lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 //----------------------------------------------------------------------------------------------------------------
   2 // Class definition include
   3 //----------------------------------------------------------------------------------------------------------------
   4 #include "wxContourMainFrame.h"
   5
   6
   7
   8 //----------------------------------------------------------------------------------------------------------------
   9 // Includes
  10 //----------------------------------------------------------------------------------------------------------------
  11
  12
  13 #include "NameWrapper.h"
  14 #include "wx/artprov.h"
  15 #include "ConceptDataWrap.h"
  16 #include <creaWx.h>
  17
  18 #include <string>
  19 using namespace std;
  20
  21 //----------------------------------------------------------------------------------------------------------------
  22 // Class implementation
  23 //----------------------------------------------------------------------------------------------------------------
  24 /** @file wxContourMainFrame.cxx */
  25
  26         //------------------------------------------------------------------------------------------------------------
  27         // Constructors & Destructors
  28         //------------------------------------------------------------------------------------------------------------
  29
  30 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
  31 char wxContourMainFrame::COPY = 'C';
  32
  33         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  34                 //: wxPanel(parent, id, title, pos, size, style)
  35                 //: wxWindow(parent, id, pos, size, style)
  36                 : wxPanel(parent, id, pos, size, style)
  37         {
  38                 m_mgr.SetManagedWindow(this);
  39                 _contourGroup                           = 1;
  40                 _creatingContoursActive         = false;
  41                 _theViewPanel                           = NULL;
  42 //              _modelManager                           = NULL;
  43                 _instantPanel                           = NULL;
  44 //              _buttonsBar                                     = NULL;
  45 //              _gridPanel                                      = NULL;
  46 //              _drawToolsPanel                         = NULL;
  47 //              _operationsToolsPanel           = NULL;
  48                 //_autoFormsPanel                               = NULL;
  49 //              _standardToolsPanel                     = NULL;
  50 //              _editionToolsPanel                      = NULL;
  51 //              _listViewPanel                          = NULL;
  52 //              _sceneManager                           = NULL;
  53                 //_actualInstant                                = NULL;
  54                 _numberOfVariablesStatistics = 6+1;
  55
  56                 _refLineControl                         = NULL;
  57                 _refLineModel                           = NULL;
  58                 _refLineView                            = NULL;
  59 //              _actorPresent                           = false;
  60
  61                 // set up default notebook style
  62 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  63 //              m_notebook_theme = 0;
  64                 //wxContour_ActionCommandsID a;
  65
  66                 _contourextractdata                     = NULL;
  67                 _viewMaskImage                          = NULL;
  68                 _viewMaskImagePanel                     = NULL;
  69                 _viewThresholdImage                     = NULL;
  70                 _viewThresholdImagePanel        = NULL;
  71                 _viewColorLayerImage            = NULL;
  72                 _viewColorLayerImagePanel       = NULL;
  73         }
  74
  75         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
  76                 : wxPanel(parent, id, pos, size, style)
  77         {
  78                 m_mgr.SetManagedWindow(this);
  79                 _contourGroup                           = 1;
  80                 _creatingContoursActive         = false;
  81                 _theViewPanel                           = NULL;
  82
  83                 _instantPanel                           = NULL;
  84                 _refLineControl                         = NULL;
  85                 _refLineModel                           = NULL;
  86                 _refLineView                            = NULL;
  87 //              _actorPresent                           = false;
  88                 _viewMaskImage                          = NULL;
  89                 _viewMaskImagePanel                     = NULL;
  90                 _viewThresholdImage                     = NULL;
  91                 _viewThresholdImagePanel        = NULL;
  92                 _viewColorLayerImage            = NULL;
  93                 _viewColorLayerImagePanel       = NULL;
  94
  95                 // set up default notebook style
  96                 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  97                 m_notebook_theme = 0;
  98                 //wxContour_ActionCommandsID a;
  99                 _numberOfVariablesStatistics = 7;
 100
 101                 _datadir = datadir;
 102
 103
 104                 inredo = 0;
 105                 inundo = 0;
 106
 107                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
 108                 _performingOperation = new PerformingOperation();
 109
 110                 if(images.size() > 0)
 111                 {
 112                         this->setVectImages(images);
 113                 }
 114
 115                 _contourextractdata                     = NULL;
 116 }
 117
 118 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 119 {
 120
 121         _images = imgs;
 122
 123         #if defined(__GNUC__)
 124                 std::string str_home(getenv("HOME"));
 125         #elif defined(_WIN32)
 126                         std::string str_home(getenv("USERPROFILE"));
 127         #endif
 128                 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 129
 130         std::vector<std::string> conceptNameVect;
 131         std::vector<int> conceptSizeVect;
 132
 133         notebook = this->createNotebook();
 134
 135
 136         kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 137
 138
 139         _instantPanel                           = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 140         _theViewPanel                           = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 141
 142 //-------------------------------------------------------------
 143         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 144         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 145
 146
 147         double val = _theViewPanel->getCurrentDeep();
 148         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 149         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 150         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 151         //*******************changeInstant();
 152         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 153
 154         this->configurePanels( );
 155
 156 }
 157
 158
 159         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
 160         {
 161                 if(instance == NULL){
 162                         instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 163                 }
 164                 return instance;
 165         }
 166
 167         std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
 168         {
 169                 return kernelManager->getVectImages();
 170         }
 171
 172         wxContourMainFrame* wxContourMainFrame :: getInstance()
 173         {
 174                 return instance;
 175         }
 176
 177         void wxContourMainFrame :: resetInstance()
 178         {
 179                 instance->Destroy();
 180         }
 181
 182         wxContourMainFrame :: ~wxContourMainFrame()
 183         {
 184                 delete _contourextractdata;
 185                 deleteAllContours();
 186                 _pannew->Close();
 187                 interfMainPanel::resetInstance();
 188                 delete kernelManager;
 189                 instance = NULL;
 190                 //_pannew->Destroy();
 191                 //delete _pannew;
 192
 193                 m_mgr.UnInit();
 194                 //delete m_mgr;
 195
 196                 //El problema al cerrar la aplicacion puede estar asociado
 197                 //a que  wxAUINotebook esta en la aplicacion
 198                 //principal (wxContourGUIExample)tambien
 199                 //EED????               delete _theViewPanel;
 200                 //EED????               delete _instantPanel;
 201                 //EED????               delete _buttonsBar;
 202                 //EED????               delete _actualInstant;
 203                 //EED????               delete _sceneManager;
 204         }
 205
 206
 207         //------------------------------------------------------------------------------------------------------------
 208         // Creational and initialization methods using WxAui
 209         //------------------------------------------------------------------------------------------------------------
 210         //
 211         wxAuiNotebook * wxContourMainFrame :: createNotebook()
 212         {
 213                 wxSize client_size = GetClientSize();
 214                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 215                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 216                 return noteBook;
 217         }
 218
 219
 220         //------------------------------------------------------------------------------------------------------------
 221         // Creational and initialization methods
 222         //------------------------------------------------------------------------------------------------------------
 223         bool wxContourMainFrame :: configurePanels( )
 224         {
 225                 bool configured = _theViewPanel!=NULL;
 226
 227                 configured &= _theViewPanel!=NULL;
 228                 if( _theViewPanel!=NULL )
 229                 {
 230                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 231                         m_mgr.Update();
 232                 }
 233
 234
 235                 if( configured )
 236                 {
 237                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 238                         m_mgr.Update();
 239                 }
 240
 241                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 242                 m_mgr.Update();
 243
 244                 SetMinSize(wxSize(300,300));
 245                 m_mgr.Update();
 246                 return configured;
 247         }
 248
 249
 250         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 251                 {
 252                 bool configured = panel!=NULL;
 253                 configured &= panel!=NULL;
 254
 255                 if( configured )
 256                 {
 257                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 258                         m_mgr.Update();
 259                 }
 260                 return configured;
 261         }
 262
 263         //------------------------------------------------------------------------------------------------------------
 264         //  Attributes getters and setters
 265         //------------------------------------------------------------------------------------------------------------
 266
 267
 268
 269         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 270         {
 271                 _instantPanel = theInstantChooserPanel;
 272         }
 273
 274 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 275 //      {
 276 //              _buttonsBar = theButtonsBar;
 277 //      }
 278
 279 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 280 //      {
 281 //              _gridPanel = theGridPanel;
 282 //      }
 283
 284 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 285 //      {
 286 //              _drawToolsPanel = theDrawToolsPanel;
 287 //      }
 288
 289 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 290 //      {
 291 //              _operationsToolsPanel = theOperationsToolsPanel;
 292 //      }
 293
 294 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 295 //      {
 296 //              _autoFormsPanel = theAutoFormsPanel;
 297 //      }
 298
 299 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 300 //      {
 301 //              _standardToolsPanel= theStandardToolsPanel;
 302 //      }
 303
 304 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 305 //      {
 306 //              _editionToolsPanel =  theEditionToolsPanel;
 307 //      }
 308
 309 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 310 //      {
 311 //              _listViewPanel = theListViewPanel;
 312 //      }
 313
 314
 315
 316 void wxContourMainFrame::onCreateContourSpline( ){
 317
 318         //JCP 20-10-08 Undo redo implementation
 319         saveState();
 320         //JCP 20-10-08 Undo redo implementation
 321         createContour( 1 );
 322
 323 }
 324 void wxContourMainFrame::onCreateContourRectangle( ){
 325     //JCP 20-10-08 Undo redo implementation
 326         saveState();
 327         //JCP 20-10-08 Undo redo implementation
 328         createContour( 2 );
 329 }
 330 void wxContourMainFrame::onCreateContourCircle( ){
 331     //JCP 20-10-08 Undo redo implementation
 332         saveState();
 333         //JCP 20-10-08 Undo redo implementation
 334         createContour( 3 );
 335 }
 336
 337 void wxContourMainFrame::onCreateContourLine( ){
 338     //JCP 20-10-08 Undo redo implementation
 339         saveState();
 340         //JCP 20-10-08 Undo redo implementation
 341         createContour( 6 );
 342 }
 343
 344 // RaC 09-09 --------------------------------------
 345 void wxContourMainFrame::onCreateContourPoints( ){
 346     //JCP 20-10-08 Undo redo implementation
 347         saveState();
 348         //JCP 20-10-08 Undo redo implementation
 349         createContour( 7 );
 350 }
 351 // RaC 09-09 --------------------------------------
 352
 353 // RaC 10-09 --------------------------------------
 354 void wxContourMainFrame::onCreateContourPolygon( ){
 355     //JCP 20-10-08 Undo redo implementation
 356         saveState();
 357         //JCP 20-10-08 Undo redo implementation
 358         createContour( 10 );
 359 }
 360 // RaC 10-09 --------------------------------------
 361
 362 //------------------------------------------------------------------------------------------------------------
 363
 364 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 365 {
 366         //Creating the manualBaseModel and including in the model
 367         manualBaseModel * manModelContour = factoryManualContourModel(panel );
 368
 369         std::vector<int> instantVector;
 370         _instantPanel->getInstant( instantVector );
 371         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 372
 373         /*std::vector<int> instantVector;
 374         _instantPanel->getInstant( instantVector );
 375         std::string theName;
 376         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 377         bool addedModel = theName.compare("") != 0;//??
 378
 379         if( addedModel )
 380         {
 381                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 382                 _theViewPanel->getSpacing(spc);
 383                 //Adding the manualContourControler to interface objects structure
 384                 //Adding the manualViewContour to interface objects structure
 385                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 386                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 387         }
 388 }
 389 void wxContourMainFrame :: createContour( int typeContour )
 390 {
 391         //Creating the manualContourModel and including in the model
 392         manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 393
 394         std::vector<int> instantVector;
 395         _instantPanel->getInstant( instantVector );
 396         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 397
 398         /*std::vector<int> instantVector;
 399         _instantPanel->getInstant( instantVector );
 400         std::string theName;
 401         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 402         bool addedModel = theName.compare("") != 0;//??
 403         if( addedModel )
 404         {
 405                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 406                 _theViewPanel->getSpacing(spc);
 407                 //Adding the manualContourControler to interface objects structure
 408                 //Adding the manualViewContour to interface objects structure
 409                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 410                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 411         }
 412
 413 }
 414 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 415
 416         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 417         manualBaseModel *manModelContour=NULL;
 418         manModelContour = manModelContourBullEye;
 419         if (panel!=NULL){
 420                 int iCrown,sizeCrowns,iSector,sizeSectors;
 421                 double radioA,radioB,ang,angDelta ;
 422                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 423                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 424                 {
 425                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 426                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 427                         if (iCrown==sizeCrowns-1)
 428                         {
 429                                 radioA  = 0;
 430                         } else {
 431                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 432                         }
 433                         radioA=radioA/100.0;
 434                         radioB=radioB/100.0;
 435                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 436                         {
 437                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 438                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 439                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 440                         } // for iSector
 441                 } // for iCrown
 442         } // if _panelBullEyeOptions
 443
 444         return manModelContour;
 445 }
 446 void wxContourMainFrame :: saveState(){
 447
 448         std::string temp = kernelManager->saveState();
 449         saveFileWithContours(temp);
 450 }
 451
 452 void wxContourMainFrame::onDeleteContour(){
 453         //JCP 20-10-08 Undo redo implementation
 454                 saveState();
 455                 //JCP 20-10-08 Undo redo implementation
 456
 457                 std::vector<std::string> lstKeyNameToBeErase;
 458                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 459                 deleteContours( lstKeyNameToBeErase );
 460 /*JCP 19 - 11 - 08
 461                 int i,size=_sceneManager->getSelectedObjects().size();
 462                 for(i=0;i<size;i++)
 463                 {
 464                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 465                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 466                         if ( ispartofstaticlist>=0 )
 467                         {
 468                                 std::vector<int> tempVector;
 469                                 _instantPanel->getInstant( tempVector );
 470                                 Instant instant(&tempVector);
 471                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 472                         }
 473                 }
 474
 475                 std::vector<std::string> lstKeyName;
 476                 std::vector<std::string> lstKeyNameActualSlice;
 477                 std::vector<std::string> lstKeyNameToBeErase;
 478
 479                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 480                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 481                 int k,kSize=lstKeyNameToBeErase.size();
 482                 int j,jSize=lstKeyNameActualSlice.size();
 483                 bool ok;
 484                 for (k=0;k<kSize; k++)
 485                 {
 486                         ok=false;
 487                         for (j=0;j<jSize; j++)
 488                         {
 489                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 490                                 {
 491                                         ok=true;
 492                                 }
 493                         } // for j
 494                         if (ok==true)
 495                         {
 496                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 497                         } // if ok
 498                 } // for k
 499
 500                 deleteContours( lstKeyName );
 501 JCP 19 - 11 - 08*/
 502 }
 503
 504 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 505 {
 506         int i,size=keyNamesVector.size();
 507         for (i=0;i<size;i++)
 508         {
 509                 deleteContour( keyNamesVector[i] );
 510         }
 511 }
 512
 513 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
 514         /*
 515         manualContourModel                      * cModel;
 516         manualViewBaseContour           * cViewer;
 517         manualContourBaseControler      * cControler;
 518
 519         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 520         cControler      = conwrapviewControl->getControler();*/
 521
 522         //JCP 21 - 11 - 2008
 523         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 524         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 525
 526         if (isedit  && ispartofstaticlst)
 527         {
 528                 _theViewPanel->removeFromScene(theKeyName);
 529
 530                 kernelManager->deleteCModel(theKeyName);
 531                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 532                 //cViewer               = conwrapviewControl->getViewer();
 533                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 534                 //cControler* conwrapviewControl->getControler();
 535         //      delete cModel;
 536         //      delete cViewer;
 537         //      delete cControler;
 538         } // if editable
 539 //JCP 21 - 11 - 08
 540 }
 541
 542 void wxContourMainFrame::onDeleteContoursActSlice(){
 543         //JCP 20-10-08 Undo redo implementation
 544         saveState();
 545         //JCP 20-10-08 Undo redo implementation
 546         deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 547 }
 548 void wxContourMainFrame::onDeleteAllContours(){
 549         //JCP 20-10-08 Undo redo implementation
 550         saveState();
 551         deleteAllContours();
 552 }
 553 void wxContourMainFrame::deleteAllContours(){
 554         //JCP 20-10-08 Undo redo implementation
 555
 556         wxBusyCursor wait;
 557         std::vector<int> tempVector;
 558         _instantPanel->getInstant( tempVector );
 559
 560 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 561 //              the values in GetStart and GetEnd will then not be initialize also.
 562 //              We use instead the values given when initializing the _deletepanel.
 563
 564         //int minZ = _mbarrangeDeleteAll->GetStart();
 565         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 566         int minZ, maxZ;
 567
 568         minZ = 0;
 569         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 570
 571 //JCP --08-09-2008
 572
 573         _theViewPanel->getSceneManager()->removeSceneContours( );
 574         _theViewPanel->getSceneManager()->removeAllOutlines();
 575         kernelManager->removeAllOutlines();
 576 //JCP --08-09-2008
 577         /*
 578         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 579         {
 580                 _theViewPanel->getSceneManager()->removeSceneContours( );
 581                 _modelManager->removeAllOutlines();
 582                 _theViewPanel->getSceneManager()->removeAllOutlines();
 583
 584         } else {
 585                 for ( z=minZ ; z<=maxZ ; z++)
 586                 {
 587                         tempVector[1]=z;
 588                         Instant instant(&tempVector);
 589                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 590
 591                         sizeLstContourThings = lstContourThings.size();
 592                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 593                         {
 594                                 ContourThing **contourthing = lstContourThings[ii];
 595                                 deleteContour( (*contourthing)->getName() );
 596                         } //for ii
 597                 }// for z
 598         } // if
 599 JCP --08-09-2008 */
 600 }
 601
 602 void wxContourMainFrame::setConceptValue( std::string name, int value ){
 603         _instantPanel->setConceptValue(name, value);
 604 }
 605
 606
 607 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
 608         return _instantPanel->getLastConceptData();
 609 }
 610
 611
 612 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
 613         return _instantPanel->getIfConceptCheckedAt( name, pos );
 614 }
 615
 616
 617
 618 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
 619 {
 620         vtkImageData * mask;
 621         vtkImageData * value;
 622         this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
 623
 624         std::vector<int> nTypeView;
 625         nTypeView.push_back(5);
 626         nTypeView.push_back(1);
 627         nTypeView.push_back(2);
 628         nTypeView.push_back(0);
 629
 630         wxFrame *frame = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
 631         wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
 632         m_mgr_noteBookViewerResult->SetManagedWindow(frame);
 633
 634         wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(frame, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
 635         m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 636
 637         wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
 638         wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
 639
 640
 641         noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
 642         noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
 643         m_mgr_noteBookViewerResult->Update();
 644         frame->Show();
 645 }
 646
 647
 648
 649
 650 void wxContourMainFrame::changeInstant()
 651 {
 652                 std::vector<int> instantVect;
 653                 _instantPanel->getInstant( instantVect );
 654                 int actualSlice = instantVect[1];
 655
 656                 kernelManager->setInstant(instantVect);
 657
 658             // Refresh Mask image
 659                 if(_viewMaskImage!=NULL){
 660                         _viewMaskImage->SetZ(actualSlice);
 661                         if (_viewMaskImagePanel->IsVisible()==true)
 662                         {
 663                                 vtkImageData *mask, *value;
 664                                 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
 665                                 _viewMaskImage->onThreshold();
 666                         }
 667                 }
 668
 669         // Refresh Threshold image
 670                 if(_viewThresholdImage!=NULL){
 671                         _viewThresholdImage->SetZ(actualSlice);
 672                         if (_viewThresholdImagePanel->IsVisible()==true){
 673                                 _viewThresholdImage->onThreshold();
 674                         }
 675                 }
 676
 677         // Refresh Threshold image
 678                 if(_viewColorLayerImage!=NULL){
 679                         _viewColorLayerImage->SetZ(actualSlice);
 680                         if (_viewColorLayerImagePanel->IsVisible()==true){
 681                                 _viewColorLayerImage->onThreshold();
 682                         }
 683                 }
 684
 685                 updateInstantOutlines();
 686                 updateInstantImageData();
 687                 updateInstantAxes();
 688 }
 689
 690
 691
 692 void wxContourMainFrame :: updateInstantOutlines()
 693 {
 694         _theViewPanel->removeSceneContours();
 695         _theViewPanel->addNameWrapperToScene();
 696
 697         //for( int i=0; i<size; i++)
 698         //{
 699         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 700         //}
 701 }
 702
 703 int wxContourMainFrame::getNamesWrappingSize(){
 704         return kernelManager->getNamesWrappingSize();
 705 }
 706 std::string wxContourMainFrame::getNameWrapping(int i){
 707         return kernelManager->getNameWrapping(i);
 708 }
 709
 710 void wxContourMainFrame::updateInstantImageData()
 711 {
 712         std::vector<int> inst;
 713         _instantPanel->getInstant(inst);
 714
 715         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 716         if(img!=NULL){
 717                 _theViewPanel->changeImage(img);
 718                 showAxis(false);
 719         }else{
 720                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 721                 _theViewPanel->setImageSlice(z);
 722         }
 723 }
 724
 725 void wxContourMainFrame::updateInstantAxes()
 726 {
 727 }
 728
 729
 730 void wxContourMainFrame::onChangeDeep(int val){
 731         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 732         changeInstant();
 733 }
 734
 735
 736 void wxContourMainFrame::onCopy(){
 737         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 738
 739         std::vector<int> tempVector;
 740         _instantPanel->getInstant( tempVector );
 741     _performingOperation->reset();
 742         _performingOperation->setStartCommand( COPY );
 743         _performingOperation->setStartOperationInstantVector( tempVector );
 744         _performingOperation->setKeyNamesOperationElems( currentSelection );
 745 }
 746
 747 void wxContourMainFrame::onPaste(){
 748
 749
 750         char theStartCommand = _performingOperation->getStartCommand();
 751         if (  theStartCommand == COPY )
 752         {
 753                 //JCP 20-10-08 Undo redo implementation
 754                 saveState();
 755                 //JCP 20-10-08 Undo redo implementation
 756                 std::vector<int> tempVector;
 757                 _instantPanel->getInstant( tempVector );
 758                 _performingOperation->setEndOperationInstantVector ( tempVector );
 759                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 760                 int i,size = elems.size();
 761                 for( i=0; i<size; i++ )
 762                 {
 763                         createCopyContourOf( elems[i], tempVector, i>0 );
 764                 }
 765         }
 766 }
 767 void wxContourMainFrame::onUndo(){
 768         std::string filename;
 769         if(kernelManager->onUndoSaveFile(filename)){
 770                 saveFileWithContours(filename);
 771         }
 772         if(kernelManager->onUndo(filename)){
 773                 loadState(filename);
 774         }
 775 }
 776 void wxContourMainFrame::onRedo(){
 777         std::string filename;
 778         if(kernelManager->onRedo(filename)){
 779                 loadState(filename);
 780         }
 781
 782 }
 783 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 784 {
 785         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 786         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 787         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 788 }
 789
 790 ///AD: 03-09    Copy the object and apply the given transformation
 791 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 792 {
 793         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 794         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 795
 796         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 797         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 798
 799         double pnt1X = refPoint1->GetX();
 800         double pnt1Y = refPoint1->GetY();
 801 //      double pnt1Z = refPoint1->GetZ();
 802         double pnt2X = refPoint2->GetX();
 803         double pnt2Y = refPoint2->GetY();
 804 //      double pnt2Z = refPoint2->GetZ();
 805
 806         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 807         vtkTransform *t = vtkTransform::New();
 808
 809         t->PostMultiply();
 810         t->Identity();
 811         t->Translate(-pnt1X, -pnt1Y, 0);
 812         t->RotateZ(-angle);
 813         t->Scale(-1,1,1);
 814         t->RotateZ(angle);
 815         t->Translate(pnt1X, pnt1Y, 0);
 816         t->Update();
 817
 818         int i,size=manualModel->GetSizeLstPoints();
 819         for (i=0;i<size;i++)
 820         {
 821                 manualPoint * mp = manualModel->GetManualPoint(i);
 822                 float vecIn[3];
 823                 float vecOut[3];
 824                 vecIn[0]=mp->GetX();
 825                 vecIn[1]=mp->GetY();
 826                 vecIn[2]=mp->GetZ();
 827                 t->TransformPoint( vecIn, vecOut );
 828                 mp->SetPointX( vecOut[0] );
 829                 mp->SetPointY( vecOut[1] );
 830                 mp->SetPointZ( vecOut[2] );
 831         }
 832
 833         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 834 }
 835
 836 void wxContourMainFrame ::loadState(std::string filename){
 837         char tmp[255];
 838         FILE *pFile=fopen(filename.c_str(),"r+");
 839
 840         fscanf(pFile,"%s",tmp); // --CreaContour--
 841
 842         fscanf(pFile,"%s",tmp); // Version
 843         fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 844
 845         deleteAllContours();
 846
 847         loadContours(pFile, false);
 848         loadContours(pFile, true);
 849
 850         fclose(pFile);
 851 }
 852
 853 void wxContourMainFrame ::loadContours( FILE *pFile, bool staticContour )
 854 {
 855         char tmp[255];
 856
 857         fscanf(pFile,"%s",tmp); // ImageDimensions
 858         fscanf(pFile,"%s",tmp); // X
 859         fscanf(pFile,"%s",tmp); // Y
 860         fscanf(pFile,"%s",tmp); // Z
 861
 862         fscanf(pFile,"%s",tmp); // ImageSpacing
 863         fscanf(pFile,"%s",tmp); // X
 864         fscanf(pFile,"%s",tmp); // Y
 865         fscanf(pFile,"%s",tmp); // Z
 866
 867         fscanf(pFile,"%s",tmp); // NumberOfContours
 868         fscanf(pFile,"%s",tmp); // ##
 869         int numberOfContours = atoi(tmp);
 870
 871         std::vector<int> instantVector;
 872         int typeContourModel;
 873         manualBaseModel *manModelContour;
 874         int typeView;
 875
 876         int i;
 877         for (i=0;i<numberOfContours;i++)
 878         {
 879                 instantVector.clear();
 880                 fscanf(pFile,"%s",tmp); // Instant
 881                 fscanf(pFile,"%s",tmp); // 1
 882                 instantVector.push_back( atoi(tmp) );
 883                 fscanf(pFile,"%s",tmp); // 2
 884                 instantVector.push_back( atoi(tmp) );
 885                 fscanf(pFile,"%s",tmp); // 3
 886                 instantVector.push_back( atoi(tmp) );
 887                 fscanf(pFile,"%s",tmp); // 4
 888                 instantVector.push_back( atoi(tmp) );
 889                 fscanf(pFile,"%s",tmp); // 5
 890                 instantVector.push_back( atoi(tmp) );
 891                 fscanf(pFile,"%s",tmp); // 6
 892                 instantVector.push_back( atoi(tmp) );
 893
 894                 fscanf(pFile,"%s",tmp); // TypeContourModel
 895                 fscanf(pFile,"%s",tmp); // ##
 896                 typeContourModel = atoi(tmp);
 897
 898                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
 899                 manModelContour->Open(pFile);
 900
 901                 fscanf(pFile,"%s",tmp); // TypeView
 902                 fscanf(pFile,"%s",tmp); // ##
 903                 typeView = atoi(tmp);
 904
 905                 std::string theName;
 906                 theName = kernelManager->createOutline( manModelContour, instantVector );
 907                 bool addedModel = theName.compare("") != 0;
 908                 if( addedModel )
 909                 {
 910                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 911                         _theViewPanel->getSpacing(spc);
 912                         //Adding the manualContourControler to interface objects structure
 913                         //Adding the manualViewContour to interface objects structure
 914                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 915                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
 916                 }
 917
 918                 if (staticContour==true)
 919                 {
 920                         Instant instant(&instantVector);
 921                         kernelManager->changeContourOfManager( theName , &instant );
 922                 }
 923         }// for  numberOfContours
 924 }
 925
 926 void wxContourMainFrame::onLoad()
 927 {
 928         std::string fileNameContourROI = GetFileLocation();
 929 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 930         if(GetFileLocation().empty())
 931         {
 932 //------------------------------------------------------------------------------------------------------------
 933                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 934                 if (dialog.ShowModal() == wxID_OK)
 935                 {
 936                         fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 937                 }
 938         }
 939
 940         onLoadContours(fileNameContourROI);
 941 }
 942
 943 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI){
 944         char tmp[255];
 945         char tmpD[255];
 946
 947         FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
 948
 949
 950 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
 951         if(pFile != NULL)
 952         {
 953 //------------------------------------------------------------------------------------------------------------
 954         fileNameContourROI.append("data");
 955                 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
 956                 if(pFileData != NULL)
 957                 {
 958                         fscanf(pFileData,"%s",tmpD); // --CreaContour--
 959                         fscanf(pFileData,"%s",tmpD); // Version
 960                         fscanf(pFileData,"%s",tmpD); // 1.0.2 || 1.0.1 || 1.0.0
 961
 962                         fscanf(pFileData,"%s",tmpD); // onePixelSize
 963                         fscanf(pFileData,"%s",tmpD); // #
 964                         _onePixelSize = atof(tmpD);
 965                         fscanf(pFileData,"%s",tmpD); // NumberOfContours
 966                         fscanf(pFileData,"%s",tmpD); // #
 967                 }
 968
 969                 fscanf(pFile,"%s",tmp); // --CreaContour--
 970
 971                 fscanf(pFile,"%s",tmp); // Version
 972                 fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 973                 std::string version(tmp);
 974
 975                 //AD:02-06-09
 976                 if (version=="1.0.2")
 977                 {
 978                         openContours(pFile,pFileData,2,false);
 979                         openContours(pFile,pFileData,2,true);   //Load StaticContours
 980                 }
 981
 982                 //AD:02-06-09
 983                 else if (version=="1.0.1")
 984                 {
 985                         openContours(pFile,pFileData,1,false); //Skips ImageDimensions and ImageSpacing
 986                         openContours(pFile,pFileData,1,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
 987                 }
 988
 989                 //AD:02-06-09
 990                 else if (version=="1.0.0")
 991                 {
 992                         openContours(pFile,pFileData,1,false); //Skips ImageDimensions and ImageSpacing
 993                 }
 994
 995                 fclose(pFile);
 996
 997                 if(pFileData != NULL)
 998                 {
 999                         fclose(pFileData);
1000                 }
1001         }
1002         _theViewPanel->getSceneManager()->removeSceneContours();
1003         changeInstant();
1004
1005 }
1006
1007 void wxContourMainFrame::onImport(){
1008         std::string filename, filenamecontours;
1009         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
1010
1011         if (dialog.ShowModal() == wxID_OK)
1012         {
1013                 filename = dialog.GetPath().mb_str();
1014                 filenamecontours = kernelManager->parseOsirixFile(filename);
1015
1016                 if(filenamecontours.compare("") != 0){
1017                         onLoadContours(filenamecontours);
1018                 }
1019
1020         }
1021 }
1022 void wxContourMainFrame::onTest(){
1023         std::string filename, filenamecontours;
1024         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1025
1026         if (dialog.ShowModal() == wxID_OK)
1027         {
1028                 filename = dialog.GetPath().mb_str();
1029                 std::cout << "This is the filename: " << filename << std::endl;
1030         }
1031 }
1032
1033
1034 //AD: 29-05-09
1035 void wxContourMainFrame::onSave(){
1036 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1037         if(GetFileLocation().empty())
1038         {
1039 //------------------------------------------------------------------------------------------------------------
1040                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1041                 if (dialog.ShowModal() == wxID_OK)
1042                 {
1043                         std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1044                         kernelManager->setCurrentFileName(fileNameContourROI);
1045                         saveFileWithContours( fileNameContourROI );
1046                 }
1047         }
1048 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1049         else
1050         {
1051                 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1052                 std::string fileNameContourROI = GetFileLocation();
1053                 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1054                 kernelManager->setCurrentFileName(fileNameContourROI);
1055                 saveFileWithContours( fileNameContourROI);
1056         }
1057 //------------------------------------------------------------------------------------------------------------
1058 }
1059
1060 //AD: 29-05-09
1061 void wxContourMainFrame::saveFileWithContours( std::string filename )
1062 {
1063
1064         FILE *pFile=fopen(filename.c_str(),"w+");
1065
1066 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1067         filename.append("data");
1068         std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1069         FILE *pFileData=fopen(filename.c_str(),"w+");
1070 //------------------------------------------------------------------------------------------------------------
1071
1072         std::vector< std::string > lstNameThings;
1073         int i,sizeLstNameThings;
1074
1075         fprintf(pFile,"--CreaContour--\n");
1076         fprintf(pFile,"Version %s\n", "1.0.2" );
1077
1078 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1079         fprintf(pFileData,"--CreaContour--\n");
1080         fprintf(pFileData,"Version %s\n", "1.0.2" );
1081         fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1082
1083 //------------------------------------------------------------------------------------------------------------
1084
1085         vtkImageData *image = _images[0];
1086
1087         int dimRange[3];
1088         image->GetDimensions(dimRange);
1089
1090         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1091
1092         double spaRange[3];
1093         image->GetSpacing(spaRange);
1094
1095         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1096
1097         // Normal Contours
1098
1099         lstNameThings           = kernelManager->GetLstNameThings();
1100         sizeLstNameThings       = lstNameThings.size();
1101         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1102
1103 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1104         fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1105 //------------------------------------------------------------------------------------------------------------
1106
1107         for (i=0 ; i<sizeLstNameThings ; i++)
1108         {
1109 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1110                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1111                 double sizeInPixel = manualModel ->GetPathSize();
1112                 double realContourSize = sizeInPixel*_onePixelSize;
1113                 manualModel ->SetRealSize(realContourSize);
1114 //------------------------------------------------------------------------------------------------------------
1115
1116         //int size= kernelManager->GetLstNameThings().size();
1117
1118                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1119                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1120         }// for i
1121
1122         //-- Static Contours
1123
1124         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1125
1126         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1127
1128         lstNameThings           = kernelManager->GetLstNameThingsStatic();
1129         sizeLstNameThings       = lstNameThings.size();
1130         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1131
1132 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1133         fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1134 //------------------------------------------------------------------------------------------------------------
1135
1136         for (i=0 ; i<sizeLstNameThings ; i++)
1137         {
1138                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1139                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1140         }// for i
1141         fclose(pFile);
1142         fclose(pFileData);
1143 }
1144
1145 //AD:04-06-09
1146 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, int version, bool staticContour )
1147 {
1148         char tmp[255];
1149
1150         vtkImageData *image = _images[0];
1151         int imageDim[3];
1152         double imageSpac[3];
1153         int tempDim[3];
1154         double tempSpac[3];
1155
1156         bool compatible = true;
1157
1158         //Version==2
1159         if (version==2)
1160         {
1161                 image->GetDimensions(imageDim);
1162                 image->GetSpacing(imageSpac);
1163
1164                 fscanf(pFile,"%s",tmp); // ImageDimensions
1165                 fscanf(pFile,"%s",tmp); // X
1166                 tempDim[0] = atoi(tmp);
1167                 fscanf(pFile,"%s",tmp); // Y
1168                 tempDim[1] = atoi(tmp);
1169                 fscanf(pFile,"%s",tmp); // Z
1170                 tempDim[2] = atoi(tmp);
1171
1172                 fscanf(pFile,"%s",tmp); // ImageSpacing
1173                 fscanf(pFile,"%s",tmp); // X
1174                 tempSpac[0] = atof(tmp);
1175                 fscanf(pFile,"%s",tmp); // Y
1176                 tempSpac[1] = atof(tmp);
1177                 fscanf(pFile,"%s",tmp); // Z
1178                 tempSpac[2] = atof(tmp);
1179
1180                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1181                 if (imageDim[0]!=tempDim[0] || imageDim[1]!=tempDim[1] || imageSpac[0]!=tempSpac[0] || imageSpac[1]!=tempSpac[1])
1182                 {
1183                         compatible = false;
1184                 }
1185         }
1186
1187         fscanf(pFile,"%s",tmp); // NumberOfContours
1188         fscanf(pFile,"%s",tmp); // ##
1189         int numberOfContours = atoi(tmp);
1190
1191         std::vector<int> instantVector;
1192         int typeContourModel;
1193         manualBaseModel *manModelContour;
1194         int typeView;
1195
1196         if (compatible==true)
1197         {
1198                 int i;
1199                 for (i=0;i<numberOfContours;i++)
1200                 {
1201                         instantVector.clear();
1202                         fscanf(pFile,"%s",tmp); // Instant
1203
1204                         fscanf(pFile,"%s",tmp); // 1
1205                         instantVector.push_back( atoi(tmp) );
1206                         fscanf(pFile,"%s",tmp); // 2
1207                         instantVector.push_back( atoi(tmp) );
1208                         fscanf(pFile,"%s",tmp); // 3
1209                         instantVector.push_back( atoi(tmp) );
1210                         fscanf(pFile,"%s",tmp); // 4
1211                         instantVector.push_back( atoi(tmp) );
1212                         fscanf(pFile,"%s",tmp); // 5
1213                         instantVector.push_back( atoi(tmp) );
1214                         fscanf(pFile,"%s",tmp); // 6
1215                         instantVector.push_back( atoi(tmp) );
1216
1217
1218                         fscanf(pFile,"%s",tmp); // TypeContourModel
1219                         fscanf(pFile,"%s",tmp); // ##
1220                         typeContourModel = atoi(tmp);
1221
1222                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1223                         manModelContour->Open(pFile);
1224                         if(pFileData != NULL)
1225                         {
1226                                 manModelContour->OpenData(pFileData);
1227                         }
1228
1229                         fscanf(pFile,"%s",tmp); // TypeView
1230                         fscanf(pFile,"%s",tmp); // ##
1231                         typeView = atoi(tmp);
1232
1233                         std::string theName;
1234                         theName = kernelManager->createOutline( manModelContour, instantVector );
1235                         bool addedModel = theName.compare("") != 0;
1236                         if( addedModel )
1237                         {
1238                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1239                                 _theViewPanel->getSpacing(spc);
1240                                 //Adding the manualContourControler to interface objects structure
1241                                 //Adding the manualViewContour to interface objects structure
1242                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1243                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1244                         }
1245
1246                         if (staticContour) //StaticContours (will appear in all slices)
1247                         {
1248                                 Instant instant(&instantVector);
1249                                 kernelManager->changeContourOfManager( theName , &instant );
1250                         }
1251
1252                 }// for  numberOfContours
1253         }
1254
1255         else if (compatible==false)
1256         {
1257                 wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(260,160));
1258                 wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1259                 wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1260
1261                 wxString lstOptOperation[2];
1262                 lstOptOperation[0]=_T("By Dimension");
1263                 lstOptOperation[1]=_T("By Spacing");
1264                 wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation,  2, wxRA_SPECIFY_COLS);
1265
1266                 dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1267                 dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1268                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1269                 dialSizer->Add(radioOpts,0,wxGROW);
1270                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1271                 dialSizer->Add(buttonsSizer,0,wxGROW);
1272                 dial->SetSizer(dialSizer, true);
1273                 dial->Layout();
1274                 dial->ShowModal();
1275
1276                 int typeOfTransformation = -1;
1277                 bool transform = false;
1278
1279                 if (dial->GetReturnCode() == wxID_OK)
1280                 {
1281                         typeOfTransformation = radioOpts->GetSelection();
1282                         transform = true;
1283                 }
1284
1285                 int i;
1286                 for (i=0;i<numberOfContours;i++)
1287                 {
1288                         instantVector.clear();
1289                         fscanf(pFile,"%s",tmp); // Instant
1290
1291                         fscanf(pFile,"%s",tmp); // 1
1292                         instantVector.push_back( atoi(tmp) );
1293                         fscanf(pFile,"%s",tmp); // 2
1294                         instantVector.push_back( atoi(tmp) );
1295                         fscanf(pFile,"%s",tmp); // 3
1296                         instantVector.push_back( atoi(tmp) );
1297                         fscanf(pFile,"%s",tmp); // 4
1298                         instantVector.push_back( atoi(tmp) );
1299                         fscanf(pFile,"%s",tmp); // 5
1300                         instantVector.push_back( atoi(tmp) );
1301                         fscanf(pFile,"%s",tmp); // 6
1302                         instantVector.push_back( atoi(tmp) );
1303
1304                         fscanf(pFile,"%s",tmp); // TypeContourModel
1305                         fscanf(pFile,"%s",tmp); // ##
1306                         typeContourModel = atoi(tmp);
1307
1308                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1309                         manModelContour->Open(pFile);
1310                         if(pFileData != NULL)
1311                         {
1312                                 manModelContour->OpenData(pFileData);
1313                         }
1314                         if (transform==true)
1315                         {
1316                                 if (typeOfTransformation==0)
1317                                 {
1318                                         double transX, transY;
1319                                         transX = (double) imageDim[0]/tempDim[0];
1320                                         transY = (double) imageDim[1]/tempDim[1];
1321                                         manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1322                                 }
1323                                 else if (typeOfTransformation==1)
1324                                 {
1325                                         double transX, transY;
1326                                         transX = (double) tempSpac[0]/imageSpac[0];
1327                                         transY = (double) tempSpac[1]/imageSpac[1];
1328                                         manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1329                                 }
1330                         }
1331
1332                         fscanf(pFile,"%s",tmp); // TypeView
1333                         fscanf(pFile,"%s",tmp); // ##
1334                         typeView = atoi(tmp);
1335
1336                         std::string theName;
1337                         theName = kernelManager->createOutline( manModelContour, instantVector );
1338                         bool addedModel = theName.compare("") != 0;
1339                         if( addedModel )
1340                         {
1341                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1342                                 _theViewPanel->getSpacing(spc);
1343                                 //Adding the manualContourControler to interface objects structure
1344                                 //Adding the manualViewContour to interface objects structure
1345                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1346                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1347                         }
1348
1349                         if (staticContour) //StaticContours (will appear in all slices)
1350                         {
1351                                 Instant instant(&instantVector);
1352                                 kernelManager->changeContourOfManager( theName , &instant );
1353                         }
1354                 }// for  numberOfContours
1355         }
1356 }
1357
1358 void wxContourMainFrame::RefreshInterface(){
1359         changeInstant();
1360         _theViewPanel->RefreshInterface();
1361         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1362         //wxvtk2dbaseview->Refresh();
1363 }
1364
1365 vtkImageData* wxContourMainFrame::getImageData(){
1366         return _theViewPanel->getImageData();
1367 }
1368
1369 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1370 {
1371         //JCP 20-10-08 Undo redo implementation
1372         saveState();
1373         //JCP 20-10-08 Undo redo implementation
1374
1375         wxBusyCursor wait;
1376         int                                     x                                       = _theViewPanel->GetX();
1377         int                                     y                                       = _theViewPanel->GetY();
1378         int                                     z                                       = _theViewPanel->GetZ();
1379         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1380         RefreshInterface();
1381 }
1382
1383 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1384 {
1385         int typeofcontour = 1;
1386         //Image Data
1387         vtkImageData    *imagedata      = getImageData();
1388
1389         //Tipo de pixeles a utilizar internamente en ITK
1390         typedef   float  InternalPixelType;
1391         const     unsigned int    Dimension = 2;
1392         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1393
1394         //Tipo de pixeles de salida 1
1395         typedef unsigned char OutputPixelType;
1396         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1397
1398         //Tipo de pixeles de salida 2
1399         typedef unsigned short OutputPixelType2;
1400         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1401
1402         //DefiniciÛn del thresholder
1403         typedef itk::BinaryThresholdImageFilter<
1404                                                         InternalImageType,
1405                                                         OutputImageType    >    ThresholdingFilterType;
1406
1407         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1408         typedef itk::CastImageFilter<
1409                                 OutputImageType, OutputImageType2 >  CastFilterType;
1410
1411         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1412         typedef itk::CastImageFilter<
1413                                 OutputImageType2, InternalImageType >  CastFilterType2;
1414
1415         //Tercer tipo de conversiÛn
1416         typedef itk::RescaleIntensityImageFilter<
1417                                                                 InternalImageType,
1418                                                                 OutputImageType >   CastFilterType3;
1419
1420         //Cuarto tipo de conversiÛn
1421         typedef itk::RescaleIntensityImageFilter<
1422                                                                 OutputImageType,
1423                                                                 OutputImageType >   CastFilterType4;
1424
1425         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1426
1427         thresholder->SetLowerThreshold( 0.0 );
1428         thresholder->SetUpperThreshold( 128 );
1429
1430         thresholder->SetOutsideValue(  255  );
1431         thresholder->SetInsideValue(  0 );
1432
1433         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1434         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1435         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1436         typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1437
1438         ConnectorType::Pointer connector= ConnectorType::New();
1439         ConnectorType2::Pointer connector2= ConnectorType2::New();
1440
1441
1442         CastFilterType::Pointer filter=CastFilterType::New();
1443         CastFilterType2::Pointer filter2=CastFilterType2::New();
1444
1445         connector->SetInput( imagedata );
1446         filter2->SetInput(connector->GetOutput());
1447
1448         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1449                                                                 InternalImageType,
1450                                                                 InternalImageType >  SmoothingFilterType;
1451
1452         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1453
1454         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1455                                                                 InternalImageType,
1456                                                                 InternalImageType >  GradientFilterType;
1457
1458         typedef   itk::SigmoidImageFilter<
1459                                                                 InternalImageType,
1460                                                                 InternalImageType >  SigmoidFilterType;
1461
1462         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1463
1464         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1465
1466         sigmoid->SetOutputMinimum(  0.0  );
1467         sigmoid->SetOutputMaximum(  255.0  );
1468
1469
1470         typedef  itk::FastMarchingImageFilter<
1471                                                                 InternalImageType,
1472                                                                 InternalImageType >    FastMarchingFilterType;
1473
1474
1475         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1476
1477         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1478                                         InternalImageType >    GeodesicActiveContourFilterType;
1479         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1480                                                                                 GeodesicActiveContourFilterType::New();
1481
1482         typedef  itk::ZeroCrossingImageFilter<
1483                                                                 InternalImageType,
1484                                                                 InternalImageType >    ZeroCrossingFilterType;
1485         ZeroCrossingFilterType::Pointer zeroCrossing =
1486                                                         ZeroCrossingFilterType::New();
1487
1488         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1489
1490         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1491         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1492         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1493
1494         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1495         int it=atoi(  crea::wx2std(iter).c_str() );
1496         geodesicActiveContour->SetNumberOfIterations( it );
1497
1498         smoothing->SetInput( filter2->GetOutput() );
1499         gradientMagnitude->SetInput( smoothing->GetOutput() );
1500         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1501         fastMarching->SetInput( sigmoid->GetOutput() );
1502         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1503         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1504
1505         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1506         //thresholder->SetInput( zeroCrossing->GetOutput() );
1507         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1508         connector2->SetInput( thresholder->GetOutput()  );
1509
1510
1511         smoothing->SetTimeStep( 0.125 );
1512         smoothing->SetNumberOfIterations(  5 );
1513         smoothing->SetConductanceParameter( 9.0 );
1514
1515
1516         const double sigma = atof(  crea::wx2std(sigm).c_str() );
1517         gradientMagnitude->SetSigma(  sigma  );
1518
1519         const double alpha =  atof(  crea::wx2std(alf).c_str() );
1520         const double beta  =  atof(  crea::wx2std(bet).c_str() );
1521
1522         sigmoid->SetAlpha( alpha );
1523         sigmoid->SetBeta(  beta  );
1524
1525         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1526         typedef FastMarchingFilterType::NodeType       NodeType;
1527
1528         NodeContainer::Pointer seeds = NodeContainer::New();
1529
1530         InternalImageType::IndexType  seedPosition;
1531         seedPosition[0] = x;
1532         seedPosition[1] = y;
1533
1534         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1535
1536         NodeType node;
1537
1538         const double seedValue = - initialDistance;
1539
1540         node.SetValue( seedValue );
1541         node.SetIndex( seedPosition );
1542
1543         seeds->Initialize();
1544         seeds->InsertElement( 0, node );
1545
1546         fastMarching->SetTrialPoints( seeds );
1547
1548         fastMarching->SetSpeedConstant( 1.0 );
1549
1550         fastMarching->SetOutputSize(
1551                         connector->GetOutput()->GetBufferedRegion().GetSize() );
1552
1553         fastMarching->SetStoppingValue( 800 );
1554         try
1555     {
1556
1557         connector2->Update();
1558         vtkImageData *idata = connector2->GetOutput();
1559
1560         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1561
1562         cntVTK->SetInput( idata );
1563
1564         cntVTK->SetNumberOfContours( 1 );
1565         cntVTK->SetValue( 0, 255 );
1566         cntVTK->Update( );
1567         cntVTK->UpdateInformation();
1568
1569         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1570         cpd->SetInput( cntVTK->GetOutput( ) );
1571         cpd->Update( );
1572         cpd->UpdateInformation();
1573
1574         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1575         conn->SetExtractionModeToLargestRegion( );
1576         conn->SetInput( cpd->GetOutput( ) );
1577         conn->Update( );
1578         conn->UpdateInformation();
1579
1580         vtkStripper* vtkstripper = vtkStripper::New( );
1581         vtkstripper->SetInput( conn->GetOutput() );
1582         vtkstripper->Update();
1583         vtkstripper->UpdateInformation();
1584
1585
1586         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1587         //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1588         polyDataResult->Update( );
1589         polyDataResult->UpdateInformation();
1590
1591         //EED
1592                 /*
1593         ofstream myfile;
1594         myfile.open ("C:/Creatis/example.txt");
1595         myfile << "\n";
1596         polyDataResult->Print(myfile);
1597         myfile << "-------------------------------------\n";
1598         polyDataResult->GetLines()->Print(myfile);
1599         myfile.close();*/
1600
1601         cntVTK          -> Delete();
1602         cpd                     -> Delete();
1603         conn            -> Delete();
1604
1605
1606         //--Calculating control points
1607
1608         std::vector<double> vecX;
1609         std::vector<double> vecY;
1610         std::vector<double> vecXo;
1611         std::vector<double> vecYo;
1612         std::vector<double>::iterator vecXoi;
1613         std::vector<double>::iterator vecYoi;
1614         std::vector<double> vecZ;
1615
1616         std::vector<double> vecCtrlPointX;
1617         std::vector<double> vecCtrlPointY;
1618         std::vector<double> vecCtrlPointZ;
1619
1620
1621         double *p;
1622         double xAct=0;
1623         double yAct=0;
1624         int ii,size=polyDataResult->GetNumberOfPoints();
1625         ofstream myfile;
1626         myfile.open ("C:/Creatis/example2.txt");
1627
1628         size=polyDataResult->GetNumberOfPoints();
1629         for (ii=0;ii<size;ii++)
1630         {
1631                 if(ii==0)
1632                 {
1633                         xAct=x;
1634                         yAct=y;
1635                 }
1636                 p       = polyDataResult->GetPoint(ii);
1637                 double x=p[0];
1638                 double y=p[1];
1639                 /*if(fabs(yAct-y)>20)
1640                 {
1641                         if((xAct-x)>1 || (xAct-x)<-1)
1642                         {
1643                         vecX.push_back( p[0] );
1644                         vecY.push_back( p[1] );
1645                         myfile <<p[0]<<","<<p[1]<<"\n";
1646                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1647                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1648                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1649                         vecZ.push_back( 900 );
1650                         xAct=x;
1651                         yAct=y;
1652                         }
1653                         else
1654                         {
1655                                 vecXo.push_back(p[0]);
1656                                 vecYo.push_back(p[1]);
1657                         }
1658
1659                 }
1660                 else*/ if(fabs(xAct-x)>11)
1661                 {
1662                         vecXo.push_back(p[0]);
1663                         vecYo.push_back(p[1]);
1664                 }
1665                 else
1666                 {
1667                 vecX.push_back( p[0] );
1668                 myfile <<p[0]<<","<<p[1]<<"\n";
1669                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1670                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1671                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1672                 vecY.push_back( p[1] );
1673                 vecZ.push_back( 900 );
1674                 xAct=x;
1675                 yAct=y;
1676                 }
1677
1678
1679         }
1680
1681         while(!vecXo.empty())
1682         {
1683                 vecX.push_back(vecXo.back());
1684                 //std::cout<<" x Siguiente "<<vecXo.back();
1685                 vecXo.pop_back();
1686                 vecZ.push_back( 900 );
1687         }
1688         while(!vecYo.empty())
1689         {
1690                 vecY.push_back(vecYo.back());
1691                         vecYo.pop_back();
1692         }
1693         myfile.close();
1694
1695         /*for(int l=0;l<vecX.size();l++)
1696         {
1697                 if(l==0)
1698                 {
1699             vecXo.push_back(p[0]);
1700                         vecYo.push_back(p[1]);
1701                 }
1702                 else
1703                 {
1704                         if(vecXoi[l-1]==)
1705                         {
1706                         }
1707                 }
1708
1709         }*/
1710
1711         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1712
1713         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1714
1715         int method=2;
1716         if (method==0){
1717                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1718         }
1719         else if (method==1){
1720                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1721         }
1722         else if (method==2){
1723                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1724                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1725         }
1726         //--Adding contour to the system
1727
1728         std::vector<int> actualInstantVector;
1729         _instantPanel->getInstant( actualInstantVector );
1730         actualInstantVector[1]=z;
1731
1732         int j,sizeCtrPt = vecCtrlPointX.size();
1733
1734         manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1735         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1736         if (sizeCtrPt>=3){
1737                 for (j=0 ; j<sizeCtrPt ; j++)
1738                 {
1739                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1740                 } // for
1741                 std::string theName;
1742                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1743                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1744                 bool addedModel = theName.compare("") != 0;
1745                 if( addedModel )
1746                 {
1747                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1748                         _theViewPanel->getSpacing(spc);
1749                         //Adding the manualContourControler to interface objects structure
1750                         //Adding the manualViewContour to interface objects structure
1751                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1752                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1753                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1754                 }       // if addedModel
1755         } // if sizeCtrPt
1756
1757
1758
1759                  WriterType::Pointer writer = WriterType::New();
1760          CastFilterType3::Pointer caster = CastFilterType3::New();
1761
1762                  caster->SetInput( gradientMagnitude->GetOutput() );
1763                  writer->SetInput( caster->GetOutput() );
1764                  writer->SetFileName("Gradient Magnitude.png");
1765                  caster->SetOutputMinimum(   0 );
1766                  caster->SetOutputMaximum( 255 );
1767                  writer->Update();
1768
1769                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1770                  WriterType::Pointer writer2 = WriterType::New();
1771
1772                  caster2->SetInput( sigmoid->GetOutput() );
1773                  writer2->SetInput( caster2->GetOutput() );
1774                  writer2->SetFileName("Sigmoid.png");
1775                  caster2->SetOutputMinimum(   0 );
1776                  caster2->SetOutputMaximum( 255 );
1777                  writer2->Update();
1778
1779                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1780                  WriterType::Pointer writer3 = WriterType::New();
1781
1782                  caster3->SetInput( fastMarching->GetOutput() );
1783                  writer3->SetInput( caster3->GetOutput() );
1784                  writer3->SetFileName("FastMarching.bmp");
1785                  caster3->SetOutputMinimum(   0 );
1786                  caster3->SetOutputMaximum( 255 );
1787                  writer3->Update();
1788
1789                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1790                  WriterType::Pointer writer4 = WriterType::New();
1791
1792                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1793                  writer4->SetInput( caster4->GetOutput() );
1794                  writer4->SetFileName("GeodesicActiveContour.png");
1795                  caster4->SetOutputMinimum(   0 );
1796                  caster4->SetOutputMaximum( 255 );
1797                  writer4->Update();
1798
1799                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1800                  WriterType::Pointer writer5 = WriterType::New();
1801
1802                  caster5->SetInput( zeroCrossing->GetOutput() );
1803                  writer5->SetInput( caster5->GetOutput() );
1804                  writer5->SetFileName("ZeroCrossing.bmp");
1805                  caster5->SetOutputMinimum(   0 );
1806                  caster5->SetOutputMaximum( 255 );
1807                  writer5->Update();
1808     }
1809   catch( itk::ExceptionObject & excep )
1810     {
1811     std::cerr << "Exception caught !" << std::endl;
1812     std::cerr << excep << std::endl;
1813     }
1814 }
1815
1816 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1817
1818         //JCP 20-10-08 Undo redo implementation
1819         saveState();
1820         //JCP 20-10-08 Undo redo implementation
1821
1822         wxBusyCursor wait;
1823         int                                     x                                       = _theViewPanel->GetX();
1824         int                                     y                                       = _theViewPanel->GetY();
1825         int                                     z                                       = _theViewPanel->GetZ();
1826         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1827         RefreshInterface();
1828 }
1829
1830
1831 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1832 {
1833         int typeofcontour = 1;
1834         //--Extracting Contour
1835         //vtkImageData  *imagedata      = _theViewPanel->getSceneManager()->GetImageData();
1836         vtkImageData    *imagedata      = getImageData();
1837 //              double                  *range          = imagedata->GetScalarRange();
1838 //              double                  thr                     = 1;
1839
1840         vtkImageReslice *imageReslice = vtkImageReslice::New();
1841 //EED
1842 //              double spc[3];
1843 //              imagedata->GetSpacing(spc);
1844 //              x = x*spc[0];
1845 //              y = y*spc[1];
1846 //              z = z*spc[3];
1847
1848         imageReslice->SetInput( imagedata );
1849         imageReslice->SetInformationInput(imagedata);
1850         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1851         imageReslice->SetResliceAxesOrigin(0,0,z);
1852         imageReslice->SetOutputDimensionality(2);
1853         imageReslice->SetInterpolationModeToLinear();
1854
1855         imagedata = imageReslice->GetOutput();
1856         imagedata->Update();
1857         imagedata->UpdateInformation();
1858
1859         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1860         cntVTK->SetInput( imagedata );
1861
1862         cntVTK->SetNumberOfContours( 1 );
1863         //cntVTK->SetValue( 0, vmin );
1864 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1865         cntVTK->SetValue( 1, isovalue );
1866 //      cntVTK->SetValue( 1, vmax );
1867         cntVTK->Update( );
1868         cntVTK->UpdateInformation();
1869
1870         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1871         cpd->SetInput( cntVTK->GetOutput( ) );
1872         cpd->ConvertLinesToPointsOff( );
1873         cpd->Update( );
1874         cpd->UpdateInformation();
1875
1876         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1877         conn->SetExtractionModeToClosestPointRegion( );
1878         //conn->SetMaxRecursionDepth( 3000 );
1879
1880         conn->SetInput( cpd->GetOutput( ) );
1881
1882         conn->SetClosestPoint( x, y, 0 );
1883         conn->Update( );
1884         conn->UpdateInformation();
1885
1886         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1887         cpd2->SetInput( conn->GetOutput( ) );
1888         cpd2->Update();
1889         cpd2->UpdateInformation();
1890
1891         vtkStripper* vtkstripper = vtkStripper::New( );
1892         vtkstripper->SetInput( cpd2->GetOutput() );
1893         vtkstripper->Update();
1894         vtkstripper->UpdateInformation();
1895
1896
1897         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1898
1899         polyDataResult->Update( );
1900         polyDataResult->UpdateInformation();
1901
1902 /* EED
1903 ofstream myfile;
1904 myfile.open ("c:/temp/example.txt");
1905 myfile << "\n";
1906 polyDataResult->Print(myfile);
1907 myfile << "-------------------------------------\n";
1908 polyDataResult->GetLines()->Print(myfile);
1909 myfile.close();
1910 */
1911
1912         cntVTK          -> Delete();
1913         cpd2            -> Delete();
1914         cpd                     -> Delete();
1915         conn            -> Delete();
1916
1917
1918 //--Calculating control points
1919
1920         std::vector<double> vecX;
1921         std::vector<double> vecY;
1922         std::vector<double> vecZ;
1923
1924         std::vector<double> vecCtrlPointX;
1925         std::vector<double> vecCtrlPointY;
1926         std::vector<double> vecCtrlPointZ;
1927
1928
1929         double *p;
1930         int ii,size=polyDataResult->GetNumberOfPoints();
1931         int id;
1932         for (ii=1;ii<=size;ii++)
1933         {
1934                 id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1935                 p       = polyDataResult->GetPoint(id);
1936 //              double x=p[0];
1937 //              double y=p[1];
1938                 vecX.push_back( p[0] );
1939                 vecY.push_back( p[1] );
1940                 vecZ.push_back( 900 );
1941 //                      vecZ.push_back( p[2] );
1942         }
1943
1944
1945         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1946         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1947
1948 //PROOFS
1949         /*if (methodRadiobox->GetSelection()==0){
1950                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1951         }
1952         if (methodRadiobox->GetSelection()==1){
1953                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1954         }
1955         if (methodRadiobox->GetSelection()==2){
1956                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1957                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1958         }*/
1959
1960         if (method==0){
1961                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1962         }
1963         else if (method==1){
1964                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1965         }
1966         else if (method==2){
1967                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1968                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1969         }
1970
1971         //--Adding contour to the system
1972
1973         std::vector<int> actualInstantVector;
1974         _instantPanel->getInstant( actualInstantVector );
1975         actualInstantVector[1]=z;
1976
1977         int j,sizeCtrPt = vecCtrlPointX.size();
1978         manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1979         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1980         if (sizeCtrPt>=3){
1981                 for (j=0 ; j<sizeCtrPt ; j++)
1982                 {
1983                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1984                 } // for
1985                 std::string theName;
1986                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1987                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1988                 bool addedModel = theName.compare("") != 0;
1989                 if( addedModel )
1990                 {
1991                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1992                         _theViewPanel->getSpacing(spc);
1993                         //Adding the manualContourControler to interface objects structure
1994                         //Adding the manualViewContour to interface objects structure
1995                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1996                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1997                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1998                 }       // if addedModel
1999         } // if sizeCtrPt
2000 }
2001 int wxContourMainFrame::GetImageDataSizeZ(){
2002         return _theViewPanel->GetImageDataSizeZ();
2003 }
2004
2005 void wxContourMainFrame::GetImageDataRange(double *range){
2006         _theViewPanel->GetImageDataRange(range);
2007 }
2008
2009 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
2010         //JCP 20-10-08 Undo redo implementation
2011         saveState();
2012         //JCP 20-10-08 Undo redo implementation
2013
2014         wxBusyCursor wait;
2015         int                                     x                                       = _theViewPanel->GetX();
2016         int                                     y                                       = _theViewPanel->GetY();
2017         int z;
2018         double porcent;
2019         wxString tmpString;
2020         double totalZ = maxZ-minZ+1;
2021         for( z=minZ ; z<=maxZ ; z++ )
2022         {
2023                 porcent = 100.0* (z-minZ)/totalZ;
2024                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2025                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2026                 //_staticTextSegmentation->SetLabel(tmpString);
2027                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2028         }
2029         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
2030         RefreshInterface();
2031 }
2032
2033
2034 //Creates a reference line to be used as the axis of the mirroring
2035 void wxContourMainFrame::referenceLine()
2036 {
2037         if (_refLineControl==NULL)
2038         {
2039                 wxBusyCursor wait;
2040                 double spc[3];
2041
2042                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2043                 vtkimagedata->GetSpacing(spc);
2044
2045                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2046
2047                 _refLineControl = new manualLineControler();
2048                 _refLineModel   = new manualContourModelLine();
2049                 _refLineView = new manualViewLine();
2050                 _refLineView->SetModel( _refLineModel );
2051                 _refLineView->SetWxVtkBaseView( viewer2D );
2052                 _refLineView->SetRange( 2 );
2053                 _refLineView->SetZ( 1200 );
2054
2055                 _refLineView->SetSpacing(spc);
2056
2057                 _refLineView->SetColorNormalContour(0, 0, 1);
2058                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2059                 _refLineView->SetWidthLine(4);
2060
2061                 _refLineControl->SetModelView( _refLineModel , _refLineView );
2062                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2063                 style->AddInteractorStyleMaracas( _refLineControl );
2064                 _refLineModel->SetCloseContour(false);
2065                 _refLineControl->CreateNewManualContour();
2066
2067 //AD: Inicializar el mirroring con una linea ya pintada
2068         /*
2069                 double z = _refLineControl->GetZ();
2070
2071                 int imageDim[3];
2072                 image->GetDimensions(imageDim);
2073                 double x = (double) imageDim[0]/2;
2074                 double y1 = (double) (imageDim[1]/2)+15;
2075                 double y2 = (double) (imageDim[1]/2)-15;
2076
2077                 _refLineControl->AddPoint(x,y1,z);
2078                 _refLineControl->AddPoint(x,y2,z);
2079                 _refLineControl->SetCompleteCreation(true);
2080
2081                 _refLineModel->AddPoint(x,y1,z);
2082                 _refLineModel->AddPoint(x,y2,z);
2083                 _refLineModel->UpdateSpline();
2084
2085                 _refLineView->UpdateViewPoint(0);
2086                 _refLineView->UpdateViewPoint(1);
2087         */
2088
2089                 _refLineControl->SetActive(true);
2090                 _refLineView->RefreshContour();
2091         }
2092 }
2093
2094 //Hides the referenceLine
2095 void wxContourMainFrame::refLineHide()
2096 {
2097         if (_refLineControl!=NULL)
2098         {
2099                 if (_refLineControl->GetActive())
2100                 {
2101                         _refLineView->RemoveCompleteContourActor();
2102                         _refLineControl->SetEditable(false);
2103                         _refLineControl->SetActive(false);
2104
2105                         RefreshInterface();
2106                 }
2107         }
2108 }
2109
2110 //Shows the referenceLine
2111 void wxContourMainFrame::refLineShow()
2112 {
2113         if (_refLineControl!=NULL)
2114         {
2115                 if (_refLineControl->GetActive()==false)
2116                 {
2117                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2118
2119                         _refLineView->SetModel( _refLineModel );
2120                         _refLineView->SetWxVtkBaseView( viewer2D );
2121                         _refLineView->SetRange( 2 );
2122                         _refLineView->SetZ( 1200 );
2123
2124                         _refLineControl->SetModelView( _refLineModel , _refLineView );
2125                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2126                         style->AddInteractorStyleMaracas( _refLineControl );
2127                         _refLineControl->CreateNewManualContour();
2128                         _refLineControl->SetActive(true);
2129                         _refLineView->RefreshContour();
2130
2131                         RefreshInterface();
2132                 }
2133         }
2134 }
2135
2136 void wxContourMainFrame::refLineChangeWidth(int width)
2137 {
2138         _refLineView->SetWidthLine(width);
2139         _refLineView->RefreshContour();
2140
2141         RefreshInterface();
2142 }
2143
2144
2145 void wxContourMainFrame::onMirror()
2146 {
2147         //AD:02-09
2148         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2149         std::vector<std::string> filterCurrentSelection;
2150
2151         std::vector<int> tempVector;
2152         _instantPanel->getInstant( tempVector );
2153     _performingOperation->reset();
2154         _performingOperation->setStartCommand( COPY );
2155         _performingOperation->setStartOperationInstantVector( tempVector );
2156         _performingOperation->setKeyNamesOperationElems( currentSelection );
2157
2158         char theStartCommand = _performingOperation->getStartCommand();
2159         if (  theStartCommand == COPY )
2160         {
2161                 //JCP 20-10-08 Undo redo implementation
2162                 saveState();
2163                 //JCP 20-10-08 Undo redo implementation
2164                 std::vector<int> tempVector;
2165                 _instantPanel->getInstant( tempVector );
2166                 _performingOperation->setEndOperationInstantVector ( tempVector );
2167                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2168                 int i,size = elems.size();
2169                 for( i=0; i<size; i++ )
2170                 {
2171                         createMirrorContourOf( elems[i], tempVector, i>0 );
2172                 }
2173         }
2174
2175         //deleteContour( _refName );
2176         //_refName = "";
2177 }
2178
2179
2180 void wxContourMainFrame::showAxis(bool show)
2181 {
2182         _theViewPanel->SetVisibleAxis(show);
2183         _theViewPanel->Refresh();
2184 }
2185
2186
2187 void wxContourMainFrame::onRigidPressed(){
2188         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2189         int elementsSelected = currentSelection.size();
2190
2191         if ( elementsSelected >= 1 ){
2192                 //JCP 20-10-08 Undo redo implementation
2193                 saveState();
2194                 //JCP 20-10-08 Undo redo implementation
2195
2196                 std::vector<int> tempVector;
2197                 _instantPanel->getInstant( tempVector );
2198                 Instant instant(&tempVector);
2199
2200                 int i , size=currentSelection.size();
2201                 for ( i=0 ; i<size ; i++ )
2202                 {
2203                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2204                 } // i
2205         }
2206 }
2207
2208 void wxContourMainFrame::onWidthOfContour(double width){
2209
2210         _theViewPanel->removeSceneContours();
2211         _theViewPanel->SetWidthContour(width);
2212
2213         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2214
2215         RefreshInterface();
2216 }
2217
2218 int wxContourMainFrame::getColorWindow()
2219 {
2220         /*
2221         double range[2];
2222         vtkImageData * img = getImageData();
2223         img->GetScalarRange(range);
2224
2225         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2226
2227         return (int)range[1];
2228         */
2229         return _theViewPanel->getColorWindow();
2230 }
2231
2232 int wxContourMainFrame::getWindowLevel()
2233 {
2234         /*
2235         double range[2];
2236         vtkImageData * img = getImageData();
2237         img->GetScalarRange(range);
2238
2239         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2240
2241         return (int)range[1];
2242         */
2243         return _theViewPanel->getWindowLevel();
2244 }
2245
2246 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
2247         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2248
2249         RefreshInterface();
2250 }
2251
2252 void wxContourMainFrame::onInterpolation(bool interpolate){
2253         _theViewPanel->onInterpolation(interpolate);
2254         RefreshInterface();
2255 }
2256
2257 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
2258         _instantPanel->setConceptValue( name, actual );
2259 }
2260
2261 void wxContourMainFrame::resetAppend(){
2262         kernelManager->resetAppend();
2263
2264 }
2265
2266 void wxContourMainFrame::onSpreadAdd(){
2267         std::vector<double> vecX;
2268         std::vector<double> vecY;
2269         std::vector<double> vecZ;
2270         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2271
2272         std::vector<int> tempVector;
2273         _instantPanel->getInstant( tempVector );
2274
2275         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2276
2277         interfMainPanel::getInstance()->appendStringSpread(val);
2278
2279 }
2280
2281 void wxContourMainFrame::onSpreadGo(int type){
2282
2283         //JCP 20-10-08 Undo redo implementation
2284         saveState();
2285         //JCP 20-10-08 Undo redo implementation
2286
2287         wxBusyCursor wait;
2288         std::vector<double> vecCtrlPointX;
2289         std::vector<double> vecCtrlPointY;
2290         std::vector<double> vecCtrlPointZ;
2291         double  minZ,maxZ;
2292         int z;
2293
2294         std::vector<int> tempVector;
2295         _instantPanel->getInstant( tempVector );
2296 //              tempVector[1];
2297
2298         kernelManager->getMaxMinZ(&minZ,&maxZ);
2299 //JSTG_16-07-08_----------------------------------------------------------------
2300         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2301         kernelManager->CalculeSplinePropagation();
2302
2303         double          totalZ = maxZ-minZ+1;
2304         double          porcent;
2305         wxString        tmpString;
2306 //--------------------------------------------------------------------
2307         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2308         {
2309                 porcent = 100.0* (z-minZ)/totalZ;
2310                 int numero = (int)(z-minZ+1)/(int)totalZ;
2311                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2312
2313                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2314
2315                 int typeofcontour = 1;
2316                 std::string theName;
2317                 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2318
2319                 if( manModelContour!=NULL ){
2320                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2321                         this->_theViewPanel->getSpacing(spc);
2322                         //Adding the manualContourControler to interface objects structure
2323                         //Adding the manualViewContour to interface objects structure
2324                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2325                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2326                 } // if addedModel
2327         }
2328         if(z > maxZ){
2329                 porcent = 100.0;
2330                 int numero = (int)(z-minZ+1)/(int)totalZ;
2331                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2332
2333                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2334         }// for z
2335         //RefreshInterface();
2336 }
2337
2338 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2339
2340 }
2341
2342 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2343         std::vector<int> tempVector;
2344         _instantPanel->getInstant(tempVector);
2345         //Asignation of slide number should be different ex by name
2346         tempVector[1]=slide;
2347         return kernelManager->getOutlinesNameAtInstant(tempVector);
2348 }
2349
2350
2351 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2352 {
2353         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2354 }
2355
2356
2357 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2358 {
2359 //EED01Juillet2009      GenerateContourExtractData();
2360
2361         wxString tempString;
2362         int maxContourGroup     =       0;
2363
2364         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2365
2366         std::vector<manualBaseModel*> lstManConMod;
2367         std::vector<manualBaseModel*> lstManConModTmp;
2368         std::vector<manualBaseModel*> lstManConModExp;
2369         std::vector<double> pLstValue;
2370         std::vector<double> pLstValuePosX;
2371         std::vector<double> pLstValuePosY;
2372         std::vector<double> pLstValuePosZ;
2373
2374         int             resultSize;
2375         int             resultGrayRangeCount;
2376         double  resultMin;
2377         double  resultMax;
2378         double  resultAverage;
2379         double  resultStandardeviation;
2380
2381         std::vector<int> tempVector;
2382         _instantPanel->getInstant( tempVector );
2383
2384 //EED01Juillet2009      vtkImageData *imagedata = _theViewPanel->getImageData();
2385 //      int sizeZ = _theViewPanel->GetImageDataSizeZ();
2386         int z;
2387         int ii,sizeLstContourThings;
2388
2389
2390         int minZ,maxZ;
2391         double totalZ;
2392         double porcent;
2393         wxString tmpString;
2394
2395
2396         if (selection==0 ) // actual slice
2397         {
2398                 int actualSlice = tempVector[1];
2399                 minZ    = actualSlice;
2400                 maxZ    = actualSlice;
2401         }       else  {  // slice range
2402                 minZ    = minimumZ;
2403                 maxZ    = maximumZ;
2404         }
2405
2406
2407         totalZ  = maxZ-minZ+1;
2408 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2409
2410         _contourextractdata->InitVolumeStatistics();
2411
2412 // For each slice..
2413         for ( z=minZ ; z<=maxZ ; z++ )
2414         {
2415
2416                 porcent = 100.0* (z-minZ)/totalZ;
2417                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2418
2419                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2420                 //_staticTextInformation->SetLabel(tmpString);
2421
2422                 //Extraction data from contours of each slice
2423                 _contourextractdata->SetZtoBeAnalys(z);
2424
2425                 tempVector[1]=z;
2426                 Instant instant(&tempVector);
2427                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2428                 sizeLstContourThings = lstContourThings.size();
2429
2430                 lstManConMod.clear();
2431                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2432                 {
2433                         ContourThing **contourthing = lstContourThings[ii];
2434                         lstManConMod.push_back( (*contourthing)->getModel() );
2435                 }
2436
2437                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2438
2439                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2440                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2441                 //_grid->SetRowLabelValue(z, tempString );
2442 //EED004
2443                 int iContourGroup,sizeContourGroup;
2444                 if (typeContourGroup==3) // contour separete
2445                 {
2446                         sizeContourGroup=lstManConModExp.size();
2447                         if ( maxContourGroup<sizeContourGroup )
2448                         {
2449                                 maxContourGroup=sizeContourGroup;
2450                         }
2451                 } else {  // contour AND OR XOR
2452                         sizeContourGroup=1;
2453                         maxContourGroup=1;
2454                 }
2455
2456                 int tmpIntA;
2457
2458                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2459                         lstManConModTmp.clear();
2460
2461
2462
2463                         if (typeContourGroup==3) // contour separete
2464                         {
2465                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2466                         } else {  // contour AND OR XOR
2467                                 lstManConModTmp = lstManConModExp;
2468                         }
2469
2470                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2471                         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2472
2473                         pLstValue.clear();
2474                         pLstValuePosX.clear();
2475                         pLstValuePosY.clear();
2476                         pLstValuePosZ.clear();
2477
2478
2479                         int numberOfPixels;
2480                         _contourextractdata->GetValuesInsideCrown(  &numberOfPixels,
2481                                                                                                                 &pLstValue,
2482                                                                                                                 &pLstValuePosX,
2483                                                                                                                 &pLstValuePosY,
2484                                                                                                                 &pLstValuePosZ);
2485
2486                         resultSize=numberOfPixels;
2487                         // Statistics of each slice.
2488                         _contourextractdata->Statistics( &pLstValue,
2489                                                                                         grayRangeMin,
2490                                                                                         grayRangeMax,
2491                                                                                         &resultGrayRangeCount,
2492                                                                                         &resultSize,
2493                                                                                         &resultMin,
2494                                                                                         &resultMax,
2495                                                                                         &resultAverage,
2496                                                                                         &resultStandardeviation);
2497
2498                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2499                         {
2500                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2501                         }
2502
2503                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2504
2505                         tempString.Printf(_T("%d"),numberOfPixels);
2506
2507                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2508
2509                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2510                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2511
2512                         tempString.Printf(_T("%f"),resultMin);
2513                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2514
2515                         tempString.Printf(_T("%f"),resultMax);
2516                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2517
2518                         tempString.Printf(_T("%f"),resultAverage);
2519                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2520
2521                         tempString.Printf(_T("%f"),resultStandardeviation);
2522                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2523
2524
2525                 } // for iContourGroup
2526         } // for z
2527
2528         // Print Volume Statistics
2529
2530
2531         int             vol_rCountRange;
2532         int             vol_rsize;
2533         double  vol_minValue;
2534         double  vol_maxValue;
2535         double  vol_average;
2536         double  vol_standardeviation;
2537
2538         if (selection!=0 ) // actual slice
2539         {
2540
2541                 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2542                                                                                                  &vol_minValue, &vol_maxValue,
2543                                                                                                  &vol_average, &vol_standardeviation);
2544
2545                 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2546
2547                 tempString.Printf(_T("%d"),vol_rsize);
2548                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2549
2550                 tempString.Printf(_T("%d"),vol_rCountRange);
2551                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2552
2553                 tempString.Printf(_T("%f"),vol_minValue);
2554                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2555
2556                 tempString.Printf(_T("%f"),vol_maxValue);
2557                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2558
2559                 tempString.Printf(_T("%f"),vol_average);
2560                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2561
2562                 tempString.Printf(_T("%f"),vol_standardeviation);
2563                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2564         }
2565         //-----------------------------------------
2566
2567         int iTitleGroup;
2568         wxString tmpTitleString;
2569         int tmpIntB;
2570         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2571         {
2572                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2573                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2574                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2575
2576                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2577                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2578                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2579                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2580                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2581                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2582                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2583         }// for title
2584         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2585 }
2586
2587 //AD: 29-05-09
2588 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2589         int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2590 {
2591         if (XYZValues)
2592         {
2593                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2594         }
2595
2596         if (contourImage)
2597         {
2598                 vtkImageData * mask;
2599                 vtkImageData * value;
2600                 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2601                 this->SaveImageResult( directory , namefile, mask, value);
2602         }
2603
2604         if (statistics)
2605         {
2606                 std::ostringstream name;
2607                 name << filename << ".xls";
2608
2609
2610                 FILE *pFile=fopen(name.str().c_str(),"w+");
2611
2612
2613                 wxString tmpString;
2614                 int i,j,maxX;
2615
2616 //              int sizeZ = _theViewPanel->GetImageDataSizeZ();
2617 //              int maxY=sizeZ+2;
2618
2619                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2620
2621                 // -- Title --
2622                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2623                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2624                 {
2625                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2626                                 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2627                 }
2628                 fprintf(pFile,"\n\n" );
2629
2630
2631
2632                 if (selection==0 ) // actual slice
2633                 {
2634                         std::vector<int> tempVector;
2635                         _instantPanel->getInstant( tempVector );
2636                         int actualSlice = tempVector[1];
2637                         minZ    = actualSlice;
2638                         maxZ    = actualSlice;
2639                 }
2640
2641                 // Stadistics...
2642                 for ( j=minZ; j<=maxZ ; j++)
2643                 {
2644                         fprintf(pFile,"%d\t" , j );
2645                         for (i=0 ; i<maxX ; i++){
2646                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2647                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2648                         } // for i
2649                         fprintf(pFile,"\n"  );
2650                 } // for j
2651
2652
2653                 // Total of stadistics.....
2654                 if (selection!=0)
2655                 {
2656                         fprintf(pFile,"\n Total:\t"  );
2657                         for (i=0 ; i<maxX ; i++){
2658                                 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2659                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2660                         } // for i
2661                         fprintf(pFile,"\n"  );
2662                 }
2663
2664                 fclose(pFile);
2665         }
2666 }
2667
2668 //AD: 29-05-09
2669 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2670 {
2671         wxBusyCursor wait;
2672 //EED01Juillet2009      GenerateContourExtractData();
2673
2674         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2675         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2676
2677         std::vector<manualBaseModel*> lstManConMod;
2678         std::vector<manualBaseModel*> lstManConModTmp;
2679         std::vector<manualBaseModel*> lstManConModExp;
2680         std::vector<double> pLstValue;
2681         std::vector<double> pLstValuePosX;
2682         std::vector<double> pLstValuePosY;
2683         std::vector<double> pLstValuePosZ;
2684
2685         std::vector<int> tempVector;
2686         _instantPanel->getInstant( tempVector );
2687
2688 //EED01Juillet2009      vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2689         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2690         int z;
2691         int ii,sizeLstContourThings;
2692
2693
2694         int minZ,maxZ;
2695         double totalZ;
2696         double porcent;
2697         wxString tmpString;
2698         minZ    = 0;// _mbarrange->GetStart();
2699         maxZ    = sizeZ;//_mbarrange->GetEnd();
2700         totalZ  = maxZ-minZ+1;
2701
2702 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2703
2704 // For each slice..
2705         for ( z=0 ; z<sizeZ ; z++)
2706         {
2707
2708                 porcent = 100.0* (z-minZ)/totalZ;
2709
2710                 tmpString.Printf(_T("Saving Values"));
2711                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2712                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2713                 //_staticTextInformation->SetLabel(tmpString);
2714
2715
2716                 //Extraction data from contours of each slice
2717                 _contourextractdata->SetZtoBeAnalys( z);
2718
2719                 tempVector[1]=z;
2720                 Instant instant(&tempVector);
2721                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2722                 sizeLstContourThings = lstContourThings.size();
2723
2724                 lstManConMod.clear();
2725                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2726                 {
2727                         ContourThing **contourthing = lstContourThings[ii];
2728                         lstManConMod.push_back( (*contourthing)->getModel() );
2729                 }
2730                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2731
2732
2733 //EED004
2734
2735                 int iContourGroup,sizeContourGroup;
2736                 if (typeContourGroup==3) // contour separete
2737                 {
2738                         sizeContourGroup=lstManConModExp.size();
2739                 } else {  // contour AND OR XOR
2740                         sizeContourGroup=1;
2741                 }
2742
2743                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2744                         lstManConModTmp.clear();
2745                         if (typeContourGroup==3) // contour separete
2746                         {
2747                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2748                         } else {  // contour AND OR XOR
2749                                 lstManConModTmp = lstManConModExp;
2750                         }
2751
2752                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2753
2754                         pLstValue.clear();
2755                         pLstValuePosX.clear();
2756                         pLstValuePosY.clear();
2757                         pLstValuePosZ.clear();
2758                         int numberOfPixels;
2759                         _contourextractdata->GetValuesInsideCrown(      &numberOfPixels,
2760                                                                                                                 &pLstValue,
2761                                                                                                                 &pLstValuePosX,
2762                                                                                                                 &pLstValuePosY,
2763                                                                                                                 &pLstValuePosZ);
2764
2765                         std::string temp = directory + "/" + namefile + "-slice";
2766                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2767                         temp = temp + ".txt";
2768
2769                         // LG 14/01/09 : using crea
2770                         wxString filename = crea::std2wx(temp);
2771                         /*filename.Printf(_T("%s"),directory.c_str());
2772                         filename.append(_T("\\"));
2773                         filename.append(_T("%s"),namefile.c_str());
2774                         filename.append(_T("-slice"));
2775                         filename.append(_T("%d"),z);
2776                         filename.append(_T("-cont"));
2777                         filename.append(_T("%d"),iContourGroup);
2778                         filename.append(_T(".txt"));*/
2779                         //                      filename.Printf(temp.c_str());
2780
2781
2782
2783                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2784                         fprintf(pFile,"value \t x \t y \t z\n"  );
2785                         int iLstValue,sizeLstValue=pLstValue.size();
2786                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2787                         {
2788                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2789                         }
2790                         fclose(pFile);
2791                 } // for  iContourGroup
2792         } // for z
2793         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2794         //_staticTextInformation->SetLabel( _T("") );
2795
2796 }
2797
2798 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2799         wxBusyCursor wait;
2800 //EED01Juillet2009      GenerateContourExtractData();
2801
2802         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2803         if (typeContourGroup==3)
2804         {
2805                 typeContourGroup=1;
2806         }
2807         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2808
2809         std::vector<manualBaseModel*> lstManConMod;
2810         std::vector<manualBaseModel*> lstManConModTmp;
2811         std::vector<manualBaseModel*> lstManConModExp;
2812
2813         std::vector<int> tempVector;
2814         _instantPanel->getInstant( tempVector );
2815
2816     vtkImageData *imagedata = _theViewPanel->getImageData();
2817         int ext[6];
2818         imagedata->GetExtent(ext);
2819         int sizeZimage = ext[5]-ext[4]+1;
2820         int z;
2821         int ii,sizeLstContourThings;
2822
2823
2824         double totalZ;
2825         double porcent;
2826
2827         wxString tmpString;
2828
2829
2830         if (selection==0 ) // actual slice
2831         {
2832                 int actualSlice = tempVector[1];
2833                 minZ    = actualSlice;
2834                 maxZ    = actualSlice;
2835         }
2836
2837         totalZ  = maxZ-minZ;
2838
2839 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2840
2841         // cleanning image before range
2842         for (z=0; z<minZ; z++){
2843                 _contourextractdata->ResetImageResult(z);
2844         }
2845         // cleanning image after range
2846         for (z=maxZ+1; z<sizeZimage; z++){
2847                 _contourextractdata->ResetImageResult(z);
2848         }
2849
2850
2851 // For each slice..
2852         for ( z=minZ ; z<=maxZ ; z++)
2853         {
2854
2855                 porcent = 100.0* (z-minZ)/totalZ;
2856                 tmpString.Printf(_T("Saving Values"));
2857                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2858                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2859
2860                 //Extraction data from contours of each slice
2861                 _contourextractdata->SetZtoBeAnalys( z);
2862
2863                 tempVector[1]=z;
2864                 Instant instant(&tempVector);
2865                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2866                 sizeLstContourThings = lstContourThings.size();
2867
2868                 lstManConMod.clear();
2869                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2870                 {
2871                         ContourThing **contourthing = lstContourThings[ii];
2872                         lstManConMod.push_back( (*contourthing)->getModel() );
2873                 }
2874                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2875
2876
2877                 int iContourGroup,sizeContourGroup;
2878                 if (typeContourGroup==3) // contour separete
2879                 {
2880                         sizeContourGroup=lstManConModExp.size();
2881                 } else {  // contour AND OR XOR
2882                         sizeContourGroup=1;
2883                 }
2884
2885                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2886                         lstManConModTmp.clear();
2887                         if (typeContourGroup==3) // contour separete
2888                         {
2889                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2890                         } else {  // contour AND OR XOR
2891                                 lstManConModTmp = lstManConModExp;
2892                         }
2893
2894                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2895                         _contourextractdata->CalculateImageResult(); // with actual Z
2896
2897                 } // for  iContourGroup
2898         } // for z
2899
2900         (*value) = _contourextractdata->GetVtkImageValueResult();
2901         (*mask)  = _contourextractdata->GetVtkImageMaskResult();
2902
2903 }
2904
2905 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2906 {
2907
2908         std::string temp = directory + "/" + namefile + "-Value.mhd";
2909
2910         wxString filename = crea::std2wx(temp);
2911         // LG
2912         //      filename.Printf(_T(temp.c_str()));
2913         //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2914         /*filename.Printf(_T("%s"),directory.c_str());
2915         filename.append(_T("\\"));
2916         filename.append(_T("%s"),namefile.c_str());
2917         filename.append(_T("-Value.mhd"));*/
2918
2919 // Image Value
2920         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2921         writerValueImage->SetInput( value );
2922         writerValueImage->SetInput( value );
2923         writerValueImage->SetFileName( (const char *)filename.mb_str() );
2924         writerValueImage->SetFileDimensionality( 3 );
2925         writerValueImage->SetCompression(false);
2926         writerValueImage->Write( );
2927
2928 // Image Mask
2929         //              filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2930         temp = directory + "/" + namefile + "-Mask.mhd";
2931
2932         // LG 14/01/09 : using crea
2933         filename = crea::std2wx(temp);
2934         //      filename.Printf(_T(temp.c_str()));
2935
2936         /*filename.Printf(_T("%s"),directory.c_str());
2937         filename.append(_T("\\"));
2938         filename.append(_T("%s"),namefile.c_str());
2939         filename.append(_T("-Mask.mhd"));*/
2940
2941         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2942         writerMaskImage->SetInput( mask );
2943         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2944         writerMaskImage->SetFileDimensionality( 3 );
2945         writerValueImage->SetCompression(false);
2946         writerMaskImage->Write( );
2947
2948         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2949
2950 }
2951
2952
2953
2954 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2955         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2956                 _theViewPanel->setActualVertical( value);
2957         }
2958         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
2959                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2960         }
2961
2962         changeInstant();
2963 }
2964
2965 void wxContourMainFrame::onSnakePressed(){
2966         std::vector<double> vecX;
2967         std::vector<double> vecY;
2968         std::vector<double> vecZ;
2969         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2970
2971         if (vecX.size()!=0){
2972                 std::vector<int> tempVector;
2973                 _instantPanel->getInstant( tempVector );
2974                 int i,size=vecZ.size();
2975                 int actualSlice = tempVector[1];
2976                 for ( i=0 ; i<size ; i++ )
2977                 {
2978                         vecZ[i] = actualSlice;
2979                 } // for
2980
2981                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2982                 wxPanel* panel = new wxPanel(dialog,-1);
2983                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2984          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2985                 dialog->ShowModal();
2986         } // if
2987
2988 }
2989
2990 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2991         std::string filename = kernelManager->getCurrentFileName();
2992         if(filename.compare("")!=0){
2993                 saveFileWithContours(filename);
2994         }else{
2995                 onSave();
2996         }
2997 }
2998 void wxContourMainFrame::ShowToolsPanel(bool show){
2999         _pannew->Show(show);
3000 }
3001
3002
3003
3004 void wxContourMainFrame::SetContourGroup(int contourGroup)
3005 {
3006         _contourGroup = contourGroup;
3007 }
3008
3009
3010 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3011 {
3012
3013         if      (_viewMaskImagePanel==NULL)
3014         {
3015                 _contourextractdata = new ContourExtractData(true);
3016                 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3017
3018 //              double range[2];
3019 //              _theViewPanel->getImageData()->GetScalarRange(range);
3020                 //int min = (int)floor (range[0]);
3021                 //int max = (int)ceil (range[1]);
3022                 int min = 254;
3023                 int max = 256;
3024
3025                 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , 0);
3026                 _viewMaskImage = new ThresholdImageView();
3027                 _viewMaskImage->SetImage(_contourextractdata->GetVtkImageMaskResult() );
3028                 _viewMaskImage->SetminMaxValue( min, max);
3029                 _viewMaskImage->SetBaseColor( 0,0,1 );
3030                 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3031                 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3032
3033         }
3034         return _viewMaskImagePanel;
3035 }
3036
3037
3038 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3039 {
3040         if      (_viewColorLayerImagePanel==NULL)
3041         {
3042                 double range[2];
3043                 _theViewPanel->getImageData()->GetScalarRange(range);
3044                 int min = (int)floor (range[0]);
3045                 int max = (int)ceil (range[1]);
3046                 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max , 1);
3047                 _viewColorLayerImage = new ColorLayerImageView();
3048                 _viewColorLayerImage->SetImage( _theViewPanel->getImageData() );
3049                 _viewColorLayerImagePanel->SetColorLayerImageView( _viewColorLayerImage );
3050                 _viewColorLayerImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3051         }
3052         return _viewColorLayerImagePanel;
3053 }
3054
3055
3056 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3057 {
3058         if      (_viewThresholdImagePanel==NULL)
3059         {
3060                 double range[2];
3061                 _theViewPanel->getImageData()->GetScalarRange(range);
3062                 int min = (int)floor (range[0]);
3063                 int max = (int)ceil (range[1]);
3064                 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max , 1);
3065                 _viewThresholdImage = new ThresholdImageView();
3066                 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3067                 _viewThresholdImage->SetminMaxValue( min, max);
3068                 _viewThresholdImage->SetBaseColor( 1,0,0 );
3069                 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3070                 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3071         }
3072         return _viewThresholdImagePanel;
3073 }
3074
3075 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3076 int wxContourMainFrame::getType ()
3077 {
3078         int tipo = 0;
3079         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3080
3081         if(!currentSelection.empty())
3082         {
3083                 std::string cloneName = currentSelection [0];
3084                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3085                 tipo = manualModel-> GetTypeModel();
3086         }
3087         return tipo;
3088 }
3089
3090 double wxContourMainFrame::getContourSizeInPixels()
3091 {
3092         double contourSize = 0;
3093
3094         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();        if(!currentSelection.empty())
3095         if(!currentSelection.empty())
3096         {
3097                 std::string cloneName = currentSelection [0];
3098
3099                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3100                 contourSize = manualModel-> GetPathSize();
3101         }
3102         return contourSize;
3103 }
3104 manualBaseModel * wxContourMainFrame::getContour ()
3105 {
3106         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3107
3108         if(!currentSelection.empty())
3109         {
3110                 std::string cloneName = currentSelection [0];
3111                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3112                 return manualModel;
3113         }
3114         return NULL;
3115 }
3116 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3117 {
3118         std::string labelAscii(label.ToAscii());
3119         int pos = labelAscii.find(" ");
3120
3121         int j;
3122
3123         for (j=0 ; pos != string::npos;j++)
3124         {
3125                 labelAscii.replace( pos, 1, "_" );
3126                 pos= labelAscii.find(" ");
3127         }
3128
3129         manualModel -> SetLabel(labelAscii);
3130 }
3131 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3132 {
3133         double sizeInPixel = manualModel ->GetPathSize();
3134         double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3135         double realContourSize = sizeInPixel*onePixelRealSize;
3136         manualModel ->SetRealSize(realContourSize);
3137 }
3138
3139 double wxContourMainFrame::onePixelSize( double value)
3140 {
3141         return _onePixelSize = value;
3142 }
3143
3144 std::string wxContourMainFrame::GetFileLocation()
3145 {
3146         return _fileLocation;
3147 }
3148
3149 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3150 {
3151         _fileLocation = newFileLocation;
3152         std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3153 }
3154 //------------------------------------------------------------------------------------------------------------