lib/src1/bruker2dicom.h

   1 #ifndef BRUKER2DICOM_H
   2 #define BRUKER2DICOM_H
   3
   4
   5 #include "gdcmFile.h"
   6 #include "gdcmFileHelper.h"
   7 #include "gdcmCommon.h"
   8 #include "gdcmDebug.h"
   9 #include "gdcmUtil.h"
  10 #include "gdcmDirList.h"
  11
  12 #include "gdcmArgMgr.h"
  13 #include "brukerSystem.h"
  14 #include "brukerdataset.h"
  15 #include "brukerkspaceobject.h"
  16 #include "brukerimage.h"
  17
  18 #include <iostream>
  19 #include <sstream>
  20
  21
  22
  23 class creaBruker_EXPORT Bruker2Dicom {
  24
  25 public:
  26  /*! \brief Constructor
  27 */
  28   Bruker2Dicom () /* : verbose(0), mhd(0), dicom(0), day(O)*/ {};
  29 /*! \brief Destructor
  30 */
  31   ~Bruker2Dicom (){};
  32
  33   void SetInputDirectory (const std::string &i) { InputDirName   = i;}
  34   void SetOutputDirectory(const std::string &o) { OutputDirName  = o;}
  35   void SetConvertModeToDicom()                  { dicom = 1; mhd = 0;}
  36   void SetConvertModeToMhd()                    { dicom = 0; mhd = 1;}
  37   bool Execute();
  38
  39   /*
  40   // For debugging pupose only.
  41   //Don't need accessors : Attributes are 'public'
  42
  43   void SetVerbose(int v) { verbose = v;}
  44   void SetMhd(int m)     { mhd = m;    }
  45   void SetDicom(int d)   { dicom = d;  }
  46   */
  47
  48 private :
  49
  50 void MakeDicomImage(unsigned char *tabPixels,
  51               int X,
  52               int Y,
  53               int nbFrames,
  54               int pixelSize,
  55               double spacingX, double spacingY, double sliceDistance,
  56               std::string dcmImageName,
  57               const std::string &patientName,
  58               const char *day,
  59               std::string &studyUID,
  60               std::string &serieUID,
  61               std::string &studyDescr,
  62               std::string &serieDescr,
  63               std::string &strStudyTimeDate,
  64               int imgNum,
  65               GDCM_NAME_SPACE::ImageContentType contentType
  66       );
  67
  68 std::vector<BrukerImage> CreateImageSet ( );
  69
  70 void getImhDataType(BrukerFieldData &bDPT,
  71                     std::string &mhdDataPixelType,
  72                     int &pixelSize);
  73
  74 void cleanString(std::string &s);
  75
  76 bool CreateDirectory(std::string &dirNameout);
  77
  78 int CheckUserDirectory(std::string &userDirName);
  79 void DealWithMultiStudyDirectory(GDCM_NAME_SPACE::DirListType &fileNames);
  80 void DealWithSingleStudyDirectory(GDCM_NAME_SPACE::DirListType &fileNames);
  81 void DealWithNiveau1(std::string &level1Directory, std::string &currentOutputDirName);
  82 void DealWithNiveau2(std::string &level2Directory, std::string &currentOutputDirName);
  83 void DealWithNiveau3(std::string &level3Directory, std::string &currentOutputDirName);
  84
  85 void dealWithCarto(GDCM_NAME_SPACE::DirListType &fileNames, int NX, int NY, int nbSlices,
  86                    double fovX, double fovY, double sliceDistance,
  87                    char *copyFile, std::string &currentOutputDirName,
  88                    char *outputMhdFileName, char *output2dseqCartoName);
  89
  90 public:
  91
  92 // these ones are for debugging only
  93 // don't bbfy the accessors.
  94
  95    int verbose;
  96    const char *day;
  97
  98 private :
  99    std::string InputDirName;
 100    std::string OutputDirName;
 101
 102    bool subjectFound;
 103    bool acqpFound;
 104
 105    std::string subject_entry;
 106    std::string subject_position;
 107    std::string subject_date;
 108    std::string subject_study_name;
 109
 110    int mhd;
 111    int dicom;
 112
 113    int nbSlices;
 114    BrukerDataSet br_subject;
 115    BrukerDataSet br_acqp;
 116    BrukerDataSet br_method;
 117    BrukerDataSet br_d3proc;
 118    BrukerDataSet br_isa;
 119    BrukerDataSet br_reco;
 120
 121    std::vector<BrukerImage> imageSet;
 122
 123 // For DICOM images.
 124
 125    std::string strStudyUID;
 126    std::string strSerieUID;
 127    std::string strStudyDescr;
 128    std::string strSerieDescr;
 129    std::string strStudyTimeDate;
 130    std::string strPatientName;
 131    std::string subject_name; // cleaned strPatientName
 132
 133    int serieNumber;
 134    int instanceNumber;
 135 };
 136
 137 #endif