lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 //----------------------------------------------------------------------------------------------------------------
   2 // Class definition include
   3 //----------------------------------------------------------------------------------------------------------------
   4 #include "wxContourMainFrame.h"
   5
   6
   7
   8 //----------------------------------------------------------------------------------------------------------------
   9 // Includes
  10 //----------------------------------------------------------------------------------------------------------------
  11
  12
  13 #include "NameWrapper.h"
  14 #include "wx/artprov.h"
  15 #include "ConceptDataWrap.h"
  16 #include <creaWx.h>
  17
  18 #include <string>
  19 using namespace std;
  20
  21 //----------------------------------------------------------------------------------------------------------------
  22 // Class implementation
  23 //----------------------------------------------------------------------------------------------------------------
  24 /** @file wxContourMainFrame.cxx */
  25
  26         //------------------------------------------------------------------------------------------------------------
  27         // Constructors & Destructors
  28         //------------------------------------------------------------------------------------------------------------
  29
  30 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
  31 char wxContourMainFrame::COPY = 'C';
  32
  33         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  34                 //: wxPanel(parent, id, title, pos, size, style)
  35                 //: wxWindow(parent, id, pos, size, style)
  36                 : wxPanel(parent, id, pos, size, style)
  37         {
  38                 m_mgr.SetManagedWindow(this);
  39                 _contourGroup                           = 1;
  40                 _creatingContoursActive         = false;
  41                 _theViewPanel                           = NULL;
  42 //              _modelManager                           = NULL;
  43                 _instantPanel                           = NULL;
  44 //              _buttonsBar                                     = NULL;
  45 //              _gridPanel                                      = NULL;
  46 //              _drawToolsPanel                         = NULL;
  47 //              _operationsToolsPanel           = NULL;
  48                 //_autoFormsPanel                               = NULL;
  49 //              _standardToolsPanel                     = NULL;
  50 //              _editionToolsPanel                      = NULL;
  51 //              _listViewPanel                          = NULL;
  52 //              _sceneManager                           = NULL;
  53                 //_actualInstant                                = NULL;
  54                 _numberOfVariablesStatistics = 6+1;
  55
  56                 _refLineControl                         = NULL;
  57                 _refLineModel                           = NULL;
  58                 _refLineView                            = NULL;
  59 //              _actorPresent                           = false;
  60
  61                 // set up default notebook style
  62 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  63 //              m_notebook_theme = 0;
  64                 //wxContour_ActionCommandsID a;
  65
  66                 _contourextractdata                     = NULL;
  67                 _viewMaskImage                          = NULL;
  68                 _viewMaskImagePanel                     = NULL;
  69                 _viewThresholdImage                     = NULL;
  70                 _viewThresholdImagePanel        = NULL;
  71                 _viewColorLayerImage            = NULL;
  72                 _viewColorLayerImagePanel       = NULL;
  73         }
  74
  75         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
  76                 : wxPanel(parent, id, pos, size, style)
  77         {
  78                 m_mgr.SetManagedWindow(this);
  79                 _contourGroup                           = 1;
  80                 _creatingContoursActive         = false;
  81                 _theViewPanel                           = NULL;
  82
  83                 _instantPanel                           = NULL;
  84                 _refLineControl                         = NULL;
  85                 _refLineModel                           = NULL;
  86                 _refLineView                            = NULL;
  87 //              _actorPresent                           = false;
  88                 _viewMaskImage                          = NULL;
  89                 _viewMaskImagePanel                     = NULL;
  90                 _viewThresholdImage                     = NULL;
  91                 _viewThresholdImagePanel        = NULL;
  92                 _viewColorLayerImage            = NULL;
  93                 _viewColorLayerImagePanel       = NULL;
  94
  95                 // set up default notebook style
  96                 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  97                 m_notebook_theme = 0;
  98                 //wxContour_ActionCommandsID a;
  99                 _numberOfVariablesStatistics = 7;
 100
 101                 _datadir = datadir;
 102
 103
 104                 inredo = 0;
 105                 inundo = 0;
 106
 107                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
 108                 _performingOperation = new PerformingOperation();
 109
 110                 if(images.size() > 0)
 111                 {
 112                         this->setVectImages(images);
 113                 }
 114
 115                 _contourextractdata                     = NULL;
 116 }
 117
 118 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 119 {
 120
 121         _images = imgs;
 122
 123         #if defined(__GNUC__)
 124                 std::string str_home(getenv("HOME"));
 125         #elif defined(_WIN32)
 126                         std::string str_home(getenv("USERPROFILE"));
 127         #endif
 128                 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 129
 130         std::vector<std::string> conceptNameVect;
 131         std::vector<int> conceptSizeVect;
 132
 133         notebook = this->createNotebook();
 134
 135
 136         kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 137
 138
 139         _instantPanel                           = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 140         _theViewPanel                           = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 141
 142 //-------------------------------------------------------------
 143         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 144         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 145
 146
 147         double val = _theViewPanel->getCurrentDeep();
 148         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 149         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 150         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 151         //*******************changeInstant();
 152         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 153
 154         this->configurePanels( );
 155
 156 }
 157
 158
 159         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
 160         {
 161                 if(instance == NULL){
 162                         instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 163                 }
 164                 return instance;
 165         }
 166
 167         std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
 168         {
 169                 return kernelManager->getVectImages();
 170         }
 171
 172         wxContourMainFrame* wxContourMainFrame :: getInstance()
 173         {
 174                 return instance;
 175         }
 176
 177         void wxContourMainFrame :: resetInstance()
 178         {
 179                 instance->Destroy();
 180         }
 181
 182         wxContourMainFrame :: ~wxContourMainFrame()
 183         {
 184                 delete _contourextractdata;
 185                 deleteAllContours();
 186                 _pannew->Close();
 187                 interfMainPanel::resetInstance();
 188                 delete kernelManager;
 189                 instance = NULL;
 190                 //_pannew->Destroy();
 191                 //delete _pannew;
 192
 193                 m_mgr.UnInit();
 194                 //delete m_mgr;
 195
 196                 //El problema al cerrar la aplicacion puede estar asociado
 197                 //a que  wxAUINotebook esta en la aplicacion
 198                 //principal (wxContourGUIExample)tambien
 199                 //EED????               delete _theViewPanel;
 200                 //EED????               delete _instantPanel;
 201                 //EED????               delete _buttonsBar;
 202                 //EED????               delete _actualInstant;
 203                 //EED????               delete _sceneManager;
 204         }
 205
 206
 207         //------------------------------------------------------------------------------------------------------------
 208         // Creational and initialization methods using WxAui
 209         //------------------------------------------------------------------------------------------------------------
 210         //
 211         wxAuiNotebook * wxContourMainFrame :: createNotebook()
 212         {
 213                 wxSize client_size = GetClientSize();
 214                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 215                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 216                 return noteBook;
 217         }
 218
 219
 220         //------------------------------------------------------------------------------------------------------------
 221         // Creational and initialization methods
 222         //------------------------------------------------------------------------------------------------------------
 223         bool wxContourMainFrame :: configurePanels( )
 224         {
 225                 bool configured = _theViewPanel!=NULL;
 226
 227                 configured &= _theViewPanel!=NULL;
 228                 if( _theViewPanel!=NULL )
 229                 {
 230                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 231                         m_mgr.Update();
 232                 }
 233
 234
 235                 if( configured )
 236                 {
 237                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 238                         m_mgr.Update();
 239                 }
 240
 241                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 242                 m_mgr.Update();
 243
 244                 SetMinSize(wxSize(300,300));
 245                 m_mgr.Update();
 246                 return configured;
 247         }
 248
 249
 250         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 251                 {
 252                 bool configured = panel!=NULL;
 253                 configured &= panel!=NULL;
 254
 255                 if( configured )
 256                 {
 257                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 258                         m_mgr.Update();
 259                 }
 260                 return configured;
 261         }
 262
 263         //------------------------------------------------------------------------------------------------------------
 264         //  Attributes getters and setters
 265         //------------------------------------------------------------------------------------------------------------
 266
 267
 268
 269         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 270         {
 271                 _instantPanel = theInstantChooserPanel;
 272         }
 273
 274 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 275 //      {
 276 //              _buttonsBar = theButtonsBar;
 277 //      }
 278
 279 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 280 //      {
 281 //              _gridPanel = theGridPanel;
 282 //      }
 283
 284 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 285 //      {
 286 //              _drawToolsPanel = theDrawToolsPanel;
 287 //      }
 288
 289 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 290 //      {
 291 //              _operationsToolsPanel = theOperationsToolsPanel;
 292 //      }
 293
 294 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 295 //      {
 296 //              _autoFormsPanel = theAutoFormsPanel;
 297 //      }
 298
 299 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 300 //      {
 301 //              _standardToolsPanel= theStandardToolsPanel;
 302 //      }
 303
 304 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 305 //      {
 306 //              _editionToolsPanel =  theEditionToolsPanel;
 307 //      }
 308
 309 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 310 //      {
 311 //              _listViewPanel = theListViewPanel;
 312 //      }
 313
 314
 315
 316 void wxContourMainFrame::onCreateContourSpline( ){
 317
 318         //JCP 20-10-08 Undo redo implementation
 319         saveState();
 320         //JCP 20-10-08 Undo redo implementation
 321         createContour( 1 );
 322
 323 }
 324 void wxContourMainFrame::onCreateContourRectangle( ){
 325     //JCP 20-10-08 Undo redo implementation
 326         saveState();
 327         //JCP 20-10-08 Undo redo implementation
 328         createContour( 2 );
 329 }
 330 void wxContourMainFrame::onCreateContourCircle( ){
 331     //JCP 20-10-08 Undo redo implementation
 332         saveState();
 333         //JCP 20-10-08 Undo redo implementation
 334         createContour( 3 );
 335 }
 336
 337 void wxContourMainFrame::onCreateContourLine( ){
 338     //JCP 20-10-08 Undo redo implementation
 339         saveState();
 340         //JCP 20-10-08 Undo redo implementation
 341         createContour( 6 );
 342 }
 343
 344 // RaC 09-09 --------------------------------------
 345 void wxContourMainFrame::onCreateContourPoints( ){
 346     //JCP 20-10-08 Undo redo implementation
 347         saveState();
 348         //JCP 20-10-08 Undo redo implementation
 349         createContour( 7 );
 350 }
 351 // RaC 09-09 --------------------------------------
 352
 353 // RaC 10-09 --------------------------------------
 354 void wxContourMainFrame::onCreateContourPolygon( ){
 355     //JCP 20-10-08 Undo redo implementation
 356         saveState();
 357         //JCP 20-10-08 Undo redo implementation
 358         createContour( 10 );
 359 }
 360 // RaC 10-09 --------------------------------------
 361
 362 //------------------------------------------------------------------------------------------------------------
 363
 364 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 365 {
 366         //Creating the manualBaseModel and including in the model
 367         manualBaseModel * manModelContour = factoryManualContourModel(panel );
 368
 369         std::vector<int> instantVector;
 370         _instantPanel->getInstant( instantVector );
 371         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 372
 373         /*std::vector<int> instantVector;
 374         _instantPanel->getInstant( instantVector );
 375         std::string theName;
 376         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 377         bool addedModel = theName.compare("") != 0;//??
 378
 379         if( addedModel )
 380         {
 381                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 382                 _theViewPanel->getSpacing(spc);
 383                 //Adding the manualContourControler to interface objects structure
 384                 //Adding the manualViewContour to interface objects structure
 385                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 386                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 387         }
 388 }
 389 void wxContourMainFrame :: createContour( int typeContour )
 390 {
 391         //Creating the manualContourModel and including in the model
 392         manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 393
 394         std::vector<int> instantVector;
 395         _instantPanel->getInstant( instantVector );
 396         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 397
 398         /*std::vector<int> instantVector;
 399         _instantPanel->getInstant( instantVector );
 400         std::string theName;
 401         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 402         bool addedModel = theName.compare("") != 0;//??
 403         if( addedModel )
 404         {
 405                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 406                 _theViewPanel->getSpacing(spc);
 407                 //Adding the manualContourControler to interface objects structure
 408                 //Adding the manualViewContour to interface objects structure
 409                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 410                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 411         }
 412
 413 }
 414 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 415
 416         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 417         manualBaseModel *manModelContour=NULL;
 418         manModelContour = manModelContourBullEye;
 419         if (panel!=NULL){
 420                 int iCrown,sizeCrowns,iSector,sizeSectors;
 421                 double radioA,radioB,ang,angDelta ;
 422                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 423                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 424                 {
 425                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 426                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 427                         if (iCrown==sizeCrowns-1)
 428                         {
 429                                 radioA  = 0;
 430                         } else {
 431                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 432                         }
 433                         radioA=radioA/100.0;
 434                         radioB=radioB/100.0;
 435                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 436                         {
 437                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 438                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 439                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 440                         } // for iSector
 441                 } // for iCrown
 442         } // if _panelBullEyeOptions
 443
 444         return manModelContour;
 445 }
 446 void wxContourMainFrame :: saveState(){
 447
 448         std::string temp = kernelManager->saveState();
 449         saveFileWithContours(temp);
 450 }
 451
 452 void wxContourMainFrame::onDeleteContour(){
 453         //JCP 20-10-08 Undo redo implementation
 454                 saveState();
 455                 //JCP 20-10-08 Undo redo implementation
 456
 457                 std::vector<std::string> lstKeyNameToBeErase;
 458                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 459                 deleteContours( lstKeyNameToBeErase );
 460 /*JCP 19 - 11 - 08
 461                 int i,size=_sceneManager->getSelectedObjects().size();
 462                 for(i=0;i<size;i++)
 463                 {
 464                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 465                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 466                         if ( ispartofstaticlist>=0 )
 467                         {
 468                                 std::vector<int> tempVector;
 469                                 _instantPanel->getInstant( tempVector );
 470                                 Instant instant(&tempVector);
 471                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 472                         }
 473                 }
 474
 475                 std::vector<std::string> lstKeyName;
 476                 std::vector<std::string> lstKeyNameActualSlice;
 477                 std::vector<std::string> lstKeyNameToBeErase;
 478
 479                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 480                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 481                 int k,kSize=lstKeyNameToBeErase.size();
 482                 int j,jSize=lstKeyNameActualSlice.size();
 483                 bool ok;
 484                 for (k=0;k<kSize; k++)
 485                 {
 486                         ok=false;
 487                         for (j=0;j<jSize; j++)
 488                         {
 489                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 490                                 {
 491                                         ok=true;
 492                                 }
 493                         } // for j
 494                         if (ok==true)
 495                         {
 496                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 497                         } // if ok
 498                 } // for k
 499
 500                 deleteContours( lstKeyName );
 501 JCP 19 - 11 - 08*/
 502 }
 503
 504 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 505 {
 506         int i,size=keyNamesVector.size();
 507         for (i=0;i<size;i++)
 508         {
 509                 deleteContour( keyNamesVector[i] );
 510         }
 511 }
 512
 513 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
 514         /*
 515         manualContourModel                      * cModel;
 516         manualViewBaseContour           * cViewer;
 517         manualContourBaseControler      * cControler;
 518
 519         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 520         cControler      = conwrapviewControl->getControler();*/
 521
 522         //JCP 21 - 11 - 2008
 523         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 524         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 525
 526         if (isedit  && ispartofstaticlst)
 527         {
 528                 _theViewPanel->removeFromScene(theKeyName);
 529
 530                 kernelManager->deleteCModel(theKeyName);
 531                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 532                 //cViewer               = conwrapviewControl->getViewer();
 533                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 534                 //cControler* conwrapviewControl->getControler();
 535         //      delete cModel;
 536         //      delete cViewer;
 537         //      delete cControler;
 538         } // if editable
 539 //JCP 21 - 11 - 08
 540 }
 541
 542 void wxContourMainFrame::onDeleteContoursActSlice(){
 543         //JCP 20-10-08 Undo redo implementation
 544         saveState();
 545         //JCP 20-10-08 Undo redo implementation
 546         deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 547 }
 548 void wxContourMainFrame::onDeleteAllContours(){
 549         //JCP 20-10-08 Undo redo implementation
 550         saveState();
 551         deleteAllContours();
 552 }
 553 void wxContourMainFrame::deleteAllContours(){
 554         //JCP 20-10-08 Undo redo implementation
 555
 556         wxBusyCursor wait;
 557         std::vector<int> tempVector;
 558         _instantPanel->getInstant( tempVector );
 559
 560 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 561 //              the values in GetStart and GetEnd will then not be initialize also.
 562 //              We use instead the values given when initializing the _deletepanel.
 563
 564         //int minZ = _mbarrangeDeleteAll->GetStart();
 565         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 566         int minZ, maxZ;
 567
 568         minZ = 0;
 569         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 570
 571 //JCP --08-09-2008
 572
 573         _theViewPanel->getSceneManager()->removeSceneContours( );
 574         _theViewPanel->getSceneManager()->removeAllOutlines();
 575         kernelManager->removeAllOutlines();
 576 //JCP --08-09-2008
 577         /*
 578         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 579         {
 580                 _theViewPanel->getSceneManager()->removeSceneContours( );
 581                 _modelManager->removeAllOutlines();
 582                 _theViewPanel->getSceneManager()->removeAllOutlines();
 583
 584         } else {
 585                 for ( z=minZ ; z<=maxZ ; z++)
 586                 {
 587                         tempVector[1]=z;
 588                         Instant instant(&tempVector);
 589                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 590
 591                         sizeLstContourThings = lstContourThings.size();
 592                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 593                         {
 594                                 ContourThing **contourthing = lstContourThings[ii];
 595                                 deleteContour( (*contourthing)->getName() );
 596                         } //for ii
 597                 }// for z
 598         } // if
 599 JCP --08-09-2008 */
 600 }
 601
 602 void wxContourMainFrame::setConceptValue( std::string name, int value ){
 603         _instantPanel->setConceptValue(name, value);
 604 }
 605
 606
 607 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
 608         return _instantPanel->getLastConceptData();
 609 }
 610
 611
 612 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
 613         return _instantPanel->getIfConceptCheckedAt( name, pos );
 614 }
 615
 616
 617
 618 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
 619 {
 620         vtkImageData * mask;
 621         vtkImageData * value;
 622         this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
 623
 624         std::vector<int> nTypeView;
 625         nTypeView.push_back(5);
 626         nTypeView.push_back(1);
 627         nTypeView.push_back(2);
 628         nTypeView.push_back(0);
 629
 630         wxFrame *frame = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
 631         wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
 632         m_mgr_noteBookViewerResult->SetManagedWindow(frame);
 633
 634         wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(frame, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
 635         m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 636
 637         wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
 638         wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
 639
 640
 641         noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
 642         noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
 643         m_mgr_noteBookViewerResult->Update();
 644         frame->Show();
 645 }
 646
 647
 648
 649
 650 void wxContourMainFrame::changeInstant()
 651 {
 652                 std::vector<int> instantVect;
 653                 _instantPanel->getInstant( instantVect );
 654                 int actualSlice = instantVect[1];
 655
 656                 kernelManager->setInstant(instantVect);
 657
 658             // Refresh Mask image
 659                 if(_viewMaskImage!=NULL){
 660                         _viewMaskImage->SetZ(actualSlice);
 661                         if (_viewMaskImagePanel->IsVisible()==true)
 662                         {
 663                                 vtkImageData *mask, *value;
 664                                 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
 665                                 _viewMaskImage->onThreshold();
 666                         }
 667                 }
 668
 669         // Refresh Threshold image
 670                 if(_viewThresholdImage!=NULL){
 671                         _viewThresholdImage->SetZ(actualSlice);
 672                         if (_viewThresholdImagePanel->IsVisible()==true){
 673                                 _viewThresholdImage->onThreshold();
 674                         }
 675                 }
 676
 677         // Refresh Threshold image
 678                 if(_viewColorLayerImage!=NULL){
 679                         _viewColorLayerImage->SetZ(actualSlice);
 680                         if (_viewColorLayerImagePanel->IsVisible()==true){
 681                                 _viewColorLayerImage->onThreshold();
 682                         }
 683                 }
 684
 685                 updateInstantOutlines();
 686                 updateInstantImageData();
 687                 updateInstantAxes();
 688 }
 689
 690
 691
 692 void wxContourMainFrame :: updateInstantOutlines()
 693 {
 694         _theViewPanel->removeSceneContours();
 695         _theViewPanel->addNameWrapperToScene();
 696
 697         //for( int i=0; i<size; i++)
 698         //{
 699         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 700         //}
 701 }
 702
 703 int wxContourMainFrame::getNamesWrappingSize(){
 704         return kernelManager->getNamesWrappingSize();
 705 }
 706 std::string wxContourMainFrame::getNameWrapping(int i){
 707         return kernelManager->getNameWrapping(i);
 708 }
 709
 710 void wxContourMainFrame::updateInstantImageData()
 711 {
 712         std::vector<int> inst;
 713         _instantPanel->getInstant(inst);
 714
 715         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 716         if(img!=NULL){
 717                 _theViewPanel->changeImage(img);
 718                 showAxis(false);
 719         }else{
 720                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 721                 _theViewPanel->setImageSlice(z);
 722         }
 723 }
 724
 725 void wxContourMainFrame::updateInstantAxes()
 726 {
 727 }
 728
 729
 730 void wxContourMainFrame::onChangeDeep(int val){
 731         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 732         changeInstant();
 733 }
 734
 735
 736 void wxContourMainFrame::onCopy(){
 737         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 738
 739         std::vector<int> tempVector;
 740         _instantPanel->getInstant( tempVector );
 741     _performingOperation->reset();
 742         _performingOperation->setStartCommand( COPY );
 743         _performingOperation->setStartOperationInstantVector( tempVector );
 744         _performingOperation->setKeyNamesOperationElems( currentSelection );
 745 }
 746
 747 void wxContourMainFrame::onPaste(){
 748
 749
 750         char theStartCommand = _performingOperation->getStartCommand();
 751         if (  theStartCommand == COPY )
 752         {
 753                 //JCP 20-10-08 Undo redo implementation
 754                 saveState();
 755                 //JCP 20-10-08 Undo redo implementation
 756                 std::vector<int> tempVector;
 757                 _instantPanel->getInstant( tempVector );
 758                 _performingOperation->setEndOperationInstantVector ( tempVector );
 759                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 760                 int i,size = elems.size();
 761                 for( i=0; i<size; i++ )
 762                 {
 763                         createCopyContourOf( elems[i], tempVector, i>0 );
 764                 }
 765         }
 766 }
 767 void wxContourMainFrame::onUndo(){
 768         std::string filename;
 769         if(kernelManager->onUndoSaveFile(filename)){
 770                 saveFileWithContours(filename);
 771         }
 772         if(kernelManager->onUndo(filename)){
 773                 loadState(filename);
 774         }
 775 }
 776 void wxContourMainFrame::onRedo(){
 777         std::string filename;
 778         if(kernelManager->onRedo(filename)){
 779                 loadState(filename);
 780         }
 781
 782 }
 783 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 784 {
 785         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 786         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 787         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 788 }
 789
 790 ///AD: 03-09    Copy the object and apply the given transformation
 791 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 792 {
 793         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 794         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 795
 796         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 797         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 798
 799         double pnt1X = refPoint1->GetX();
 800         double pnt1Y = refPoint1->GetY();
 801 //      double pnt1Z = refPoint1->GetZ();
 802         double pnt2X = refPoint2->GetX();
 803         double pnt2Y = refPoint2->GetY();
 804 //      double pnt2Z = refPoint2->GetZ();
 805
 806         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 807         vtkTransform *t = vtkTransform::New();
 808
 809         t->PostMultiply();
 810         t->Identity();
 811         t->Translate(-pnt1X, -pnt1Y, 0);
 812         t->RotateZ(-angle);
 813         t->Scale(-1,1,1);
 814         t->RotateZ(angle);
 815         t->Translate(pnt1X, pnt1Y, 0);
 816         t->Update();
 817
 818         int i,size=manualModel->GetSizeLstPoints();
 819         for (i=0;i<size;i++)
 820         {
 821                 manualPoint * mp = manualModel->GetManualPoint(i);
 822                 float vecIn[3];
 823                 float vecOut[3];
 824                 vecIn[0]=mp->GetX();
 825                 vecIn[1]=mp->GetY();
 826                 vecIn[2]=mp->GetZ();
 827                 t->TransformPoint( vecIn, vecOut );
 828                 mp->SetPointX( vecOut[0] );
 829                 mp->SetPointY( vecOut[1] );
 830                 mp->SetPointZ( vecOut[2] );
 831         }
 832
 833         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 834 }
 835
 836 //EED04
 837 void wxContourMainFrame ::loadState(std::string filename){
 838
 839         deleteAllContours();
 840         onLoadContours(filename,false);
 841
 842         /* EED Borrame
 843         char tmp[255];
 844         FILE *pFile=fopen(filename.c_str(),"r+");
 845
 846         fscanf(pFile,"%s",tmp); // --CreaContour--
 847
 848         fscanf(pFile,"%s",tmp); // Version
 849         fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 850
 851         deleteAllContours();
 852
 853         loadContours(pFile, false);
 854         loadContours(pFile, true);
 855
 856         fclose(pFile);
 857         */
 858 }
 859
 860
 861 //EED03
 862 /*EED Borrame
 863 void wxContourMainFrame::loadContours( FILE *pFile, bool staticContour )
 864 {
 865         char tmp[255];
 866
 867         if (staticContour==false)
 868         {
 869                 fscanf(pFile,"%s",tmp); // ImageDimensions
 870                 fscanf(pFile,"%s",tmp); // X
 871                 fscanf(pFile,"%s",tmp); // Y
 872                 fscanf(pFile,"%s",tmp); // Z
 873
 874                 fscanf(pFile,"%s",tmp); // ImageSpacing
 875                 fscanf(pFile,"%s",tmp); // X
 876                 fscanf(pFile,"%s",tmp); // Y
 877                 fscanf(pFile,"%s",tmp); // Z
 878         }
 879
 880         fscanf(pFile,"%s",tmp); // NumberOfContours
 881         fscanf(pFile,"%s",tmp); // ##
 882         int numberOfContours = atoi(tmp);
 883
 884         std::vector<int> instantVector;
 885         int typeContourModel;
 886         manualBaseModel *manModelContour;
 887         int typeView;
 888
 889         int i;
 890         for (i=0;i<numberOfContours;i++)
 891         {
 892                 instantVector.clear();
 893                 fscanf(pFile,"%s",tmp); // Instant
 894                 fscanf(pFile,"%s",tmp); // 1
 895                 instantVector.push_back( atoi(tmp) );
 896                 fscanf(pFile,"%s",tmp); // 2
 897                 instantVector.push_back( atoi(tmp) );
 898                 fscanf(pFile,"%s",tmp); // 3
 899                 instantVector.push_back( atoi(tmp) );
 900                 fscanf(pFile,"%s",tmp); // 4
 901                 instantVector.push_back( atoi(tmp) );
 902                 fscanf(pFile,"%s",tmp); // 5
 903                 instantVector.push_back( atoi(tmp) );
 904                 fscanf(pFile,"%s",tmp); // 6
 905                 instantVector.push_back( atoi(tmp) );
 906
 907                 fscanf(pFile,"%s",tmp); // TypeContourModel
 908                 fscanf(pFile,"%s",tmp); // ##
 909                 typeContourModel = atoi(tmp);
 910
 911                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
 912                 manModelContour->Open(pFile);
 913
 914                 fscanf(pFile,"%s",tmp); // TypeView
 915                 fscanf(pFile,"%s",tmp); // ##
 916                 typeView = atoi(tmp);
 917
 918                 std::string theName;
 919                 theName = kernelManager->createOutline( manModelContour, instantVector );
 920                 bool addedModel = theName.compare("") != 0;
 921                 if( addedModel )
 922                 {
 923                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 924                         _theViewPanel->getSpacing(spc);
 925                         //Adding the manualContourControler to interface objects structure
 926                         //Adding the manualViewContour to interface objects structure
 927                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 928                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
 929                 }
 930
 931                 if (staticContour==true)
 932                 {
 933                         Instant instant(&instantVector);
 934                         kernelManager->changeContourOfManager( theName , &instant );
 935                 }
 936         }// for  numberOfContours
 937 }
 938 */
 939
 940
 941 void wxContourMainFrame::onLoad()
 942 {
 943         std::string fileNameContourROI = GetFileLocation();
 944 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 945         if(GetFileLocation().empty())
 946         {
 947 //------------------------------------------------------------------------------------------------------------
 948                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 949                 if (dialog.ShowModal() == wxID_OK)
 950                 {
 951                         fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 952                 }
 953         }
 954
 955         onLoadContours(fileNameContourROI,true);
 956 }
 957
 958
 959 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
 960 {
 961         char tmp[255];
 962         char tmpD[255];
 963
 964         FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
 965
 966
 967 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
 968         if(pFile != NULL)
 969         {
 970 //------------------------------------------------------------------------------------------------------------
 971         fileNameContourROI.append("data");
 972                 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
 973                 if(pFileData != NULL)
 974                 {
 975                         fscanf(pFileData,"%s",tmpD); // --CreaContour--
 976                         fscanf(pFileData,"%s",tmpD); // Version
 977                         fscanf(pFileData,"%s",tmpD); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 978
 979                         fscanf(pFileData,"%s",tmpD); // onePixelSize
 980                         fscanf(pFileData,"%s",tmpD); // #
 981                         _onePixelSize = atof(tmpD);
 982                         fscanf(pFileData,"%s",tmpD); // NumberOfContours
 983                         fscanf(pFileData,"%s",tmpD); // #
 984                 }
 985
 986                 fscanf(pFile,"%s",tmp); // --CreaContour--
 987
 988                 fscanf(pFile,"%s",tmp); // Version
 989                 fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 990                 std::string version(tmp);
 991
 992                 //AD:02-06-09
 993         _tmpReadFileTypeOfTransformation=-1;
 994                 if (version=="1.0.3")
 995                 {
 996                     readDimSpc(pFile,interactiveInterface);   // DimSpc interactive ON
 997                         openContours(pFile,pFileData,false);
 998                         openContours(pFile,pFileData,true);     //Load StaticContours
 999                 }
1000
1001                 if (version=="1.0.2")
1002                 {
1003 //EED001
1004                     readDimSpc(pFile,interactiveInterface);  // DimSpc interactive ON
1005                         openContours(pFile,pFileData,false);
1006                     readDimSpc(pFile,false);  // DimSpc interactive OFF
1007                         openContours(pFile,pFileData,true);     //Load StaticContours
1008                 }
1009
1010                 //AD:02-06-09
1011                 else if (version=="1.0.1")
1012                 {
1013                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
1014                         openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
1015                 }
1016
1017                 //AD:02-06-09
1018                 else if (version=="1.0.0")
1019                 {
1020                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
1021                 }
1022
1023                 fclose(pFile);
1024
1025                 if(pFileData != NULL)
1026                 {
1027                         fclose(pFileData);
1028                 }
1029         }
1030         _theViewPanel->getSceneManager()->removeSceneContours();
1031         changeInstant();
1032
1033 }
1034
1035
1036
1037 void wxContourMainFrame::onImport(){
1038         std::string filename, filenamecontours;
1039         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
1040
1041         if (dialog.ShowModal() == wxID_OK)
1042         {
1043                 filename = dialog.GetPath().mb_str();
1044                 filenamecontours = kernelManager->parseOsirixFile(filename);
1045
1046                 if(filenamecontours.compare("") != 0){
1047                         onLoadContours(filenamecontours,true);
1048                 }
1049
1050         }
1051 }
1052 void wxContourMainFrame::onTest(){
1053         std::string filename, filenamecontours;
1054         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1055
1056         if (dialog.ShowModal() == wxID_OK)
1057         {
1058                 filename = dialog.GetPath().mb_str();
1059                 std::cout << "This is the filename: " << filename << std::endl;
1060         }
1061 }
1062
1063
1064 //AD: 29-05-09
1065 void wxContourMainFrame::onSave(){
1066 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1067         if(GetFileLocation().empty())
1068         {
1069 //------------------------------------------------------------------------------------------------------------
1070                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1071                 if (dialog.ShowModal() == wxID_OK)
1072                 {
1073                         std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1074                         kernelManager->setCurrentFileName(fileNameContourROI);
1075                         saveFileWithContours( fileNameContourROI );
1076                 }
1077         }
1078 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1079         else
1080         {
1081                 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1082                 std::string fileNameContourROI = GetFileLocation();
1083                 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1084                 kernelManager->setCurrentFileName(fileNameContourROI);
1085                 saveFileWithContours( fileNameContourROI);
1086         }
1087 //------------------------------------------------------------------------------------------------------------
1088 }
1089
1090 //AD: 29-05-09
1091 void wxContourMainFrame::saveFileWithContours( std::string filename )
1092 {
1093
1094         FILE *pFile=fopen(filename.c_str(),"w+");
1095
1096 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1097         filename.append("data");
1098         std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1099         FILE *pFileData=fopen(filename.c_str(),"w+");
1100 //------------------------------------------------------------------------------------------------------------
1101
1102         std::vector< std::string > lstNameThings;
1103         int i,sizeLstNameThings;
1104
1105         fprintf(pFile,"--CreaContour--\n");
1106         fprintf(pFile,"Version %s\n", "1.0.3" );
1107
1108 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1109         fprintf(pFileData,"--CreaContour--\n");
1110         fprintf(pFileData,"Version %s\n", "1.0.3" );
1111         fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1112
1113 //------------------------------------------------------------------------------------------------------------
1114
1115         vtkImageData *image = _images[0];
1116
1117         int dimRange[3];
1118         image->GetDimensions(dimRange);
1119
1120         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1121
1122         double spaRange[3];
1123         image->GetSpacing(spaRange);
1124
1125         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1126
1127         // Normal Contours
1128
1129         lstNameThings           = kernelManager->GetLstNameThings();
1130         sizeLstNameThings       = lstNameThings.size();
1131         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1132
1133 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1134         fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1135 //------------------------------------------------------------------------------------------------------------
1136
1137         for (i=0 ; i<sizeLstNameThings ; i++)
1138         {
1139 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1140                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1141                 double sizeInPixel = manualModel ->GetPathSize();
1142                 double realContourSize = sizeInPixel*_onePixelSize;
1143                 manualModel ->SetRealSize(realContourSize);
1144 //------------------------------------------------------------------------------------------------------------
1145
1146         //int size= kernelManager->GetLstNameThings().size();
1147
1148                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1149                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1150         }// for i
1151
1152         //-- Static Contours
1153
1154 //      fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1155 //      fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1156
1157         lstNameThings           = kernelManager->GetLstNameThingsStatic();
1158         sizeLstNameThings       = lstNameThings.size();
1159         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1160
1161 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1162         fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1163 //------------------------------------------------------------------------------------------------------------
1164
1165         for (i=0 ; i<sizeLstNameThings ; i++)
1166         {
1167                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1168                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1169         }// for i
1170         fclose(pFile);
1171         fclose(pFileData);
1172 }
1173
1174
1175 //EED02
1176 void wxContourMainFrame::readDimSpc(FILE *pFile, bool interactiveOption)
1177 {
1178         char tmp[255];
1179         int             imageDim[3];
1180         double          imageSpac[3];
1181         vtkImageData    *image          = _images[0];
1182     image->GetDimensions(imageDim);
1183     image->GetSpacing(imageSpac);
1184
1185     fscanf(pFile,"%s",tmp); // ImageDimensions
1186     fscanf(pFile,"%s",tmp); // X
1187     _tmpReadFileImageDim[0] = atoi(tmp);
1188     fscanf(pFile,"%s",tmp); // Y
1189     _tmpReadFileImageDim[1] = atoi(tmp);
1190     fscanf(pFile,"%s",tmp); // Z
1191     _tmpReadFileImageDim[2] = atoi(tmp);
1192
1193     fscanf(pFile,"%s",tmp); // ImageSpacing
1194     fscanf(pFile,"%s",tmp); // X
1195     _tmpReadFileImageSpac[0] = atof(tmp);
1196     fscanf(pFile,"%s",tmp); // Y
1197     _tmpReadFileImageSpac[1] = atof(tmp);
1198     fscanf(pFile,"%s",tmp); // Z
1199     _tmpReadFileImageSpac[2] = atof(tmp);
1200
1201
1202         if (interactiveOption==true)
1203     {
1204                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1205                 if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
1206                 {
1207                         wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(260,160));
1208                         wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1209                         wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1210
1211                         wxString lstOptOperation[2];
1212                         lstOptOperation[0]=_T("By Dimension");
1213                         lstOptOperation[1]=_T("By Spacing");
1214                         wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation,  2, wxRA_SPECIFY_COLS);
1215
1216                         dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1217                         dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1218                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1219                         dialSizer->Add(radioOpts,0,wxGROW);
1220                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1221                         dialSizer->Add(buttonsSizer,0,wxGROW);
1222                         dial->SetSizer(dialSizer, true);
1223                         dial->Layout();
1224                         dial->ShowModal();
1225
1226                         int _tmpReadFileTypeOfTransformation = -1;
1227 //EED                   bool transform = false;
1228
1229                         if (dial->GetReturnCode() == wxID_OK)
1230                         {
1231                                 _tmpReadFileTypeOfTransformation    = radioOpts->GetSelection();
1232                         }// if wxOK
1233
1234                 } // if dim spc
1235     } // if interactiveOption
1236 }
1237
1238
1239
1240
1241 //AD:04-06-09
1242 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
1243 {
1244
1245         char tmp[255];
1246
1247         vtkImageData    *image = _images[0];
1248
1249         int             imageDim[3];
1250         double          imageSpac[3];
1251     image->GetDimensions(imageDim);
1252     image->GetSpacing(imageSpac);
1253
1254
1255         fscanf(pFile,"%s",tmp); // NumberOfContours
1256         fscanf(pFile,"%s",tmp); // ##
1257         int numberOfContours = atoi(tmp);
1258
1259         std::vector<int> instantVector;
1260         int typeContourModel;
1261         manualBaseModel *manModelContour;
1262         int typeView;
1263
1264 /*
1265         if (compatible==true)
1266         {
1267                 int i;
1268                 for (i=0;i<numberOfContours;i++)
1269                 {
1270                         instantVector.clear();
1271                         fscanf(pFile,"%s",tmp); // Instant
1272
1273                         fscanf(pFile,"%s",tmp); // 1
1274                         instantVector.push_back( atoi(tmp) );
1275                         fscanf(pFile,"%s",tmp); // 2
1276                         instantVector.push_back( atoi(tmp) );
1277                         fscanf(pFile,"%s",tmp); // 3
1278                         instantVector.push_back( atoi(tmp) );
1279                         fscanf(pFile,"%s",tmp); // 4
1280                         instantVector.push_back( atoi(tmp) );
1281                         fscanf(pFile,"%s",tmp); // 5
1282                         instantVector.push_back( atoi(tmp) );
1283                         fscanf(pFile,"%s",tmp); // 6
1284                         instantVector.push_back( atoi(tmp) );
1285
1286
1287                         fscanf(pFile,"%s",tmp); // TypeContourModel
1288                         fscanf(pFile,"%s",tmp); // ##
1289                         typeContourModel = atoi(tmp);
1290
1291                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1292                         manModelContour->Open(pFile);
1293                         if(pFileData != NULL)
1294                         {
1295                                 manModelContour->OpenData(pFileData);
1296                         }
1297
1298                         fscanf(pFile,"%s",tmp); // TypeView
1299                         fscanf(pFile,"%s",tmp); // ##
1300                         typeView = atoi(tmp);
1301
1302                         std::string theName;
1303                         theName = kernelManager->createOutline( manModelContour, instantVector );
1304                         bool addedModel = theName.compare("") != 0;
1305                         if( addedModel )
1306                         {
1307                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1308                                 _theViewPanel->getSpacing(spc);
1309                                 //Adding the manualContourControler to interface objects structure
1310                                 //Adding the manualViewContour to interface objects structure
1311                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1312                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1313                         }
1314
1315                         if (staticContour) //StaticContours (will appear in all slices)
1316                         {
1317                                 Instant instant(&instantVector);
1318                                 kernelManager->changeContourOfManager( theName , &instant );
1319                         }
1320
1321                 }// for  numberOfContours
1322         }
1323
1324         else if (compatible==false)
1325         {
1326 */
1327
1328                 int i;
1329                 for (i=0;i<numberOfContours;i++)
1330                 {
1331                         instantVector.clear();
1332                         fscanf(pFile,"%s",tmp); // Instant
1333
1334                         fscanf(pFile,"%s",tmp); // 1
1335                         instantVector.push_back( atoi(tmp) );
1336                         fscanf(pFile,"%s",tmp); // 2
1337                         instantVector.push_back( atoi(tmp) );
1338                         fscanf(pFile,"%s",tmp); // 3
1339                         instantVector.push_back( atoi(tmp) );
1340                         fscanf(pFile,"%s",tmp); // 4
1341                         instantVector.push_back( atoi(tmp) );
1342                         fscanf(pFile,"%s",tmp); // 5
1343                         instantVector.push_back( atoi(tmp) );
1344                         fscanf(pFile,"%s",tmp); // 6
1345                         instantVector.push_back( atoi(tmp) );
1346
1347                         fscanf(pFile,"%s",tmp); // TypeContourModel
1348                         fscanf(pFile,"%s",tmp); // ##
1349                         typeContourModel = atoi(tmp);
1350
1351                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1352                         manModelContour->Open(pFile);
1353                         if(pFileData != NULL)
1354                         {
1355                                 manModelContour->OpenData(pFileData);
1356                         }
1357
1358             if (_tmpReadFileTypeOfTransformation==-1){
1359                 //nothing to do..
1360             } else if (_tmpReadFileTypeOfTransformation==0){
1361                 double transX, transY;
1362                 transX = (double) imageDim[0]/_tmpReadFileImageDim[0];
1363                 transY = (double) imageDim[1]/_tmpReadFileImageDim[1];
1364                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1365             } else if (_tmpReadFileTypeOfTransformation==1) {
1366                 double transX, transY;
1367                 transX = (double) _tmpReadFileImageSpac[0]/imageDim[0];
1368                 transY = (double) _tmpReadFileImageSpac[1]/imageDim[1];
1369                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1370             }
1371
1372                         fscanf(pFile,"%s",tmp); // TypeView
1373                         fscanf(pFile,"%s",tmp); // ##
1374                         typeView = atoi(tmp);
1375
1376                         std::string theName;
1377                         theName = kernelManager->createOutline( manModelContour, instantVector );
1378                         bool addedModel = theName.compare("") != 0;
1379                         if( addedModel )
1380                         {
1381                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1382                                 _theViewPanel->getSpacing(spc);
1383                                 //Adding the manualContourControler to interface objects structure
1384                                 //Adding the manualViewContour to interface objects structure
1385                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1386                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1387                         }
1388
1389                         if (staticContour) //StaticContours (will appear in all slices)
1390                         {
1391                                 Instant instant(&instantVector);
1392                                 kernelManager->changeContourOfManager( theName , &instant );
1393                         }
1394                 }// for  numberOfContours
1395
1396 /*      }    */
1397
1398 }
1399
1400 void wxContourMainFrame::RefreshInterface(){
1401         changeInstant();
1402         _theViewPanel->RefreshInterface();
1403         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1404         //wxvtk2dbaseview->Refresh();
1405 }
1406
1407 vtkImageData* wxContourMainFrame::getImageData(){
1408         return _theViewPanel->getImageData();
1409 }
1410
1411 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1412 {
1413         //JCP 20-10-08 Undo redo implementation
1414         saveState();
1415         //JCP 20-10-08 Undo redo implementation
1416
1417         wxBusyCursor wait;
1418         int                                     x                                       = _theViewPanel->GetX();
1419         int                                     y                                       = _theViewPanel->GetY();
1420         int                                     z                                       = _theViewPanel->GetZ();
1421         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1422         RefreshInterface();
1423 }
1424
1425 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1426 {
1427         int typeofcontour = 1;
1428         //Image Data
1429         vtkImageData    *imagedata      = getImageData();
1430
1431         //Tipo de pixeles a utilizar internamente en ITK
1432         typedef   float  InternalPixelType;
1433         const     unsigned int    Dimension = 2;
1434         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1435
1436         //Tipo de pixeles de salida 1
1437         typedef unsigned char OutputPixelType;
1438         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1439
1440         //Tipo de pixeles de salida 2
1441         typedef unsigned short OutputPixelType2;
1442         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1443
1444         //DefiniciÛn del thresholder
1445         typedef itk::BinaryThresholdImageFilter<
1446                                                         InternalImageType,
1447                                                         OutputImageType    >    ThresholdingFilterType;
1448
1449         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1450         typedef itk::CastImageFilter<
1451                                 OutputImageType, OutputImageType2 >  CastFilterType;
1452
1453         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1454         typedef itk::CastImageFilter<
1455                                 OutputImageType2, InternalImageType >  CastFilterType2;
1456
1457         //Tercer tipo de conversiÛn
1458         typedef itk::RescaleIntensityImageFilter<
1459                                                                 InternalImageType,
1460                                                                 OutputImageType >   CastFilterType3;
1461
1462         //Cuarto tipo de conversiÛn
1463         typedef itk::RescaleIntensityImageFilter<
1464                                                                 OutputImageType,
1465                                                                 OutputImageType >   CastFilterType4;
1466
1467         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1468
1469         thresholder->SetLowerThreshold( 0.0 );
1470         thresholder->SetUpperThreshold( 128 );
1471
1472         thresholder->SetOutsideValue(  255  );
1473         thresholder->SetInsideValue(  0 );
1474
1475         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1476         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1477         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1478 //EED10JUIN2011 typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1479
1480         ConnectorType::Pointer connector= ConnectorType::New();
1481         ConnectorType2::Pointer connector2= ConnectorType2::New();
1482
1483
1484         CastFilterType::Pointer filter=CastFilterType::New();
1485         CastFilterType2::Pointer filter2=CastFilterType2::New();
1486
1487         connector->SetInput( imagedata );
1488         filter2->SetInput(connector->GetOutput());
1489
1490         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1491                                                                 InternalImageType,
1492                                                                 InternalImageType >  SmoothingFilterType;
1493
1494         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1495
1496         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1497                                                                 InternalImageType,
1498                                                                 InternalImageType >  GradientFilterType;
1499
1500         typedef   itk::SigmoidImageFilter<
1501                                                                 InternalImageType,
1502                                                                 InternalImageType >  SigmoidFilterType;
1503
1504         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1505
1506         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1507
1508         sigmoid->SetOutputMinimum(  0.0  );
1509         sigmoid->SetOutputMaximum(  255.0  );
1510
1511
1512         typedef  itk::FastMarchingImageFilter<
1513                                                                 InternalImageType,
1514                                                                 InternalImageType >    FastMarchingFilterType;
1515
1516
1517         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1518
1519 printf("EED wxContourMainFrame::SegmentationOneSliceITK  Skypping this code.  Not compiling   GeodesicActiveContourLevelSetImageFilter     in fedora 17 with ITK 3.20.1 \n ");
1520 /*EED 17 sept 2010
1521  >>>>>>>>>>>  Not compiling   GeodesicActiveContourLevelSetImageFilter     in fedora 17 with ITK 3.20.1
1522
1523
1524         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1525                                         InternalImageType >    GeodesicActiveContourFilterType;
1526         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1527                                                                                 GeodesicActiveContourFilterType::New();
1528
1529         typedef  itk::ZeroCrossingImageFilter<
1530                                                                 InternalImageType,
1531                                                                 InternalImageType >    ZeroCrossingFilterType;
1532         ZeroCrossingFilterType::Pointer zeroCrossing =
1533                                                         ZeroCrossingFilterType::New();
1534
1535         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1536
1537         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1538         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1539         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1540
1541         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1542         int it=atoi(  crea::wx2std(iter).c_str() );
1543         geodesicActiveContour->SetNumberOfIterations( it );
1544
1545         smoothing->SetInput( filter2->GetOutput() );
1546         gradientMagnitude->SetInput( smoothing->GetOutput() );
1547         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1548         fastMarching->SetInput( sigmoid->GetOutput() );
1549         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1550         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1551
1552         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1553         //thresholder->SetInput( zeroCrossing->GetOutput() );
1554         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1555         connector2->SetInput( thresholder->GetOutput()  );
1556
1557 <<<<<<<<<<<<<<<<<<<
1558 */
1559
1560
1561
1562
1563         smoothing->SetTimeStep( 0.125 );
1564         smoothing->SetNumberOfIterations(  5 );
1565         smoothing->SetConductanceParameter( 9.0 );
1566
1567
1568         const double sigma = atof(  crea::wx2std(sigm).c_str() );
1569         gradientMagnitude->SetSigma(  sigma  );
1570
1571         const double alpha =  atof(  crea::wx2std(alf).c_str() );
1572         const double beta  =  atof(  crea::wx2std(bet).c_str() );
1573
1574         sigmoid->SetAlpha( alpha );
1575         sigmoid->SetBeta(  beta  );
1576
1577         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1578         typedef FastMarchingFilterType::NodeType       NodeType;
1579
1580         NodeContainer::Pointer seeds = NodeContainer::New();
1581
1582         InternalImageType::IndexType  seedPosition;
1583         seedPosition[0] = x;
1584         seedPosition[1] = y;
1585
1586         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1587
1588         NodeType node;
1589
1590         const double seedValue = - initialDistance;
1591
1592         node.SetValue( seedValue );
1593         node.SetIndex( seedPosition );
1594
1595         seeds->Initialize();
1596         seeds->InsertElement( 0, node );
1597
1598         fastMarching->SetTrialPoints( seeds );
1599
1600         fastMarching->SetSpeedConstant( 1.0 );
1601
1602         fastMarching->SetOutputSize(
1603                         connector->GetOutput()->GetBufferedRegion().GetSize() );
1604
1605         fastMarching->SetStoppingValue( 800 );
1606         try
1607     {
1608
1609         connector2->Update();
1610         vtkImageData *idata = connector2->GetOutput();
1611
1612         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1613
1614         cntVTK->SetInput( idata );
1615
1616         cntVTK->SetNumberOfContours( 1 );
1617         cntVTK->SetValue( 0, 255 );
1618         cntVTK->Update( );
1619         cntVTK->UpdateInformation();
1620
1621         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1622         cpd->SetInput( cntVTK->GetOutput( ) );
1623         cpd->Update( );
1624         cpd->UpdateInformation();
1625
1626         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1627         conn->SetExtractionModeToLargestRegion( );
1628         conn->SetInput( cpd->GetOutput( ) );
1629         conn->Update( );
1630         conn->UpdateInformation();
1631
1632         vtkStripper* vtkstripper = vtkStripper::New( );
1633         vtkstripper->SetInput( conn->GetOutput() );
1634         vtkstripper->Update();
1635         vtkstripper->UpdateInformation();
1636
1637         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1638         //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1639         polyDataResult->Update( );
1640         polyDataResult->UpdateInformation();
1641
1642         //EED
1643                 /*
1644         ofstream myfile;
1645         myfile.open ("C:/Creatis/example.txt");
1646         myfile << "\n";
1647         polyDataResult->Print(myfile);
1648         myfile << "-------------------------------------\n";
1649         polyDataResult->GetLines()->Print(myfile);
1650         myfile.close();*/
1651
1652         cntVTK          -> Delete();
1653         cpd                     -> Delete();
1654         conn            -> Delete();
1655
1656
1657         //--Calculating control points
1658
1659         std::vector<double> vecX;
1660         std::vector<double> vecY;
1661         std::vector<double> vecXo;
1662         std::vector<double> vecYo;
1663         std::vector<double>::iterator vecXoi;
1664         std::vector<double>::iterator vecYoi;
1665         std::vector<double> vecZ;
1666
1667         std::vector<double> vecCtrlPointX;
1668         std::vector<double> vecCtrlPointY;
1669         std::vector<double> vecCtrlPointZ;
1670
1671
1672         double *p;
1673         double xAct=0;
1674         double yAct=0;
1675         int ii,size=polyDataResult->GetNumberOfPoints();
1676         ofstream myfile;
1677         myfile.open ("C:/Creatis/example2.txt");
1678
1679         size=polyDataResult->GetNumberOfPoints();
1680         for (ii=0;ii<size;ii++)
1681         {
1682                 if(ii==0)
1683                 {
1684                         xAct=x;
1685                         yAct=y;
1686                 }
1687                 p       = polyDataResult->GetPoint(ii);
1688                 double x=p[0];
1689                 double y=p[1];
1690                 /*if(fabs(yAct-y)>20)
1691                 {
1692                         if((xAct-x)>1 || (xAct-x)<-1)
1693                         {
1694                         vecX.push_back( p[0] );
1695                         vecY.push_back( p[1] );
1696                         myfile <<p[0]<<","<<p[1]<<"\n";
1697                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1698                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1699                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1700                         vecZ.push_back( 900 );
1701                         xAct=x;
1702                         yAct=y;
1703                         }
1704                         else
1705                         {
1706                                 vecXo.push_back(p[0]);
1707                                 vecYo.push_back(p[1]);
1708                         }
1709
1710                 }
1711                 else*/ if(fabs(xAct-x)>11)
1712                 {
1713                         vecXo.push_back(p[0]);
1714                         vecYo.push_back(p[1]);
1715                 }
1716                 else
1717                 {
1718                 vecX.push_back( p[0] );
1719                 myfile <<p[0]<<","<<p[1]<<"\n";
1720                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1721                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1722                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1723                 vecY.push_back( p[1] );
1724                 vecZ.push_back( 900 );
1725                 xAct=x;
1726                 yAct=y;
1727                 }
1728
1729
1730         }
1731
1732         while(!vecXo.empty())
1733         {
1734                 vecX.push_back(vecXo.back());
1735                 //std::cout<<" x Siguiente "<<vecXo.back();
1736                 vecXo.pop_back();
1737                 vecZ.push_back( 900 );
1738         }
1739         while(!vecYo.empty())
1740         {
1741                 vecY.push_back(vecYo.back());
1742                         vecYo.pop_back();
1743         }
1744         myfile.close();
1745
1746         /*for(int l=0;l<vecX.size();l++)
1747         {
1748                 if(l==0)
1749                 {
1750             vecXo.push_back(p[0]);
1751                         vecYo.push_back(p[1]);
1752                 }
1753                 else
1754                 {
1755                         if(vecXoi[l-1]==)
1756                         {
1757                         }
1758                 }
1759
1760         }*/
1761
1762         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1763
1764         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1765
1766         int method=2;
1767         if (method==0){
1768                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1769         }
1770         else if (method==1){
1771                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1772         }
1773         else if (method==2){
1774                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1775                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1776         }
1777         //--Adding contour to the system
1778
1779         std::vector<int> actualInstantVector;
1780         _instantPanel->getInstant( actualInstantVector );
1781         actualInstantVector[1]=z;
1782
1783         int j,sizeCtrPt = vecCtrlPointX.size();
1784
1785         manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1786         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1787         if (sizeCtrPt>=3){
1788                 for (j=0 ; j<sizeCtrPt ; j++)
1789                 {
1790                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1791                 } // for
1792                 std::string theName;
1793                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1794                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1795                 bool addedModel = theName.compare("") != 0;
1796                 if( addedModel )
1797                 {
1798                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1799                         _theViewPanel->getSpacing(spc);
1800                         //Adding the manualContourControler to interface objects structure
1801                         //Adding the manualViewContour to interface objects structure
1802                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1803                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1804                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1805                 }       // if addedModel
1806         } // if sizeCtrPt
1807
1808
1809 /*
1810 //EED10JUIN2011
1811                  WriterType::Pointer writer = WriterType::New();
1812          CastFilterType3::Pointer caster = CastFilterType3::New();
1813
1814                  caster->SetInput( gradientMagnitude->GetOutput() );
1815                  writer->SetInput( caster->GetOutput() );
1816                  writer->SetFileName("Gradient Magnitude.png");
1817                  caster->SetOutputMinimum(   0 );
1818                  caster->SetOutputMaximum( 255 );
1819                  writer->Update();
1820
1821                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1822                  WriterType::Pointer writer2 = WriterType::New();
1823
1824                  caster2->SetInput( sigmoid->GetOutput() );
1825                  writer2->SetInput( caster2->GetOutput() );
1826                  writer2->SetFileName("Sigmoid.png");
1827                  caster2->SetOutputMinimum(   0 );
1828                  caster2->SetOutputMaximum( 255 );
1829                  writer2->Update();
1830
1831                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1832                  WriterType::Pointer writer3 = WriterType::New();
1833
1834                  caster3->SetInput( fastMarching->GetOutput() );
1835                  writer3->SetInput( caster3->GetOutput() );
1836                  writer3->SetFileName("FastMarching.bmp");
1837                  caster3->SetOutputMinimum(   0 );
1838                  caster3->SetOutputMaximum( 255 );
1839                  writer3->Update();
1840
1841                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1842                  WriterType::Pointer writer4 = WriterType::New();
1843
1844                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1845                  writer4->SetInput( caster4->GetOutput() );
1846                  writer4->SetFileName("GeodesicActiveContour.png");
1847                  caster4->SetOutputMinimum(   0 );
1848                  caster4->SetOutputMaximum( 255 );
1849                  writer4->Update();
1850
1851                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1852                  WriterType::Pointer writer5 = WriterType::New();
1853
1854                  caster5->SetInput( zeroCrossing->GetOutput() );
1855                  writer5->SetInput( caster5->GetOutput() );
1856                  writer5->SetFileName("ZeroCrossing.bmp");
1857                  caster5->SetOutputMinimum(   0 );
1858                  caster5->SetOutputMaximum( 255 );
1859                  writer5->Update();
1860 */
1861     }
1862   catch( itk::ExceptionObject & excep )
1863     {
1864     std::cerr << "Exception caught !" << std::endl;
1865     std::cerr << excep << std::endl;
1866     }
1867 }
1868
1869 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1870
1871         //JCP 20-10-08 Undo redo implementation
1872         saveState();
1873         //JCP 20-10-08 Undo redo implementation
1874
1875         wxBusyCursor wait;
1876         int                                     x                                       = _theViewPanel->GetX();
1877         int                                     y                                       = _theViewPanel->GetY();
1878         int                                     z                                       = _theViewPanel->GetZ();
1879         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1880         RefreshInterface();
1881 }
1882
1883
1884 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1885 {
1886         int typeofcontour = 1;
1887         //--Extracting Contour
1888         //vtkImageData  *imagedata      = _theViewPanel->getSceneManager()->GetImageData();
1889         vtkImageData    *imagedata      = getImageData();
1890 //              double                  *range          = imagedata->GetScalarRange();
1891 //              double                  thr                     = 1;
1892
1893         vtkImageReslice *imageReslice = vtkImageReslice::New();
1894 //EED
1895 //              double spc[3];
1896 //              imagedata->GetSpacing(spc);
1897 //              x = x*spc[0];
1898 //              y = y*spc[1];
1899 //              z = z*spc[3];
1900
1901         imageReslice->SetInput( imagedata );
1902         imageReslice->SetInformationInput(imagedata);
1903         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1904         imageReslice->SetResliceAxesOrigin(0,0,z);
1905         imageReslice->SetOutputDimensionality(2);
1906         imageReslice->SetInterpolationModeToLinear();
1907
1908         imagedata = imageReslice->GetOutput();
1909         imagedata->Update();
1910         imagedata->UpdateInformation();
1911
1912         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1913         cntVTK->SetInput( imagedata );
1914
1915         cntVTK->SetNumberOfContours( 1 );
1916         //cntVTK->SetValue( 0, vmin );
1917 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1918         cntVTK->SetValue( 1, isovalue );
1919 //      cntVTK->SetValue( 1, vmax );
1920         cntVTK->Update( );
1921         cntVTK->UpdateInformation();
1922
1923         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1924         cpd->SetInput( cntVTK->GetOutput( ) );
1925         cpd->ConvertLinesToPointsOff( );
1926         cpd->Update( );
1927         cpd->UpdateInformation();
1928
1929         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1930         conn->SetExtractionModeToClosestPointRegion( );
1931         //conn->SetMaxRecursionDepth( 3000 );
1932
1933         conn->SetInput( cpd->GetOutput( ) );
1934
1935         conn->SetClosestPoint( x, y, 0 );
1936         conn->Update( );
1937         conn->UpdateInformation();
1938
1939         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1940         cpd2->SetInput( conn->GetOutput( ) );
1941         cpd2->Update();
1942         cpd2->UpdateInformation();
1943
1944         vtkStripper* vtkstripper = vtkStripper::New( );
1945         vtkstripper->SetInput( cpd2->GetOutput() );
1946         vtkstripper->Update();
1947         vtkstripper->UpdateInformation();
1948
1949
1950         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1951
1952         polyDataResult->Update( );
1953         polyDataResult->UpdateInformation();
1954
1955 /* EED
1956 ofstream myfile;
1957 myfile.open ("c:/temp/example.txt");
1958 myfile << "\n";
1959 polyDataResult->Print(myfile);
1960 myfile << "-------------------------------------\n";
1961 polyDataResult->GetLines()->Print(myfile);
1962 myfile.close();
1963 */
1964
1965         cntVTK          -> Delete();
1966         cpd2            -> Delete();
1967         cpd                     -> Delete();
1968         conn            -> Delete();
1969
1970
1971 //--Calculating control points
1972
1973         std::vector<double> vecX;
1974         std::vector<double> vecY;
1975         std::vector<double> vecZ;
1976
1977         std::vector<double> vecCtrlPointX;
1978         std::vector<double> vecCtrlPointY;
1979         std::vector<double> vecCtrlPointZ;
1980
1981
1982         double *p;
1983         int ii,size=polyDataResult->GetNumberOfPoints();
1984         int id;
1985         for (ii=1;ii<=size;ii++)
1986         {
1987                 id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1988                 p       = polyDataResult->GetPoint(id);
1989 //              double x=p[0];
1990 //              double y=p[1];
1991                 vecX.push_back( p[0] );
1992                 vecY.push_back( p[1] );
1993                 vecZ.push_back( 900 );
1994 //                      vecZ.push_back( p[2] );
1995         }
1996
1997
1998         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1999         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
2000
2001 //PROOFS
2002         /*if (methodRadiobox->GetSelection()==0){
2003                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2004         }
2005         if (methodRadiobox->GetSelection()==1){
2006                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2007         }
2008         if (methodRadiobox->GetSelection()==2){
2009                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
2010                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2011         }*/
2012
2013         if (method==0){
2014                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2015         }
2016         else if (method==1){
2017                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2018         }
2019         else if (method==2){
2020                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
2021                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2022         }
2023
2024         //--Adding contour to the system
2025
2026         std::vector<int> actualInstantVector;
2027         _instantPanel->getInstant( actualInstantVector );
2028         actualInstantVector[1]=z;
2029
2030         int j,sizeCtrPt = vecCtrlPointX.size();
2031         manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
2032         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
2033         if (sizeCtrPt>=3){
2034                 for (j=0 ; j<sizeCtrPt ; j++)
2035                 {
2036                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
2037                 } // for
2038                 std::string theName;
2039                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
2040                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
2041                 bool addedModel = theName.compare("") != 0;
2042                 if( addedModel )
2043                 {
2044                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2045                         _theViewPanel->getSpacing(spc);
2046                         //Adding the manualContourControler to interface objects structure
2047                         //Adding the manualViewContour to interface objects structure
2048                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2049                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
2050                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
2051                 }       // if addedModel
2052         } // if sizeCtrPt
2053 }
2054 int wxContourMainFrame::GetImageDataSizeZ(){
2055         return _theViewPanel->GetImageDataSizeZ();
2056 }
2057
2058 void wxContourMainFrame::GetImageDataRange(double *range){
2059         _theViewPanel->GetImageDataRange(range);
2060 }
2061
2062 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
2063         //JCP 20-10-08 Undo redo implementation
2064         saveState();
2065         //JCP 20-10-08 Undo redo implementation
2066
2067         wxBusyCursor wait;
2068         int                                     x                                       = _theViewPanel->GetX();
2069         int                                     y                                       = _theViewPanel->GetY();
2070         int z;
2071         double porcent;
2072         wxString tmpString;
2073         double totalZ = maxZ-minZ+1;
2074         for( z=minZ ; z<=maxZ ; z++ )
2075         {
2076                 porcent = 100.0* (z-minZ)/totalZ;
2077                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2078                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2079                 //_staticTextSegmentation->SetLabel(tmpString);
2080                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2081         }
2082         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
2083         RefreshInterface();
2084 }
2085
2086
2087 //Creates a reference line to be used as the axis of the mirroring
2088 void wxContourMainFrame::referenceLine()
2089 {
2090         if (_refLineControl==NULL)
2091         {
2092                 wxBusyCursor wait;
2093                 double spc[3];
2094
2095                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2096                 vtkimagedata->GetSpacing(spc);
2097
2098                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2099
2100                 _refLineControl = new manualLineControler();
2101                 _refLineModel   = new manualContourModelLine();
2102                 _refLineView = new manualViewLine();
2103                 _refLineView->SetModel( _refLineModel );
2104                 _refLineView->SetWxVtkBaseView( viewer2D );
2105                 _refLineView->SetRange( 2 );
2106                 _refLineView->SetZ( 1200 );
2107
2108                 _refLineView->SetSpacing(spc);
2109
2110                 _refLineView->SetColorNormalContour(0, 0, 1);
2111                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2112                 _refLineView->SetWidthLine(4);
2113
2114                 _refLineControl->SetModelView( _refLineModel , _refLineView );
2115                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2116                 style->AddInteractorStyleMaracas( _refLineControl );
2117                 _refLineModel->SetCloseContour(false);
2118                 _refLineControl->CreateNewManualContour();
2119
2120 //AD: Inicializar el mirroring con una linea ya pintada
2121         /*
2122                 double z = _refLineControl->GetZ();
2123
2124                 int imageDim[3];
2125                 image->GetDimensions(imageDim);
2126                 double x = (double) imageDim[0]/2;
2127                 double y1 = (double) (imageDim[1]/2)+15;
2128                 double y2 = (double) (imageDim[1]/2)-15;
2129
2130                 _refLineControl->AddPoint(x,y1,z);
2131                 _refLineControl->AddPoint(x,y2,z);
2132                 _refLineControl->SetCompleteCreation(true);
2133
2134                 _refLineModel->AddPoint(x,y1,z);
2135                 _refLineModel->AddPoint(x,y2,z);
2136                 _refLineModel->UpdateSpline();
2137
2138                 _refLineView->UpdateViewPoint(0);
2139                 _refLineView->UpdateViewPoint(1);
2140         */
2141
2142                 _refLineControl->SetActive(true);
2143                 _refLineView->RefreshContour();
2144         }
2145 }
2146
2147 //Hides the referenceLine
2148 void wxContourMainFrame::refLineHide()
2149 {
2150         if (_refLineControl!=NULL)
2151         {
2152                 if (_refLineControl->GetActive())
2153                 {
2154                         _refLineView->RemoveCompleteContourActor();
2155                         _refLineControl->SetEditable(false);
2156                         _refLineControl->SetActive(false);
2157
2158                         RefreshInterface();
2159                 }
2160         }
2161 }
2162
2163 //Shows the referenceLine
2164 void wxContourMainFrame::refLineShow()
2165 {
2166         if (_refLineControl!=NULL)
2167         {
2168                 if (_refLineControl->GetActive()==false)
2169                 {
2170                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2171
2172                         _refLineView->SetModel( _refLineModel );
2173                         _refLineView->SetWxVtkBaseView( viewer2D );
2174                         _refLineView->SetRange( 2 );
2175                         _refLineView->SetZ( 1200 );
2176
2177                         _refLineControl->SetModelView( _refLineModel , _refLineView );
2178                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2179                         style->AddInteractorStyleMaracas( _refLineControl );
2180                         _refLineControl->CreateNewManualContour();
2181                         _refLineControl->SetActive(true);
2182                         _refLineView->RefreshContour();
2183
2184                         RefreshInterface();
2185                 }
2186         }
2187 }
2188
2189 void wxContourMainFrame::refLineChangeWidth(int width)
2190 {
2191         _refLineView->SetWidthLine(width);
2192         _refLineView->RefreshContour();
2193
2194         RefreshInterface();
2195 }
2196
2197
2198 void wxContourMainFrame::onMirror()
2199 {
2200         //AD:02-09
2201         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2202         std::vector<std::string> filterCurrentSelection;
2203
2204         std::vector<int> tempVector;
2205         _instantPanel->getInstant( tempVector );
2206     _performingOperation->reset();
2207         _performingOperation->setStartCommand( COPY );
2208         _performingOperation->setStartOperationInstantVector( tempVector );
2209         _performingOperation->setKeyNamesOperationElems( currentSelection );
2210
2211         char theStartCommand = _performingOperation->getStartCommand();
2212         if (  theStartCommand == COPY )
2213         {
2214                 //JCP 20-10-08 Undo redo implementation
2215                 saveState();
2216                 //JCP 20-10-08 Undo redo implementation
2217                 std::vector<int> tempVector;
2218                 _instantPanel->getInstant( tempVector );
2219                 _performingOperation->setEndOperationInstantVector ( tempVector );
2220                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2221                 int i,size = elems.size();
2222                 for( i=0; i<size; i++ )
2223                 {
2224                         createMirrorContourOf( elems[i], tempVector, i>0 );
2225                 }
2226         }
2227
2228         //deleteContour( _refName );
2229         //_refName = "";
2230 }
2231
2232
2233 void wxContourMainFrame::showAxis(bool show)
2234 {
2235         _theViewPanel->SetVisibleAxis(show);
2236         _theViewPanel->Refresh();
2237 }
2238
2239
2240 void wxContourMainFrame::onRigidPressed(){
2241         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2242         int elementsSelected = currentSelection.size();
2243
2244         if ( elementsSelected >= 1 ){
2245                 //JCP 20-10-08 Undo redo implementation
2246                 saveState();
2247                 //JCP 20-10-08 Undo redo implementation
2248
2249                 std::vector<int> tempVector;
2250                 _instantPanel->getInstant( tempVector );
2251                 Instant instant(&tempVector);
2252
2253                 int i , size=currentSelection.size();
2254                 for ( i=0 ; i<size ; i++ )
2255                 {
2256                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2257                 } // i
2258         }
2259 }
2260
2261 void wxContourMainFrame::onWidthOfContour(double width){
2262
2263         _theViewPanel->removeSceneContours();
2264         _theViewPanel->SetWidthContour(width);
2265
2266         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2267
2268         RefreshInterface();
2269 }
2270
2271 int wxContourMainFrame::getColorWindow()
2272 {
2273         /*
2274         double range[2];
2275         vtkImageData * img = getImageData();
2276         img->GetScalarRange(range);
2277
2278         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2279
2280         return (int)range[1];
2281         */
2282         return _theViewPanel->getColorWindow();
2283 }
2284
2285 int wxContourMainFrame::getWindowLevel()
2286 {
2287         /*
2288         double range[2];
2289         vtkImageData * img = getImageData();
2290         img->GetScalarRange(range);
2291
2292         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2293
2294         return (int)range[1];
2295         */
2296         return _theViewPanel->getWindowLevel();
2297 }
2298
2299 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
2300         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2301
2302         RefreshInterface();
2303 }
2304
2305 void wxContourMainFrame::onInterpolation(bool interpolate){
2306         _theViewPanel->onInterpolation(interpolate);
2307         RefreshInterface();
2308 }
2309
2310 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
2311         _instantPanel->setConceptValue( name, actual );
2312 }
2313
2314
2315 void wxContourMainFrame::resetAppend(){
2316         kernelManager->resetAppend();
2317
2318 }
2319
2320
2321 void wxContourMainFrame::onSpreadAdd(){
2322         std::vector<double> vecX;
2323         std::vector<double> vecY;
2324         std::vector<double> vecZ;
2325         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2326         std::vector<int> tempVector;
2327         _instantPanel->getInstant( tempVector );
2328         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2329         interfMainPanel::getInstance()->appendStringSpread(val);
2330 }
2331
2332
2333 void wxContourMainFrame::onSpreadAddAll(){
2334 //EED02
2335         std::vector<int> tempVector;
2336         _instantPanel->getInstant( tempVector );
2337         int minZ,maxZ;
2338     minZ        = 0;
2339     maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2340         int z;
2341         int sizeLstContourThings;
2342         for ( z=minZ ; z<=maxZ ; z++ )
2343         {
2344                 tempVector[1]=z;
2345                 Instant instant(&tempVector);
2346                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2347                 sizeLstContourThings = lstContourThings.size();
2348                 if (sizeLstContourThings>=1)
2349         {
2350             std::vector<double> vecX;
2351             std::vector<double> vecY;
2352             std::vector<double> vecZ;
2353             ContourThing **contourthing = lstContourThings[0];
2354                         manualBaseModel *cModel                         =  (*contourthing)->getModel();
2355                         int i,size = cModel->GetNumberOfPointsSpline();
2356                         double x,y,z;
2357                         for (i=0; i<size; i++)
2358                         {
2359                                 cModel->GetSpline_i_Point(i, &x, &y, &z);
2360                                 vecX.push_back(x);
2361                                 vecY.push_back(y);
2362                                 vecZ.push_back(z);
2363                         } // for i
2364             std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2365             interfMainPanel::getInstance()->appendStringSpread(val);
2366         }// if sizeLstContourThings
2367     } // for z
2368 }
2369
2370
2371 void wxContourMainFrame::onSpreadGo(int type){
2372         //JCP 20-10-08 Undo redo implementation
2373         saveState();
2374         //JCP 20-10-08 Undo redo implementation
2375         wxBusyCursor wait;
2376         std::vector<double> vecCtrlPointX;
2377         std::vector<double> vecCtrlPointY;
2378         std::vector<double> vecCtrlPointZ;
2379         double  minZ,maxZ;
2380         int z;
2381
2382         std::vector<int> tempVector;
2383         _instantPanel->getInstant( tempVector );
2384 //              tempVector[1];
2385
2386         kernelManager->getMaxMinZ(&minZ,&maxZ);
2387 //JSTG_16-07-08_----------------------------------------------------------------
2388         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2389         kernelManager->CalculeSplinePropagation();
2390
2391         double          totalZ = maxZ-minZ+1;
2392         double          porcent;
2393         wxString        tmpString;
2394 //--------------------------------------------------------------------
2395         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2396         {
2397                 porcent = 100.0* (z-minZ)/totalZ;
2398                 int numero = (int)(z-minZ+1)/(int)totalZ;
2399                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2400
2401                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2402
2403                 int typeofcontour = 1;
2404                 std::string theName;
2405                 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2406
2407                 if( manModelContour!=NULL ){
2408                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2409                         this->_theViewPanel->getSpacing(spc);
2410                         //Adding the manualContourControler to interface objects structure
2411                         //Adding the manualViewContour to interface objects structure
2412                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2413                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2414                 } // if addedModel
2415         }
2416         if(z > maxZ){
2417                 porcent = 100.0;
2418                 int numero = (int)(z-minZ+1)/(int)totalZ;
2419                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2420
2421                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2422         }// for z
2423         //RefreshInterface();
2424 }
2425
2426 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2427
2428 }
2429
2430 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2431         std::vector<int> tempVector;
2432         _instantPanel->getInstant(tempVector);
2433         //Asignation of slide number should be different ex by name
2434         tempVector[1]=slide;
2435         return kernelManager->getOutlinesNameAtInstant(tempVector);
2436 }
2437
2438
2439 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2440 {
2441         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2442 }
2443
2444
2445 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2446 {
2447 //EED01Juillet2009      GenerateContourExtractData();
2448
2449         wxString tempString;
2450         int maxContourGroup     =       0;
2451
2452         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2453
2454         std::vector<manualBaseModel*> lstManConMod;
2455         std::vector<manualBaseModel*> lstManConModTmp;
2456         std::vector<manualBaseModel*> lstManConModExp;
2457         std::vector<double> pLstValue;
2458         std::vector<double> pLstValuePosX;
2459         std::vector<double> pLstValuePosY;
2460         std::vector<double> pLstValuePosZ;
2461
2462         int             resultSize;
2463         int             resultGrayRangeCount;
2464         double  resultMin;
2465         double  resultMax;
2466         double  resultAverage;
2467         double  resultStandardeviation;
2468
2469         std::vector<int> tempVector;
2470         _instantPanel->getInstant( tempVector );
2471
2472 //EED01Juillet2009      vtkImageData *imagedata = _theViewPanel->getImageData();
2473 //      int sizeZ = _theViewPanel->GetImageDataSizeZ();
2474         int z;
2475         int ii,sizeLstContourThings;
2476
2477
2478         int minZ,maxZ;
2479         double totalZ;
2480         double porcent;
2481         wxString tmpString;
2482
2483
2484         if (selection==0 ) // actual slice
2485         {
2486                 int actualSlice = tempVector[1];
2487                 minZ    = actualSlice;
2488                 maxZ    = actualSlice;
2489         }       else  {  // slice range
2490                 minZ    = minimumZ;
2491                 maxZ    = maximumZ;
2492         }
2493
2494
2495         totalZ  = maxZ-minZ+1;
2496 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2497
2498         _contourextractdata->InitVolumeStatistics();
2499
2500 // For each slice..
2501         for ( z=minZ ; z<=maxZ ; z++ )
2502         {
2503
2504                 porcent = 100.0* (z-minZ)/totalZ;
2505                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2506
2507                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2508                 //_staticTextInformation->SetLabel(tmpString);
2509
2510                 //Extraction data from contours of each slice
2511                 _contourextractdata->SetZtoBeAnalys(z);
2512
2513                 tempVector[1]=z;
2514                 Instant instant(&tempVector);
2515                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2516                 sizeLstContourThings = lstContourThings.size();
2517
2518                 lstManConMod.clear();
2519                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2520                 {
2521                         ContourThing **contourthing = lstContourThings[ii];
2522                         lstManConMod.push_back( (*contourthing)->getModel() );
2523                 }
2524
2525                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2526
2527                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2528                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2529                 //_grid->SetRowLabelValue(z, tempString );
2530 //EED004
2531                 int iContourGroup,sizeContourGroup;
2532                 if (typeContourGroup==3) // contour separete
2533                 {
2534                         sizeContourGroup=lstManConModExp.size();
2535                         if ( maxContourGroup<sizeContourGroup )
2536                         {
2537                                 maxContourGroup=sizeContourGroup;
2538                         }
2539                 } else {  // contour AND OR XOR
2540                         sizeContourGroup=1;
2541                         maxContourGroup=1;
2542                 }
2543
2544                 int tmpIntA;
2545
2546                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2547                         lstManConModTmp.clear();
2548
2549
2550
2551                         if (typeContourGroup==3) // contour separete
2552                         {
2553                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2554                         } else {  // contour AND OR XOR
2555                                 lstManConModTmp = lstManConModExp;
2556                         }
2557
2558                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2559                         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2560
2561                         pLstValue.clear();
2562                         pLstValuePosX.clear();
2563                         pLstValuePosY.clear();
2564                         pLstValuePosZ.clear();
2565
2566
2567                         int numberOfPixels;
2568                         _contourextractdata->GetValuesInsideCrown(  &numberOfPixels,
2569                                                                                                                 &pLstValue,
2570                                                                                                                 &pLstValuePosX,
2571                                                                                                                 &pLstValuePosY,
2572                                                                                                                 &pLstValuePosZ);
2573
2574                         resultSize=numberOfPixels;
2575                         // Statistics of each slice.
2576                         _contourextractdata->Statistics( &pLstValue,
2577                                                                                         grayRangeMin,
2578                                                                                         grayRangeMax,
2579                                                                                         &resultGrayRangeCount,
2580                                                                                         &resultSize,
2581                                                                                         &resultMin,
2582                                                                                         &resultMax,
2583                                                                                         &resultAverage,
2584                                                                                         &resultStandardeviation);
2585
2586                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2587                         {
2588                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2589                         }
2590
2591                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2592
2593                         tempString.Printf(_T("%d"),numberOfPixels);
2594
2595                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2596
2597                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2598                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2599
2600                         tempString.Printf(_T("%f"),resultMin);
2601                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2602
2603                         tempString.Printf(_T("%f"),resultMax);
2604                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2605
2606                         tempString.Printf(_T("%f"),resultAverage);
2607                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2608
2609                         tempString.Printf(_T("%f"),resultStandardeviation);
2610                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2611
2612
2613                 } // for iContourGroup
2614         } // for z
2615
2616         // Print Volume Statistics
2617
2618
2619         int             vol_rCountRange;
2620         int             vol_rsize;
2621         double  vol_minValue;
2622         double  vol_maxValue;
2623         double  vol_average;
2624         double  vol_standardeviation;
2625
2626         if (selection!=0 ) // actual slice
2627         {
2628
2629                 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2630                                                                                                  &vol_minValue, &vol_maxValue,
2631                                                                                                  &vol_average, &vol_standardeviation);
2632
2633                 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2634
2635                 tempString.Printf(_T("%d"),vol_rsize);
2636                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2637
2638                 tempString.Printf(_T("%d"),vol_rCountRange);
2639                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2640
2641                 tempString.Printf(_T("%f"),vol_minValue);
2642                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2643
2644                 tempString.Printf(_T("%f"),vol_maxValue);
2645                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2646
2647                 tempString.Printf(_T("%f"),vol_average);
2648                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2649
2650                 tempString.Printf(_T("%f"),vol_standardeviation);
2651                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2652         }
2653         //-----------------------------------------
2654
2655         int iTitleGroup;
2656         wxString tmpTitleString;
2657         int tmpIntB;
2658         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2659         {
2660                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2661                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2662                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2663
2664                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2665                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2666                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2667                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2668                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2669                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2670                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2671         }// for title
2672         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2673 }
2674
2675 //AD: 29-05-09
2676 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2677         int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2678 {
2679         if (XYZValues)
2680         {
2681                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2682         }
2683
2684         if (contourImage)
2685         {
2686                 vtkImageData * mask;
2687                 vtkImageData * value;
2688                 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2689                 this->SaveImageResult( directory , namefile, mask, value);
2690         }
2691
2692         if (statistics)
2693         {
2694                 std::ostringstream name;
2695                 name << filename << ".xls";
2696
2697
2698                 FILE *pFile=fopen(name.str().c_str(),"w+");
2699
2700
2701                 wxString tmpString;
2702                 int i,j,maxX;
2703
2704 //              int sizeZ = _theViewPanel->GetImageDataSizeZ();
2705 //              int maxY=sizeZ+2;
2706
2707                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2708
2709                 // -- Title --
2710                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2711                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2712                 {
2713                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2714                                 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2715                 }
2716                 fprintf(pFile,"\n\n" );
2717
2718
2719
2720                 if (selection==0 ) // actual slice
2721                 {
2722                         std::vector<int> tempVector;
2723                         _instantPanel->getInstant( tempVector );
2724                         int actualSlice = tempVector[1];
2725                         minZ    = actualSlice;
2726                         maxZ    = actualSlice;
2727                 }
2728
2729                 // Stadistics...
2730                 for ( j=minZ; j<=maxZ ; j++)
2731                 {
2732                         fprintf(pFile,"%d\t" , j );
2733                         for (i=0 ; i<maxX ; i++){
2734                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2735                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2736                         } // for i
2737                         fprintf(pFile,"\n"  );
2738                 } // for j
2739
2740
2741                 // Total of stadistics.....
2742                 if (selection!=0)
2743                 {
2744                         fprintf(pFile,"\n Total:\t"  );
2745                         for (i=0 ; i<maxX ; i++){
2746                                 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2747                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2748                         } // for i
2749                         fprintf(pFile,"\n"  );
2750                 }
2751
2752                 fclose(pFile);
2753         }
2754 }
2755
2756 //AD: 29-05-09
2757 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2758 {
2759         wxBusyCursor wait;
2760 //EED01Juillet2009      GenerateContourExtractData();
2761
2762         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2763         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2764
2765         std::vector<manualBaseModel*> lstManConMod;
2766         std::vector<manualBaseModel*> lstManConModTmp;
2767         std::vector<manualBaseModel*> lstManConModExp;
2768         std::vector<double> pLstValue;
2769         std::vector<double> pLstValuePosX;
2770         std::vector<double> pLstValuePosY;
2771         std::vector<double> pLstValuePosZ;
2772
2773         std::vector<int> tempVector;
2774         _instantPanel->getInstant( tempVector );
2775
2776 //EED01Juillet2009      vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2777         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2778         int z;
2779         int ii,sizeLstContourThings;
2780
2781
2782         int minZ,maxZ;
2783         double totalZ;
2784         double porcent;
2785         wxString tmpString;
2786         minZ    = 0;// _mbarrange->GetStart();
2787         maxZ    = sizeZ;//_mbarrange->GetEnd();
2788         totalZ  = maxZ-minZ+1;
2789
2790 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2791
2792 // For each slice..
2793         for ( z=0 ; z<sizeZ ; z++)
2794         {
2795
2796                 porcent = 100.0* (z-minZ)/totalZ;
2797
2798                 tmpString.Printf(_T("Saving Values"));
2799                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2800                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2801                 //_staticTextInformation->SetLabel(tmpString);
2802
2803
2804                 //Extraction data from contours of each slice
2805                 _contourextractdata->SetZtoBeAnalys( z);
2806
2807                 tempVector[1]=z;
2808                 Instant instant(&tempVector);
2809                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2810                 sizeLstContourThings = lstContourThings.size();
2811
2812                 lstManConMod.clear();
2813                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2814                 {
2815                         ContourThing **contourthing = lstContourThings[ii];
2816                         lstManConMod.push_back( (*contourthing)->getModel() );
2817                 }
2818                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2819
2820
2821 //EED004
2822
2823                 int iContourGroup,sizeContourGroup;
2824                 if (typeContourGroup==3) // contour separete
2825                 {
2826                         sizeContourGroup=lstManConModExp.size();
2827                 } else {  // contour AND OR XOR
2828                         sizeContourGroup=1;
2829                 }
2830
2831                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2832                         lstManConModTmp.clear();
2833                         if (typeContourGroup==3) // contour separete
2834                         {
2835                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2836                         } else {  // contour AND OR XOR
2837                                 lstManConModTmp = lstManConModExp;
2838                         }
2839
2840                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2841
2842                         pLstValue.clear();
2843                         pLstValuePosX.clear();
2844                         pLstValuePosY.clear();
2845                         pLstValuePosZ.clear();
2846                         int numberOfPixels;
2847                         _contourextractdata->GetValuesInsideCrown(      &numberOfPixels,
2848                                                                                                                 &pLstValue,
2849                                                                                                                 &pLstValuePosX,
2850                                                                                                                 &pLstValuePosY,
2851                                                                                                                 &pLstValuePosZ);
2852
2853                         std::string temp = directory + "/" + namefile + "-slice";
2854                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2855                         temp = temp + ".txt";
2856
2857                         // LG 14/01/09 : using crea
2858                         wxString filename = crea::std2wx(temp);
2859                         /*filename.Printf(_T("%s"),directory.c_str());
2860                         filename.append(_T("\\"));
2861                         filename.append(_T("%s"),namefile.c_str());
2862                         filename.append(_T("-slice"));
2863                         filename.append(_T("%d"),z);
2864                         filename.append(_T("-cont"));
2865                         filename.append(_T("%d"),iContourGroup);
2866                         filename.append(_T(".txt"));*/
2867                         //                      filename.Printf(temp.c_str());
2868
2869
2870
2871                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2872                         fprintf(pFile,"value \t x \t y \t z\n"  );
2873                         int iLstValue,sizeLstValue=pLstValue.size();
2874                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2875                         {
2876                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2877                         }
2878                         fclose(pFile);
2879                 } // for  iContourGroup
2880         } // for z
2881         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2882         //_staticTextInformation->SetLabel( _T("") );
2883
2884 }
2885
2886 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2887         wxBusyCursor wait;
2888 //EED01Juillet2009      GenerateContourExtractData();
2889
2890         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2891         if (typeContourGroup==3)
2892         {
2893                 typeContourGroup=1;
2894         }
2895         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2896
2897         std::vector<manualBaseModel*> lstManConMod;
2898         std::vector<manualBaseModel*> lstManConModTmp;
2899         std::vector<manualBaseModel*> lstManConModExp;
2900
2901         std::vector<int> tempVector;
2902         _instantPanel->getInstant( tempVector );
2903
2904     vtkImageData *imagedata = _theViewPanel->getImageData();
2905         int ext[6];
2906         imagedata->GetExtent(ext);
2907         int sizeZimage = ext[5]-ext[4]+1;
2908         int z;
2909         int ii,sizeLstContourThings;
2910
2911
2912         double totalZ;
2913         double porcent;
2914
2915         wxString tmpString;
2916
2917
2918         if (selection==0 ) // actual slice
2919         {
2920                 int actualSlice = tempVector[1];
2921                 minZ    = actualSlice;
2922                 maxZ    = actualSlice;
2923         }
2924
2925         totalZ  = maxZ-minZ;
2926
2927 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2928
2929         // cleanning image before range
2930         for (z=0; z<minZ; z++){
2931                 _contourextractdata->ResetImageResult(z);
2932         }
2933         // cleanning image after range
2934         for (z=maxZ+1; z<sizeZimage; z++){
2935                 _contourextractdata->ResetImageResult(z);
2936         }
2937
2938
2939 // For each slice..
2940         for ( z=minZ ; z<=maxZ ; z++)
2941         {
2942
2943                 porcent = 100.0* (z-minZ)/totalZ;
2944                 tmpString.Printf(_T("Saving Values"));
2945                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2946                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2947
2948                 //Extraction data from contours of each slice
2949                 _contourextractdata->SetZtoBeAnalys( z);
2950
2951                 tempVector[1]=z;
2952                 Instant instant(&tempVector);
2953                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2954                 sizeLstContourThings = lstContourThings.size();
2955
2956                 lstManConMod.clear();
2957                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2958                 {
2959                         ContourThing **contourthing = lstContourThings[ii];
2960                         lstManConMod.push_back( (*contourthing)->getModel() );
2961                 }
2962                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2963
2964
2965                 int iContourGroup,sizeContourGroup;
2966                 if (typeContourGroup==3) // contour separete
2967                 {
2968                         sizeContourGroup=lstManConModExp.size();
2969                 } else {  // contour AND OR XOR
2970                         sizeContourGroup=1;
2971                 }
2972
2973                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2974                         lstManConModTmp.clear();
2975                         if (typeContourGroup==3) // contour separete
2976                         {
2977                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2978                         } else {  // contour AND OR XOR
2979                                 lstManConModTmp = lstManConModExp;
2980                         }
2981
2982                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2983                         _contourextractdata->CalculateImageResult(); // with actual Z
2984
2985                 } // for  iContourGroup
2986         } // for z
2987
2988         (*value) = _contourextractdata->GetVtkImageValueResult();
2989         (*mask)  = _contourextractdata->GetVtkImageMaskResult();
2990
2991 }
2992
2993 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2994 {
2995
2996         double spc[3];
2997         kernelManager->GetSpacing(spc,0);   // returns the spacing of the first image
2998
2999         std::string temp = directory + "/" + namefile + "-image-Value.mhd";
3000
3001         wxString filename = crea::std2wx(temp);
3002
3003 // Image Value
3004
3005         vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
3006         valueChInfo->SetInput(value);
3007         valueChInfo->SetSpacingScale(spc);
3008         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
3009         writerValueImage->SetInput( valueChInfo->GetOutput() );
3010         writerValueImage->SetFileName( (const char *)filename.mb_str() );
3011         writerValueImage->SetFileDimensionality( 3 );
3012         writerValueImage->SetCompression(false);
3013         writerValueImage->Write( );
3014
3015 // Image Mask
3016         temp = directory + "/" + namefile + "-image-Mask.mhd";
3017
3018         // LG 14/01/09 : using crea
3019         filename = crea::std2wx(temp);
3020         //      filename.Printf(_T(temp.c_str()));
3021
3022
3023         vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
3024         maskChInfo->SetInput(mask);
3025         maskChInfo->SetSpacingScale(spc);
3026         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
3027         writerMaskImage->SetInput( maskChInfo->GetOutput() );
3028         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
3029         writerMaskImage->SetFileDimensionality( 3 );
3030         writerMaskImage->SetCompression(false);
3031         writerMaskImage->Write( );
3032
3033         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
3034
3035 }
3036
3037
3038
3039 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
3040         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
3041                 _theViewPanel->setActualVertical( value);
3042         }
3043         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
3044                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
3045         }
3046
3047         changeInstant();
3048 }
3049
3050 void wxContourMainFrame::onSnakePressed(){
3051         std::vector<double> vecX;
3052         std::vector<double> vecY;
3053         std::vector<double> vecZ;
3054         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
3055
3056         if (vecX.size()!=0){
3057                 std::vector<int> tempVector;
3058                 _instantPanel->getInstant( tempVector );
3059                 int i,size=vecZ.size();
3060                 int actualSlice = tempVector[1];
3061                 for ( i=0 ; i<size ; i++ )
3062                 {
3063                         vecZ[i] = actualSlice;
3064                 } // for
3065
3066                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
3067                 wxPanel* panel = new wxPanel(dialog,-1);
3068                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3069          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3070                 dialog->ShowModal();
3071         } // if
3072
3073 }
3074
3075 void wxContourMainFrame::saveFileWithContoursAutomatique(){
3076         std::string filename = kernelManager->getCurrentFileName();
3077         if(filename.compare("")!=0){
3078                 saveFileWithContours(filename);
3079         }else{
3080                 onSave();
3081         }
3082 }
3083 void wxContourMainFrame::ShowToolsPanel(bool show){
3084         _pannew->Show(show);
3085 }
3086
3087
3088
3089 void wxContourMainFrame::SetContourGroup(int contourGroup)
3090 {
3091         _contourGroup = contourGroup;
3092 }
3093
3094
3095 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3096 {
3097
3098         if      (_viewMaskImagePanel==NULL)
3099         {
3100                 _contourextractdata = new ContourExtractData(true);
3101                 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3102 //              double range[2];
3103 //              _theViewPanel->getImageData()->GetScalarRange(range);
3104                 //int min = (int)floor (range[0]);
3105                 //int max = (int)ceil (range[1]);
3106                 int min = 254;
3107                 int max = 256;
3108                 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , 0);
3109                 _viewMaskImage = new ThresholdImageView();
3110                 _viewMaskImage->SetImage(_contourextractdata->GetVtkImageMaskResult() );
3111                 _viewMaskImage->SetminMaxValue( min, max);
3112                 _viewMaskImage->SetBaseColor( 0,0,1 );
3113                 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3114                 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3115         }
3116         return _viewMaskImagePanel;
3117 }
3118
3119
3120 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3121 {
3122         if      (_viewColorLayerImagePanel==NULL)
3123         {
3124                 double range[2];
3125                 _theViewPanel->getImageData()->GetScalarRange(range);
3126                 int min = (int)floor (range[0]);
3127                 int max = (int)ceil (range[1]);
3128                 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max , 1);
3129                 _viewColorLayerImage = new ColorLayerImageView();
3130 //              _viewColorLayerImage->SetImage( _theViewPanel->getImageData() );
3131                 _viewColorLayerImage->SetImage( NULL );
3132                 _viewColorLayerImagePanel->SetColorLayerImageView( _viewColorLayerImage );
3133                 _viewColorLayerImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3134         }
3135         return _viewColorLayerImagePanel;
3136 }
3137
3138
3139 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3140 {
3141         if      (_viewThresholdImagePanel==NULL)
3142         {
3143                 double range[2];
3144                 _theViewPanel->getImageData()->GetScalarRange(range);
3145                 int min = (int)floor (range[0]);
3146                 int max = (int)ceil (range[1]);
3147                 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max , 1);
3148                 _viewThresholdImage = new ThresholdImageView();
3149                 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3150                 _viewThresholdImage->SetminMaxValue( min, max);
3151                 _viewThresholdImage->SetBaseColor( 1,0,0 );
3152                 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3153                 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3154         }
3155         return _viewThresholdImagePanel;
3156 }
3157
3158 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3159 int wxContourMainFrame::getType ()
3160 {
3161         int tipo = 0;
3162         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3163
3164         if(!currentSelection.empty())
3165         {
3166                 std::string cloneName = currentSelection [0];
3167                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3168                 tipo = manualModel-> GetTypeModel();
3169         }
3170         return tipo;
3171 }
3172
3173 double wxContourMainFrame::getContourSizeInPixels()
3174 {
3175         double contourSize = 0;
3176
3177         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();        if(!currentSelection.empty())
3178         if(!currentSelection.empty())
3179         {
3180                 std::string cloneName = currentSelection [0];
3181
3182                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3183                 contourSize = manualModel-> GetPathSize();
3184         }
3185         return contourSize;
3186 }
3187 manualBaseModel * wxContourMainFrame::getContour ()
3188 {
3189         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3190
3191         if(!currentSelection.empty())
3192         {
3193                 std::string cloneName = currentSelection [0];
3194                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3195                 return manualModel;
3196         }
3197         return NULL;
3198 }
3199 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3200 {
3201         std::string labelAscii(label.ToAscii());
3202         int pos = labelAscii.find(" ");
3203
3204         int j;
3205
3206         for (j=0 ; pos != string::npos;j++)
3207         {
3208                 labelAscii.replace( pos, 1, "_" );
3209                 pos= labelAscii.find(" ");
3210         }
3211
3212         manualModel -> SetLabel(labelAscii);
3213 }
3214 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3215 {
3216         double sizeInPixel = manualModel ->GetPathSize();
3217         double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3218         double realContourSize = sizeInPixel*onePixelRealSize;
3219         manualModel ->SetRealSize(realContourSize);
3220 }
3221
3222 double wxContourMainFrame::onePixelSize( double value)
3223 {
3224         return _onePixelSize = value;
3225 }
3226
3227 std::string wxContourMainFrame::GetFileLocation()
3228 {
3229         return _fileLocation;
3230 }
3231
3232 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3233 {
3234         _fileLocation = newFileLocation;
3235         std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3236 }
3237 //------------------------------------------------------------------------------------------------------------