicomRTStruct)
 222
 223     #include pugiXML to parse XML
 224     WRAP_GGO(clitkXml2DicomRTStruct_GGO_C clitkXml2DicomRTStruct.ggo)
 225     add_executable(clitkXml2DicomRTStruct ../utilities/pugixml/pugixml.cpp clitkXml2DicomRTStruct.cxx ${clitkXml2DicomRTStruct_GGO_C})
 226     target_link_libraries(clitkXml2DicomRTStruct clitkDicomRTStruct)
 227   endif()
 228
 229   WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
 230   add_executable(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C})
 231   target_link_libraries(clitkComposeVF clitkCommon  )
 232   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkComposeVF)
 233
 234   WRAP_GGO(clitkMergeSequence_GGO_C clitkMergeSequence.ggo)
 235   add_executable(clitkMergeSequence clitkMergeSequence.cxx clitkMergeSequenceGenericFilter.cxx ${clitkMergeSequence_GGO_C})
 236   target_link_libraries(clitkMergeSequence clitkCommon)
 237   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeSequence)
 238
 239   WRAP_GGO(clitkBackProjectImage_GGO_C clitkBackProjectImage.ggo)
 240   add_executable(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C})
 241   target_link_libraries(clitkBackProjectImage clitkCommon)
 242   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBackProjectImage)
 243
 244   add_executable(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C})
 245   target_link_libraries(clitkCropImage clitkCropImageLib clitkCommon)
 246   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCropImage)
 247
 248   # WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo)
 249   # add_executable(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C})
 250   # target_link_libraries(clitkExtractSlice clitkCommon)
 251   #set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtractSlice)
 252
 253   WRAP_GGO(clitkFlipImage_GGO_C clitkFlipImage.ggo)
 254   add_executable(clitkFlipImage clitkFlipImage.cxx clitkFlipImageGenericFilter.cxx ${clitkFlipImage_GGO_C})
 255   target_link_libraries(clitkFlipImage clitkCommon)
 256   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFlipImage)
 257
 258   WRAP_GGO(clitkMirrorPadImage_GGO_C clitkMirrorPadImage.ggo)
 259   add_executable(clitkMirrorPadImage clitkMirrorPadImage.cxx clitkMirrorPadImageGenericFilter.cxx ${clitkMirrorPadImage_GGO_C})
 260   target_link_libraries(clitkMirrorPadImage clitkCommon)
 261   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMirrorPadImage)
 262
 263   WRAP_GGO(clitkImageMoment_GGO_C clitkImageMoment.ggo)
 264   add_executable(clitkImageMoment clitkImageMoment.cxx clitkImageMomentGenericFilter.cxx ${clitkImageMoment_GGO_C})
 265   target_link_libraries(clitkImageMoment clitkCommon)
 266   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageMoment)
 267
 268   WRAP_GGO(clitkImageStatistics_GGO_C clitkImageStatistics.ggo)
 269   add_executable(clitkImageStatistics clitkImageStatistics.cxx clitkImageStatisticsGenericFilter.cxx ${clitkImageStatistics_GGO_C})
 270   target_link_libraries(clitkImageStatistics clitkCommon)
 271   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageStatistics)
 272
 273   WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo)
 274   add_executable(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C})
 275   target_link_libraries(clitkVFConvert clitkCommon )
 276   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFConvert)
 277
 278   WRAP_GGO(clitkImageToVectorImage_GGO_C clitkImageToVectorImage.ggo)
 279   add_executable(clitkImageToVectorImage  clitkImageToVectorImage.cxx clitkImageToVectorImageGenericFilter.cxx ${clitkImageToVectorImage_GGO_C})
 280   target_link_libraries(clitkImageToVectorImage  clitkCommon)
 281   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageToVectorImage)
 282
 283   WRAP_GGO(clitkVectorImageToImage_GGO_C clitkVectorImageToImage.ggo)
 284   add_executable(clitkVectorImageToImage  clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C})
 285   target_link_libraries(clitkVectorImageToImage  clitkCommon)
 286   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorImageToImage)
 287
 288   WRAP_GGO(clitkNVectorImageTo4DImage_GGO_C clitkNVectorImageTo4DImage.ggo)
 289   add_executable(clitkNVectorImageTo4DImage  clitkNVectorImageTo4DImage.cxx clitkNVectorImageTo4DImageGenericFilter.cxx ${clitkNVectorImageTo4DImage_GGO_C})
 290   target_link_libraries(clitkNVectorImageTo4DImage  clitkCommon)
 291   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNVectorImageTo4DImage)
 292
 293   WRAP_GGO(clitk4DImageToNVectorImage_GGO_C clitk4DImageToNVectorImage.ggo)
 294   add_executable(clitk4DImageToNVectorImage  clitk4DImageToNVectorImage.cxx clitk4DImageToNVectorImageGenericFilter.cxx ${clitk4DImageToNVectorImage_GGO_C})
 295   target_link_libraries(clitk4DImageToNVectorImage  clitkCommon)
 296   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitk4DImageToNVectorImage)
 297
 298   add_executable(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx)
 299   target_link_libraries(clitkMIP clitkMIPLib clitkCommon)
 300   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMIP)
 301
 302   WRAP_GGO(clitkSum_GGO_C clitkSum.ggo)
 303   add_executable(clitkSum clitkSum.cxx ${clitkSum_GGO_C})
 304   target_link_libraries(clitkSum clitkCommon)
 305   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSum)
 306
 307   WRAP_GGO(clitkExtrude_GGO_C clitkExtrude.ggo)
 308   add_executable(clitkExtrude clitkExtrude.cxx ${clitkExtrude_GGO_C})
 309   target_link_libraries(clitkExtrude clitkCommon)
 310   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtrude)
 311
 312   WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
 313   add_executable(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
 314   target_link_libraries(clitkTransformLandmarks clitkCommon)
 315   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks)
 316
 317   WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo)
 318   add_executable(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C})
 319   target_link_libraries(clitkMaskLandmarks clitkCommon)
 320   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskLandmarks)
 321
 322   WRAP_GGO(clitkJacobianImage_GGO_C clitkJacobianImage.ggo)
 323   add_executable(clitkJacobianImage clitkJacobianImage.cxx clitkJacobianImageGenericFilter.cxx ${clitkJacobianImage_GGO_C})
 324   target_link_libraries(clitkJacobianImage clitkCommon)
 325   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkJacobianImage)
 326
 327   WRAP_GGO(clitkPadImage_GGO_C clitkPadImage.ggo)
 328   add_executable(clitkPadImage clitkPadImage.cxx clitkPadImageGenericFilter.cxx ${clitkPadImage_GGO_C})
 329   target_link_libraries(clitkPadImage clitkCommon)
 330   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPadImage)
 331
 332   WRAP_GGO(clitkCatImage_GGO_C clitkCatImage.ggo)
 333   add_executable(clitkCatImage clitkCatImage.cxx ${clitkCatImage_GGO_C})
 334   target_link_libraries(clitkCatImage clitkCommon)
 335   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCatImage)
 336
 337   WRAP_GGO(clitkAnisotropicDiffusion_GGO_C clitkAnisotropicDiffusion.ggo)
 338   add_executable(clitkAnisotropicDiffusion clitkAnisotropicDiffusion.cxx
 339     clitkAnisotropicDiffusionGenericFilter.cxx
 340     ${clitkAnisotropicDiffusion_GGO_C})
 341   target_link_libraries(clitkAnisotropicDiffusion clitkCommon)
 342   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAnisotropicDiffusion)
 343
 344   WRAP_GGO(clitkChangeImageInfo_GGO_C clitkChangeImageInfo.ggo)
 345   add_executable(clitkChangeImageInfo clitkChangeImageInfo.cxx
 346     clitkChangeImageInfoGenericFilter.cxx
 347     ${clitkChangeImageInfo_GGO_C})
 348   target_link_libraries(clitkChangeImageInfo clitkCommon)
 349   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeImageInfo)
 350
 351   WRAP_GGO(clitkMergeAsciiDoseActor_GGO_C clitkMergeAsciiDoseActor.ggo)
 352   add_executable(clitkMergeAsciiDoseActor clitkMergeAsciiDoseActor.cxx ${clitkMergeAsciiDoseActor_GGO_C})
 353   target_link_libraries(clitkMergeAsciiDoseActor ITKCommon clitkCommon)
 354   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeAsciiDoseActor)
 355
 356   WRAP_GGO(clitkImageUncertainty_GGO_C clitkImageUncertainty.ggo)
 357   add_executable(clitkImageUncertainty clitkImageUncertainty.cxx clitkImageUncertainty_ggo.c)
 358   target_link_libraries(clitkImageUncertainty clitkCommon ${ITK_LIBRARIES})
 359   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageUncertainty)
 360
 361   WRAP_GGO(clitkNormalizeImageFilter_GGO_C clitkNormalizeImageFilter.ggo)
 362   add_executable(clitkNormalizeImageFilter clitkNormalizeImageFilter.cxx ${clitkNormalizeImageFilter_GGO_C})
 363   target_link_libraries(clitkNormalizeImageFilter clitkCommon )
 364   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNormalizeImageFilter)
 365
 366   WRAP_GGO(clitkImageGradientMagnitude_GGO_C clitkImageGradientMagnitude.ggo)
 367   add_executable(clitkImageGradientMagnitude clitkImageGradientMagnitude.cxx ${clitkImageGradientMagnitude_GGO_C})
 368   target_link_libraries(clitkImageGradientMagnitude clitkCommon )
 369   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageGradientMagnitude)
 370
 371   WRAP_GGO(clitkImageLaplacian_GGO_C clitkImageLaplacian.ggo)
 372   add_executable(clitkImageLaplacian clitkImageLaplacian.cxx ${clitkImageLaplacian_GGO_C})
 373   target_link_libraries(clitkImageLaplacian clitkCommon )
 374   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageLaplacian)
 375
 376   WRAP_GGO(clitkImageIntensityWindowing_GGO_C clitkImageIntensityWindowing.ggo)
 377   add_executable(clitkImageIntensityWindowing clitkImageIntensityWindowing.cxx ${clitkImageIntensityWindowing_GGO_C})
 378   target_link_libraries(clitkImageIntensityWindowing clitkCommon )
 379   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageIntensityWindowing)
 380
 381   WRAP_GGO(clitkMaskOfIntegratedIntensity_GGO_C clitkMaskOfIntegratedIntensity.ggo)
 382   add_executable(clitkMaskOfIntegratedIntensity clitkMaskOfIntegratedIntensity.cxx ${clitkMaskOfIntegratedIntensity_GGO_C})
 383   target_link_libraries(clitkMaskOfIntegratedIntensity clitkCommon )
 384   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskOfIntegratedIntensity)
 385
 386
 387   WRAP_GGO(clitkBlurImage_GGO_C clitkBlurImage.ggo)
 388   add_executable(clitkBlurImage clitkBlurImage.cxx ${clitkBlurImage_GGO_C})
 389   target_link_libraries(clitkBlurImage clitkCommon )
 390   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBlurImage)
 391
 392   #=========================================================
 393   option(CLITK_USE_ROOT "Build experimental tools using root" OFF)
 394   if (CLITK_USE_ROOT)
 395     find_package(ROOT REQUIRED)
 396     if(ROOT_FOUND)
 397       message(STATUS "ROOT found : ${ROOT_LIBRARY_DIR} ${ROOT_INCLUDE_DIR} ${ROOT_LIBRARIES}")
 398     else(ROOT_FOUND)
 399       message(FATAL_ERROR
 400         "Cannot build without ROOT.  Please set ROOTSYS environement variable.")
 401     endif(ROOT_FOUND)
 402     include_directories(${ROOT_INCLUDE_DIR})
 403     link_directories(${ROOT_LIBRARY_DIR})
 404     WRAP_GGO(clitkMergeRootFiles_GGO_C clitkMergeRootFiles.ggo)
 405     add_executable(clitkMergeRootFiles clitkMergeRootFiles.cxx GateMergeManager.cc ${clitkMergeRootFiles_GGO_C})
 406     target_link_libraries(clitkMergeRootFiles ${ROOT_LIBRARIES})
 407     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeRootFiles)
 408   endif()
 409   #=========================================================
 410
 411
 412   #=========================================================
 413   if(CLITK_EXPERIMENTAL)
 414     WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo)
 415     add_executable(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C})
 416     target_link_libraries(clitkBinaryImageToMesh clitkCommon)
 417     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinaryImageToMesh)
 418
 419     WRAP_GGO(clitkMeshToBinaryImage_GGO_C clitkMeshToBinaryImage.ggo)
 420     add_executable(clitkMeshToBinaryImage clitkMeshToBinaryImage.cxx ${clitkMeshToBinaryImage_GGO_C})
 421     target_link_libraries(clitkMeshToBinaryImage clitkCommon)
 422     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshToBinaryImage)
 423
 424     WRAP_GGO(clitkMeshViewer_GGO_C clitkMeshViewer.ggo)
 425     add_executable(clitkMeshViewer clitkMeshViewer.cxx ${clitkMeshViewer_GGO_C})
 426     target_link_libraries(clitkMeshViewer clitkCommon)
 427     set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer)
 428   endif(CLITK_EXPERIMENTAL)
 429   #=========================================================
 430
 431
 432   #=========================================================
 433   WRAP_GGO(clitkDice_GGO_C clitkDice.ggo)
 434   add_executable(clitkDice clitkDice.cxx ${clitkDice_GGO_C})
 435   target_link_libraries(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
 436   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice)
 437
 438   WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo)
 439   add_executable(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c)
 440   target_link_libraries(clitkDicomRTPlan2Gate clitkCommon)
 441   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
 442   #=========================================================
 443
 444
 445   install(TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
 446
 447 endif(CLITK_BUILD_TOOLS)