Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk

diff --combined tools/CMakeLists.txt
index 7b40d020b5c3b73e00649d788700ab831f7a96a4,4259e19439bc678a3e577ac95e1b46f1bb8f455f..ca366afe6e655443f92532ffead28003bf1eff5f
--- 1/tools/CMakeLists.txt
--- 2/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@@ -99,6 -99,16 +99,16 @@@ if(CLITK_BUILD_TOOLS
    add_executable(clitkWriteDicomSeries clitkWriteDicomSeries.cxx ${clitkWriteDicomSeries_GGO_C})
    target_link_libraries(clitkWriteDicomSeries clitkCommon )
    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWriteDicomSeries)
+   
+   WRAP_GGO(clitkSpect2Dicom_GGO_C clitkSpect2Dicom.ggo)
+   add_executable(clitkSpect2Dicom clitkSpect2Dicom.cxx ${clitkSpect2Dicom_GGO_C})
+   target_link_libraries(clitkSpect2Dicom clitkCommon )
+   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSpect2Dicom)
+ 
+   WRAP_GGO(clitkChangeDicomTag_GGO_C clitkChangeDicomTag.ggo)
+   add_executable(clitkChangeDicomTag clitkChangeDicomTag.cxx ${clitkChangeDicomTag_GGO_C})
+   target_link_libraries(clitkChangeDicomTag clitkCommon )
+   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeDicomTag)
  
    WRAP_GGO(clitkGateSimulation2Dicom_GGO_C clitkGateSimulation2Dicom.ggo)
    add_executable(clitkGateSimulation2Dicom clitkGateSimulation2Dicom.cxx ${clitkGateSimulation2Dicom_GGO_C})
@@@ -137,13 -147,14 +147,14 @@@
    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF)
  
    WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo)
+   add_library(clitkAffineTransformLib clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
    add_executable(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
    target_link_libraries(clitkAffineTransform clitkCommon )
    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform)
  
    WRAP_GGO(clitkElastixTransformToMatrix_GGO_C clitkElastixTransformToMatrix.ggo)
    add_executable(clitkElastixTransformToMatrix clitkElastixTransformToMatrix.cxx ${clitkElastixTransformToMatrix_GGO_C})
-   target_link_libraries(clitkElastixTransformToMatrix clitkCommon )
+   target_link_libraries(clitkElastixTransformToMatrix clitkAffineTransformLib clitkCommon )
    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkElastixTransformToMatrix)
  
    WRAP_GGO(clitkMatrixToElastixTransform_GGO_C clitkMatrixToElastixTransform.ggo)
@@@ -208,6 -219,11 +219,11 @@@
      WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
      add_executable(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
      target_link_libraries(clitkImage2DicomRTStruct clitkDicomRTStruct)
+ 
+     #include pugiXML to parse XML
+     WRAP_GGO(clitkXml2DicomRTStruct_GGO_C clitkXml2DicomRTStruct.ggo)
+     add_executable(clitkXml2DicomRTStruct ../utilities/pugixml/pugixml.cpp clitkXml2DicomRTStruct.cxx ${clitkXml2DicomRTStruct_GGO_C})
+     target_link_libraries(clitkXml2DicomRTStruct clitkDicomRTStruct)
    endif()
  
    WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
@@@ -254,16 -270,6 +270,16 @@@
    target_link_libraries(clitkImageStatistics clitkCommon)
    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageStatistics)
  
 +  WRAP_GGO(clitkSUVPeak_GGO_C clitkSUVPeak.ggo)
 +  add_executable(clitkSUVPeak clitkSUVPeak.cxx clitkSUVPeakGenericFilter.cxx ${clitkSUVPeak_GGO_C})
 +  target_link_libraries(clitkSUVPeak clitkCommon)
 +  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSUVPeak)
 +
 +  WRAP_GGO(clitkRTStructStatistics_GGO_C clitkRTStructStatistics.ggo)
 +  add_executable(clitkRTStructStatistics clitkRTStructStatistics.cxx clitkRTStructStatisticsGenericFilter.cxx ${clitkRTStructStatistics_GGO_C})
 +  target_link_libraries(clitkRTStructStatistics clitkCommon)
 +  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkRTStructStatistics)
 +
    WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo)
    add_executable(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C})
    target_link_libraries(clitkVFConvert clitkCommon )
@@@ -298,6 -304,11 +314,11 @@@
    target_link_libraries(clitkSum clitkCommon)
    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSum)
  
+   WRAP_GGO(clitkExtrude_GGO_C clitkExtrude.ggo)
+   add_executable(clitkExtrude clitkExtrude.cxx ${clitkExtrude_GGO_C})
+   target_link_libraries(clitkExtrude clitkCommon)
+   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtrude)
+ 
    WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
    add_executable(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
    target_link_libraries(clitkTransformLandmarks clitkCommon)