lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 //----------------------------------------------------------------------------------------------------------------
   2 // Class definition include
   3 //----------------------------------------------------------------------------------------------------------------
   4 #include "wxContourMainFrame.h"
   5
   6
   7
   8 //----------------------------------------------------------------------------------------------------------------
   9 // Includes
  10 //----------------------------------------------------------------------------------------------------------------
  11
  12
  13 #include "NameWrapper.h"
  14 #include "wx/artprov.h"
  15 #include "ConceptDataWrap.h"
  16 #include <creaWx.h>
  17
  18 #include <string>
  19 using namespace std;
  20
  21 //----------------------------------------------------------------------------------------------------------------
  22 // Class implementation
  23 //----------------------------------------------------------------------------------------------------------------
  24 /** @file wxContourMainFrame.cxx */
  25
  26         //------------------------------------------------------------------------------------------------------------
  27         // Constructors & Destructors
  28         //------------------------------------------------------------------------------------------------------------
  29
  30 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
  31 char wxContourMainFrame::COPY = 'C';
  32
  33         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  34                 //: wxPanel(parent, id, title, pos, size, style)
  35                 //: wxWindow(parent, id, pos, size, style)
  36                 : wxPanel(parent, id, pos, size, style)
  37         {
  38                 m_mgr.SetManagedWindow(this);
  39                 _contourGroup                           = 1;
  40                 _creatingContoursActive         = false;
  41                 _theViewPanel                           = NULL;
  42 //              _modelManager                           = NULL;
  43                 _instantPanel                           = NULL;
  44 //              _buttonsBar                                     = NULL;
  45 //              _gridPanel                                      = NULL;
  46 //              _drawToolsPanel                         = NULL;
  47 //              _operationsToolsPanel           = NULL;
  48                 //_autoFormsPanel                               = NULL;
  49 //              _standardToolsPanel                     = NULL;
  50 //              _editionToolsPanel                      = NULL;
  51 //              _listViewPanel                          = NULL;
  52 //              _sceneManager                           = NULL;
  53                 //_actualInstant                                = NULL;
  54                 _numberOfVariablesStatistics = 6+1;
  55
  56                 _refLineControl                         = NULL;
  57                 _refLineModel                           = NULL;
  58                 _refLineView                            = NULL;
  59 //              _actorPresent                           = false;
  60
  61                 // set up default notebook style
  62 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  63 //              m_notebook_theme = 0;
  64                 //wxContour_ActionCommandsID a;
  65
  66                 _contourextractdata                     = NULL;
  67                 _viewMaskImage                          = NULL;
  68                 _viewMaskImagePanel                     = NULL;
  69                 _viewThresholdImage                     = NULL;
  70                 _viewThresholdImagePanel        = NULL;
  71
  72         }
  73
  74         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
  75                 : wxPanel(parent, id, pos, size, style)
  76         {
  77                 m_mgr.SetManagedWindow(this);
  78                 _contourGroup                           = 1;
  79                 _creatingContoursActive         = false;
  80                 _theViewPanel                           = NULL;
  81
  82                 _instantPanel                           = NULL;
  83                 _refLineControl                         = NULL;
  84                 _refLineModel                           = NULL;
  85                 _refLineView                            = NULL;
  86 //              _actorPresent                           = false;
  87                 _viewMaskImage                          = NULL;
  88                 _viewMaskImagePanel                     = NULL;
  89                 _viewThresholdImage                     = NULL;
  90                 _viewThresholdImagePanel        = NULL;
  91
  92                 // set up default notebook style
  93                 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  94                 m_notebook_theme = 0;
  95                 //wxContour_ActionCommandsID a;
  96                 _numberOfVariablesStatistics = 7;
  97
  98                 _datadir = datadir;
  99
 100
 101                 inredo = 0;
 102                 inundo = 0;
 103
 104                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
 105                 _performingOperation = new PerformingOperation();
 106
 107                 if(images.size() > 0)
 108                 {
 109                         this->setVectImages(images);
 110                 }
 111
 112                 _contourextractdata                     = NULL;
 113 }
 114
 115 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 116 {
 117
 118         _images = imgs;
 119
 120         #if defined(__GNUC__)
 121                 std::string str_home(getenv("HOME"));
 122         #elif defined(_WIN32)
 123                         std::string str_home(getenv("USERPROFILE"));
 124         #endif
 125                 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 126
 127         std::vector<std::string> conceptNameVect;
 128         std::vector<int> conceptSizeVect;
 129
 130         notebook = this->createNotebook();
 131
 132
 133         kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 134
 135
 136         _instantPanel                           = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 137         _theViewPanel                           = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 138
 139 //-------------------------------------------------------------
 140         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 141         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 142
 143
 144         double val = _theViewPanel->getCurrentDeep();
 145         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 146         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 147         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 148         //*******************changeInstant();
 149         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 150
 151         this->configurePanels( );
 152
 153 }
 154
 155
 156         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
 157                 if(instance == NULL){
 158                         instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 159                 }
 160                 return instance;
 161         }
 162
 163         std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
 164         {
 165                 return kernelManager->getVectImages();
 166         }
 167
 168         wxContourMainFrame* wxContourMainFrame :: getInstance()
 169         {
 170                 return instance;
 171         }
 172
 173         void wxContourMainFrame :: resetInstance()
 174         {
 175                 instance->Destroy();
 176         }
 177
 178         wxContourMainFrame :: ~wxContourMainFrame()
 179         {
 180                 delete _contourextractdata;
 181                 deleteAllContours();
 182                 _pannew->Close();
 183                 interfMainPanel::resetInstance();
 184                 delete kernelManager;
 185                 instance = NULL;
 186                 //_pannew->Destroy();
 187                 //delete _pannew;
 188
 189                 m_mgr.UnInit();
 190                 //delete m_mgr;
 191
 192                 //El problema al cerrar la aplicacion puede estar asociado
 193                 //a que  wxAUINotebook esta en la aplicacion
 194                 //principal (wxContourGUIExample)tambien
 195                 //EED????               delete _theViewPanel;
 196                 //EED????               delete _instantPanel;
 197                 //EED????               delete _buttonsBar;
 198                 //EED????               delete _actualInstant;
 199                 //EED????               delete _sceneManager;
 200         }
 201
 202
 203         //------------------------------------------------------------------------------------------------------------
 204         // Creational and initialization methods using WxAui
 205         //------------------------------------------------------------------------------------------------------------
 206         //
 207         wxAuiNotebook * wxContourMainFrame :: createNotebook()
 208         {
 209                 wxSize client_size = GetClientSize();
 210                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 211                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 212                 return noteBook;
 213         }
 214
 215
 216         //------------------------------------------------------------------------------------------------------------
 217         // Creational and initialization methods
 218         //------------------------------------------------------------------------------------------------------------
 219         bool wxContourMainFrame :: configurePanels( )
 220         {
 221                 bool configured = _theViewPanel!=NULL;
 222
 223                 configured &= _theViewPanel!=NULL;
 224                 if( _theViewPanel!=NULL )
 225                 {
 226                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 227                         m_mgr.Update();
 228                 }
 229
 230
 231                 if( configured )
 232                 {
 233                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 234                         m_mgr.Update();
 235                 }
 236
 237                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 238                 m_mgr.Update();
 239
 240                 SetMinSize(wxSize(300,300));
 241                 m_mgr.Update();
 242                 return configured;
 243         }
 244
 245
 246         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 247                 {
 248                 bool configured = panel!=NULL;
 249                 configured &= panel!=NULL;
 250
 251                 if( configured )
 252                 {
 253                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 254                         m_mgr.Update();
 255                 }
 256                 return configured;
 257         }
 258
 259         //------------------------------------------------------------------------------------------------------------
 260         //  Attributes getters and setters
 261         //------------------------------------------------------------------------------------------------------------
 262
 263
 264
 265         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 266         {
 267                 _instantPanel = theInstantChooserPanel;
 268         }
 269
 270 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 271 //      {
 272 //              _buttonsBar = theButtonsBar;
 273 //      }
 274
 275 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 276 //      {
 277 //              _gridPanel = theGridPanel;
 278 //      }
 279
 280 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 281 //      {
 282 //              _drawToolsPanel = theDrawToolsPanel;
 283 //      }
 284
 285 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 286 //      {
 287 //              _operationsToolsPanel = theOperationsToolsPanel;
 288 //      }
 289
 290 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 291 //      {
 292 //              _autoFormsPanel = theAutoFormsPanel;
 293 //      }
 294
 295 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 296 //      {
 297 //              _standardToolsPanel= theStandardToolsPanel;
 298 //      }
 299
 300 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 301 //      {
 302 //              _editionToolsPanel =  theEditionToolsPanel;
 303 //      }
 304
 305 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 306 //      {
 307 //              _listViewPanel = theListViewPanel;
 308 //      }
 309
 310
 311
 312 void wxContourMainFrame::onCreateContourSpline( ){
 313
 314         //JCP 20-10-08 Undo redo implementation
 315         saveState();
 316         //JCP 20-10-08 Undo redo implementation
 317         createContour( 1 );
 318
 319 }
 320 void wxContourMainFrame::onCreateContourRectangle( ){
 321     //JCP 20-10-08 Undo redo implementation
 322         saveState();
 323         //JCP 20-10-08 Undo redo implementation
 324         createContour( 2 );
 325 }
 326 void wxContourMainFrame::onCreateContourCircle( ){
 327     //JCP 20-10-08 Undo redo implementation
 328         saveState();
 329         //JCP 20-10-08 Undo redo implementation
 330         createContour( 3 );
 331 }
 332
 333 void wxContourMainFrame::onCreateContourLine( ){
 334     //JCP 20-10-08 Undo redo implementation
 335         saveState();
 336         //JCP 20-10-08 Undo redo implementation
 337         createContour( 6 );
 338 }
 339
 340 // RaC 09-09 --------------------------------------
 341 void wxContourMainFrame::onCreateContourPoints( ){
 342     //JCP 20-10-08 Undo redo implementation
 343         saveState();
 344         //JCP 20-10-08 Undo redo implementation
 345         createContour( 7 );
 346 }
 347 // RaC 09-09 --------------------------------------
 348
 349 // RaC 10-09 --------------------------------------
 350 void wxContourMainFrame::onCreateContourPolygon( ){
 351     //JCP 20-10-08 Undo redo implementation
 352         saveState();
 353         //JCP 20-10-08 Undo redo implementation
 354         createContour( 10 );
 355 }
 356 // RaC 10-09 --------------------------------------
 357
 358 //------------------------------------------------------------------------------------------------------------
 359
 360 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 361 {
 362         //Creating the manualBaseModel and including in the model
 363         manualBaseModel * manModelContour = factoryManualContourModel(panel );
 364
 365         std::vector<int> instantVector;
 366         _instantPanel->getInstant( instantVector );
 367         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 368
 369         /*std::vector<int> instantVector;
 370         _instantPanel->getInstant( instantVector );
 371         std::string theName;
 372         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 373         bool addedModel = theName.compare("") != 0;//??
 374
 375         if( addedModel )
 376         {
 377                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 378                 _theViewPanel->getSpacing(spc);
 379                 //Adding the manualContourControler to interface objects structure
 380                 //Adding the manualViewContour to interface objects structure
 381                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 382                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 383         }
 384 }
 385 void wxContourMainFrame :: createContour( int typeContour )
 386 {
 387         //Creating the manualContourModel and including in the model
 388         manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 389
 390         std::vector<int> instantVector;
 391         _instantPanel->getInstant( instantVector );
 392         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 393
 394         /*std::vector<int> instantVector;
 395         _instantPanel->getInstant( instantVector );
 396         std::string theName;
 397         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 398         bool addedModel = theName.compare("") != 0;//??
 399         if( addedModel )
 400         {
 401                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 402                 _theViewPanel->getSpacing(spc);
 403                 //Adding the manualContourControler to interface objects structure
 404                 //Adding the manualViewContour to interface objects structure
 405                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 406                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 407         }
 408
 409 }
 410 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 411
 412         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 413         manualBaseModel *manModelContour=NULL;
 414         manModelContour = manModelContourBullEye;
 415         if (panel!=NULL){
 416                 int iCrown,sizeCrowns,iSector,sizeSectors;
 417                 double radioA,radioB,ang,angDelta ;
 418                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 419                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 420                 {
 421                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 422                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 423                         if (iCrown==sizeCrowns-1)
 424                         {
 425                                 radioA  = 0;
 426                         } else {
 427                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 428                         }
 429                         radioA=radioA/100.0;
 430                         radioB=radioB/100.0;
 431                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 432                         {
 433                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 434                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 435                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 436                         } // for iSector
 437                 } // for iCrown
 438         } // if _panelBullEyeOptions
 439
 440         return manModelContour;
 441 }
 442 void wxContourMainFrame :: saveState(){
 443
 444         std::string temp = kernelManager->saveState();
 445         saveFileWithContours(temp);
 446 }
 447
 448 void wxContourMainFrame::onDeleteContour(){
 449         //JCP 20-10-08 Undo redo implementation
 450                 saveState();
 451                 //JCP 20-10-08 Undo redo implementation
 452
 453                 std::vector<std::string> lstKeyNameToBeErase;
 454                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 455                 deleteContours( lstKeyNameToBeErase );
 456 /*JCP 19 - 11 - 08
 457                 int i,size=_sceneManager->getSelectedObjects().size();
 458                 for(i=0;i<size;i++)
 459                 {
 460                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 461                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 462                         if ( ispartofstaticlist>=0 )
 463                         {
 464                                 std::vector<int> tempVector;
 465                                 _instantPanel->getInstant( tempVector );
 466                                 Instant instant(&tempVector);
 467                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 468                         }
 469                 }
 470
 471                 std::vector<std::string> lstKeyName;
 472                 std::vector<std::string> lstKeyNameActualSlice;
 473                 std::vector<std::string> lstKeyNameToBeErase;
 474
 475                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 476                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 477                 int k,kSize=lstKeyNameToBeErase.size();
 478                 int j,jSize=lstKeyNameActualSlice.size();
 479                 bool ok;
 480                 for (k=0;k<kSize; k++)
 481                 {
 482                         ok=false;
 483                         for (j=0;j<jSize; j++)
 484                         {
 485                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 486                                 {
 487                                         ok=true;
 488                                 }
 489                         } // for j
 490                         if (ok==true)
 491                         {
 492                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 493                         } // if ok
 494                 } // for k
 495
 496                 deleteContours( lstKeyName );
 497 JCP 19 - 11 - 08*/
 498 }
 499
 500 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 501 {
 502         int i,size=keyNamesVector.size();
 503         for (i=0;i<size;i++)
 504         {
 505                 deleteContour( keyNamesVector[i] );
 506         }
 507 }
 508
 509 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
 510         /*
 511         manualContourModel                      * cModel;
 512         manualViewBaseContour           * cViewer;
 513         manualContourBaseControler      * cControler;
 514
 515         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 516         cControler      = conwrapviewControl->getControler();*/
 517
 518         //JCP 21 - 11 - 2008
 519         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 520         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 521
 522         if (isedit  && ispartofstaticlst)
 523         {
 524                 _theViewPanel->removeFromScene(theKeyName);
 525
 526                 kernelManager->deleteCModel(theKeyName);
 527                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 528                 //cViewer               = conwrapviewControl->getViewer();
 529                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 530                 //cControler* conwrapviewControl->getControler();
 531         //      delete cModel;
 532         //      delete cViewer;
 533         //      delete cControler;
 534         } // if editable
 535 //JCP 21 - 11 - 08
 536 }
 537
 538 void wxContourMainFrame::onDeleteContoursActSlice(){
 539         //JCP 20-10-08 Undo redo implementation
 540         saveState();
 541         //JCP 20-10-08 Undo redo implementation
 542         deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 543 }
 544 void wxContourMainFrame::onDeleteAllContours(){
 545         //JCP 20-10-08 Undo redo implementation
 546         saveState();
 547         deleteAllContours();
 548 }
 549 void wxContourMainFrame::deleteAllContours(){
 550         //JCP 20-10-08 Undo redo implementation
 551
 552         wxBusyCursor wait;
 553         std::vector<int> tempVector;
 554         _instantPanel->getInstant( tempVector );
 555
 556 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 557 //              the values in GetStart and GetEnd will then not be initialize also.
 558 //              We use instead the values given when initializing the _deletepanel.
 559
 560         //int minZ = _mbarrangeDeleteAll->GetStart();
 561         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 562         int minZ, maxZ;
 563
 564         minZ = 0;
 565         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 566
 567 //JCP --08-09-2008
 568
 569         _theViewPanel->getSceneManager()->removeSceneContours( );
 570         _theViewPanel->getSceneManager()->removeAllOutlines();
 571         kernelManager->removeAllOutlines();
 572 //JCP --08-09-2008
 573         /*
 574         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 575         {
 576                 _theViewPanel->getSceneManager()->removeSceneContours( );
 577                 _modelManager->removeAllOutlines();
 578                 _theViewPanel->getSceneManager()->removeAllOutlines();
 579
 580         } else {
 581                 for ( z=minZ ; z<=maxZ ; z++)
 582                 {
 583                         tempVector[1]=z;
 584                         Instant instant(&tempVector);
 585                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 586
 587                         sizeLstContourThings = lstContourThings.size();
 588                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 589                         {
 590                                 ContourThing **contourthing = lstContourThings[ii];
 591                                 deleteContour( (*contourthing)->getName() );
 592                         } //for ii
 593                 }// for z
 594         } // if
 595 JCP --08-09-2008 */
 596 }
 597
 598 void wxContourMainFrame::setConceptValue( std::string name, int value ){
 599         _instantPanel->setConceptValue(name, value);
 600 }
 601
 602
 603 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
 604         return _instantPanel->getLastConceptData();
 605 }
 606
 607
 608 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
 609         return _instantPanel->getIfConceptCheckedAt( name, pos );
 610 }
 611
 612
 613
 614 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
 615 {
 616         vtkImageData * mask;
 617         vtkImageData * value;
 618         this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
 619
 620         std::vector<int> nTypeView;
 621         nTypeView.push_back(5);
 622         nTypeView.push_back(1);
 623         nTypeView.push_back(2);
 624         nTypeView.push_back(0);
 625
 626         wxFrame *frame = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
 627         wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
 628         m_mgr_noteBookViewerResult->SetManagedWindow(frame);
 629
 630         wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(frame, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
 631         m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 632
 633         wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
 634         wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
 635
 636
 637         noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
 638         noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
 639         m_mgr_noteBookViewerResult->Update();
 640         frame->Show();
 641 }
 642
 643
 644
 645
 646 void wxContourMainFrame::changeInstant()
 647 {
 648                 std::vector<int> instantVect;
 649                 _instantPanel->getInstant( instantVect );
 650                 int actualSlice = instantVect[1];
 651
 652                 kernelManager->setInstant(instantVect);
 653
 654             // Refresh Mask image
 655                 if(_viewMaskImage!=NULL){
 656                         _viewMaskImage->SetZ(actualSlice);
 657                         if (_viewMaskImagePanel->IsVisible()==true)
 658                         {
 659                                 vtkImageData *mask, *value;
 660                                 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
 661                                 _viewMaskImage->onThreshold();
 662                         }
 663                 }
 664
 665         // Refresh Threshold image
 666                 if(_viewThresholdImage!=NULL){
 667                         _viewThresholdImage->SetZ(actualSlice);
 668                         if (_viewThresholdImagePanel->IsVisible()==true){
 669                                 _viewThresholdImage->onThreshold();
 670                         }
 671                 }
 672
 673                 updateInstantOutlines();
 674                 updateInstantImageData();
 675                 updateInstantAxes();
 676 }
 677
 678
 679
 680 void wxContourMainFrame :: updateInstantOutlines()
 681 {
 682         _theViewPanel->removeSceneContours();
 683         _theViewPanel->addNameWrapperToScene();
 684
 685         //for( int i=0; i<size; i++)
 686         //{
 687         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 688         //}
 689 }
 690
 691 int wxContourMainFrame::getNamesWrappingSize(){
 692         return kernelManager->getNamesWrappingSize();
 693 }
 694 std::string wxContourMainFrame::getNameWrapping(int i){
 695         return kernelManager->getNameWrapping(i);
 696 }
 697
 698 void wxContourMainFrame::updateInstantImageData()
 699 {
 700         std::vector<int> inst;
 701         _instantPanel->getInstant(inst);
 702
 703         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 704         if(img!=NULL){
 705                 _theViewPanel->changeImage(img);
 706                 showAxis(false);
 707         }else{
 708                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 709                 _theViewPanel->setImageSlice(z);
 710         }
 711 }
 712
 713 void wxContourMainFrame::updateInstantAxes()
 714 {
 715 }
 716
 717
 718 void wxContourMainFrame::onChangeDeep(int val){
 719         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 720         changeInstant();
 721 }
 722
 723
 724 void wxContourMainFrame::onCopy(){
 725         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 726
 727         std::vector<int> tempVector;
 728         _instantPanel->getInstant( tempVector );
 729     _performingOperation->reset();
 730         _performingOperation->setStartCommand( COPY );
 731         _performingOperation->setStartOperationInstantVector( tempVector );
 732         _performingOperation->setKeyNamesOperationElems( currentSelection );
 733 }
 734
 735 void wxContourMainFrame::onPaste(){
 736
 737
 738         char theStartCommand = _performingOperation->getStartCommand();
 739         if (  theStartCommand == COPY )
 740         {
 741                 //JCP 20-10-08 Undo redo implementation
 742                 saveState();
 743                 //JCP 20-10-08 Undo redo implementation
 744                 std::vector<int> tempVector;
 745                 _instantPanel->getInstant( tempVector );
 746                 _performingOperation->setEndOperationInstantVector ( tempVector );
 747                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 748                 int i,size = elems.size();
 749                 for( i=0; i<size; i++ )
 750                 {
 751                         createCopyContourOf( elems[i], tempVector, i>0 );
 752                 }
 753         }
 754 }
 755 void wxContourMainFrame::onUndo(){
 756         std::string filename;
 757         if(kernelManager->onUndoSaveFile(filename)){
 758                 saveFileWithContours(filename);
 759         }
 760         if(kernelManager->onUndo(filename)){
 761                 loadState(filename);
 762         }
 763 }
 764 void wxContourMainFrame::onRedo(){
 765         std::string filename;
 766         if(kernelManager->onRedo(filename)){
 767                 loadState(filename);
 768         }
 769
 770 }
 771 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 772 {
 773         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 774         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 775         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 776 }
 777
 778 ///AD: 03-09    Copy the object and apply the given transformation
 779 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 780 {
 781         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 782         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 783
 784         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 785         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 786
 787         double pnt1X = refPoint1->GetX();
 788         double pnt1Y = refPoint1->GetY();
 789 //      double pnt1Z = refPoint1->GetZ();
 790         double pnt2X = refPoint2->GetX();
 791         double pnt2Y = refPoint2->GetY();
 792 //      double pnt2Z = refPoint2->GetZ();
 793
 794         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 795         vtkTransform *t = vtkTransform::New();
 796
 797         t->PostMultiply();
 798         t->Identity();
 799         t->Translate(-pnt1X, -pnt1Y, 0);
 800         t->RotateZ(-angle);
 801         t->Scale(-1,1,1);
 802         t->RotateZ(angle);
 803         t->Translate(pnt1X, pnt1Y, 0);
 804         t->Update();
 805
 806         int i,size=manualModel->GetSizeLstPoints();
 807         for (i=0;i<size;i++)
 808         {
 809                 manualPoint * mp = manualModel->GetManualPoint(i);
 810                 float vecIn[3];
 811                 float vecOut[3];
 812                 vecIn[0]=mp->GetX();
 813                 vecIn[1]=mp->GetY();
 814                 vecIn[2]=mp->GetZ();
 815                 t->TransformPoint( vecIn, vecOut );
 816                 mp->SetPointX( vecOut[0] );
 817                 mp->SetPointY( vecOut[1] );
 818                 mp->SetPointZ( vecOut[2] );
 819         }
 820
 821         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 822 }
 823
 824 void wxContourMainFrame ::loadState(std::string filename){
 825         char tmp[255];
 826         FILE *pFile=fopen(filename.c_str(),"r+");
 827
 828         fscanf(pFile,"%s",tmp); // --CreaContour--
 829
 830         fscanf(pFile,"%s",tmp); // Version
 831         fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 832
 833         deleteAllContours();
 834
 835         loadContours(pFile, false);
 836         loadContours(pFile, true);
 837
 838         fclose(pFile);
 839 }
 840
 841 void wxContourMainFrame ::loadContours( FILE *pFile, bool staticContour )
 842 {
 843         char tmp[255];
 844
 845         fscanf(pFile,"%s",tmp); // ImageDimensions
 846         fscanf(pFile,"%s",tmp); // X
 847         fscanf(pFile,"%s",tmp); // Y
 848         fscanf(pFile,"%s",tmp); // Z
 849
 850         fscanf(pFile,"%s",tmp); // ImageSpacing
 851         fscanf(pFile,"%s",tmp); // X
 852         fscanf(pFile,"%s",tmp); // Y
 853         fscanf(pFile,"%s",tmp); // Z
 854
 855         fscanf(pFile,"%s",tmp); // NumberOfContours
 856         fscanf(pFile,"%s",tmp); // ##
 857         int numberOfContours = atoi(tmp);
 858
 859         std::vector<int> instantVector;
 860         int typeContourModel;
 861         manualBaseModel *manModelContour;
 862         int typeView;
 863
 864         int i;
 865         for (i=0;i<numberOfContours;i++)
 866         {
 867                 instantVector.clear();
 868                 fscanf(pFile,"%s",tmp); // Instant
 869                 fscanf(pFile,"%s",tmp); // 1
 870                 instantVector.push_back( atoi(tmp) );
 871                 fscanf(pFile,"%s",tmp); // 2
 872                 instantVector.push_back( atoi(tmp) );
 873                 fscanf(pFile,"%s",tmp); // 3
 874                 instantVector.push_back( atoi(tmp) );
 875                 fscanf(pFile,"%s",tmp); // 4
 876                 instantVector.push_back( atoi(tmp) );
 877                 fscanf(pFile,"%s",tmp); // 5
 878                 instantVector.push_back( atoi(tmp) );
 879                 fscanf(pFile,"%s",tmp); // 6
 880                 instantVector.push_back( atoi(tmp) );
 881
 882                 fscanf(pFile,"%s",tmp); // TypeContourModel
 883                 fscanf(pFile,"%s",tmp); // ##
 884                 typeContourModel = atoi(tmp);
 885
 886                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
 887                 manModelContour->Open(pFile);
 888
 889                 fscanf(pFile,"%s",tmp); // TypeView
 890                 fscanf(pFile,"%s",tmp); // ##
 891                 typeView = atoi(tmp);
 892
 893                 std::string theName;
 894                 theName = kernelManager->createOutline( manModelContour, instantVector );
 895                 bool addedModel = theName.compare("") != 0;
 896                 if( addedModel )
 897                 {
 898                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 899                         _theViewPanel->getSpacing(spc);
 900                         //Adding the manualContourControler to interface objects structure
 901                         //Adding the manualViewContour to interface objects structure
 902                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 903                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
 904                 }
 905
 906                 if (staticContour==true)
 907                 {
 908                         Instant instant(&instantVector);
 909                         kernelManager->changeContourOfManager( theName , &instant );
 910                 }
 911         }// for  numberOfContours
 912 }
 913
 914 void wxContourMainFrame::onLoad()
 915 {
 916         char tmp[255];
 917         char tmpD[255];
 918         std::string fileNameContourROI = GetFileLocation();
 919
 920 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 921         if(GetFileLocation().empty())
 922         {
 923 //------------------------------------------------------------------------------------------------------------
 924                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 925                 if (dialog.ShowModal() == wxID_OK)
 926                 {
 927                         fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 928                 }
 929         }
 930
 931         FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
 932
 933
 934 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
 935         if(pFile != NULL)
 936         {
 937 //------------------------------------------------------------------------------------------------------------
 938         fileNameContourROI.append("data");
 939                 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
 940                 if(pFileData != NULL)
 941                 {
 942                         fscanf(pFileData,"%s",tmpD); // --CreaContour--
 943                         fscanf(pFileData,"%s",tmpD); // Version
 944                         fscanf(pFileData,"%s",tmpD); // 1.0.2 || 1.0.1 || 1.0.0
 945
 946                         fscanf(pFileData,"%s",tmpD); // onePixelSize
 947                         fscanf(pFileData,"%s",tmpD); // #
 948                         _onePixelSize = atof(tmpD);
 949                         fscanf(pFileData,"%s",tmpD); // NumberOfContours
 950                         fscanf(pFileData,"%s",tmpD); // #
 951                 }
 952
 953                 fscanf(pFile,"%s",tmp); // --CreaContour--
 954
 955                 fscanf(pFile,"%s",tmp); // Version
 956                 fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 957                 std::string version(tmp);
 958
 959                 //AD:02-06-09
 960                 if (version=="1.0.2")
 961                 {
 962                         openContours(pFile,pFileData,2,false);
 963                         openContours(pFile,pFileData,2,true);   //Load StaticContours
 964                 }
 965
 966                 //AD:02-06-09
 967                 else if (version=="1.0.1")
 968                 {
 969                         openContours(pFile,pFileData,1,false); //Skips ImageDimensions and ImageSpacing
 970                         openContours(pFile,pFileData,1,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
 971                 }
 972
 973                 //AD:02-06-09
 974                 else if (version=="1.0.0")
 975                 {
 976                         openContours(pFile,pFileData,1,false); //Skips ImageDimensions and ImageSpacing
 977                 }
 978
 979                 fclose(pFile);
 980
 981                 if(pFileData != NULL)
 982                 {
 983                         fclose(pFileData);
 984                 }
 985         }
 986         _theViewPanel->getSceneManager()->removeSceneContours();
 987         changeInstant();
 988 }
 989
 990 //AD: 29-05-09
 991 void wxContourMainFrame::onSave(){
 992 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 993         if(GetFileLocation().empty())
 994         {
 995 //------------------------------------------------------------------------------------------------------------
 996                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
 997                 if (dialog.ShowModal() == wxID_OK)
 998                 {
 999                         std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1000                         kernelManager->setCurrentFileName(fileNameContourROI);
1001                         saveFileWithContours( fileNameContourROI );
1002                 }
1003         }
1004 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1005         else
1006         {
1007                 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1008                 std::string fileNameContourROI = GetFileLocation();
1009                 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1010                 kernelManager->setCurrentFileName(fileNameContourROI);
1011                 saveFileWithContours( fileNameContourROI);
1012         }
1013 //------------------------------------------------------------------------------------------------------------
1014 }
1015
1016 //AD: 29-05-09
1017 void wxContourMainFrame::saveFileWithContours( std::string filename )
1018 {
1019
1020         FILE *pFile=fopen(filename.c_str(),"w+");
1021
1022 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1023         filename.append("data");
1024         std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1025         FILE *pFileData=fopen(filename.c_str(),"w+");
1026 //------------------------------------------------------------------------------------------------------------
1027
1028         std::vector< std::string > lstNameThings;
1029         int i,sizeLstNameThings;
1030
1031         fprintf(pFile,"--CreaContour--\n");
1032         fprintf(pFile,"Version %s\n", "1.0.2" );
1033
1034 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1035         fprintf(pFileData,"--CreaContour--\n");
1036         fprintf(pFileData,"Version %s\n", "1.0.2" );
1037         fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1038
1039 //------------------------------------------------------------------------------------------------------------
1040
1041         vtkImageData *image = _images[0];
1042
1043         int dimRange[3];
1044         image->GetDimensions(dimRange);
1045
1046         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1047
1048         double spaRange[3];
1049         image->GetSpacing(spaRange);
1050
1051         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1052
1053         // Normal Contours
1054
1055         lstNameThings           = kernelManager->GetLstNameThings();
1056         sizeLstNameThings       = lstNameThings.size();
1057         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1058
1059 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1060         fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1061 //------------------------------------------------------------------------------------------------------------
1062
1063         for (i=0 ; i<sizeLstNameThings ; i++)
1064         {
1065 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1066                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1067                 double sizeInPixel = manualModel ->GetPathSize();
1068                 double realContourSize = sizeInPixel*_onePixelSize;
1069                 manualModel ->SetRealSize(realContourSize);
1070 //------------------------------------------------------------------------------------------------------------
1071
1072         //int size= kernelManager->GetLstNameThings().size();
1073
1074                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1075                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1076         }// for i
1077
1078         //-- Static Contours
1079
1080         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1081
1082         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1083
1084         lstNameThings           = kernelManager->GetLstNameThingsStatic();
1085         sizeLstNameThings       = lstNameThings.size();
1086         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1087
1088 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1089         fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1090 //------------------------------------------------------------------------------------------------------------
1091
1092         for (i=0 ; i<sizeLstNameThings ; i++)
1093         {
1094                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1095                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1096         }// for i
1097         fclose(pFile);
1098         fclose(pFileData);
1099 }
1100
1101 //AD:04-06-09
1102 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, int version, bool staticContour )
1103 {
1104         char tmp[255];
1105
1106         vtkImageData *image = _images[0];
1107         int imageDim[3];
1108         double imageSpac[3];
1109         int tempDim[3];
1110         double tempSpac[3];
1111
1112         bool compatible = true;
1113
1114         //Version==2
1115         if (version==2)
1116         {
1117                 image->GetDimensions(imageDim);
1118                 image->GetSpacing(imageSpac);
1119
1120                 fscanf(pFile,"%s",tmp); // ImageDimensions
1121                 fscanf(pFile,"%s",tmp); // X
1122                 tempDim[0] = atoi(tmp);
1123                 fscanf(pFile,"%s",tmp); // Y
1124                 tempDim[1] = atoi(tmp);
1125                 fscanf(pFile,"%s",tmp); // Z
1126                 tempDim[2] = atoi(tmp);
1127
1128                 fscanf(pFile,"%s",tmp); // ImageSpacing
1129                 fscanf(pFile,"%s",tmp); // X
1130                 tempSpac[0] = atof(tmp);
1131                 fscanf(pFile,"%s",tmp); // Y
1132                 tempSpac[1] = atof(tmp);
1133                 fscanf(pFile,"%s",tmp); // Z
1134                 tempSpac[2] = atof(tmp);
1135
1136                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1137                 if (imageDim[0]!=tempDim[0] || imageDim[1]!=tempDim[1] || imageSpac[0]!=tempSpac[0] || imageSpac[1]!=tempSpac[1])
1138                 {
1139                         compatible = false;
1140                 }
1141         }
1142
1143         fscanf(pFile,"%s",tmp); // NumberOfContours
1144         fscanf(pFile,"%s",tmp); // ##
1145         int numberOfContours = atoi(tmp);
1146
1147         std::vector<int> instantVector;
1148         int typeContourModel;
1149         manualBaseModel *manModelContour;
1150         int typeView;
1151
1152         if (compatible==true)
1153         {
1154                 int i;
1155                 for (i=0;i<numberOfContours;i++)
1156                 {
1157                         instantVector.clear();
1158                         fscanf(pFile,"%s",tmp); // Instant
1159
1160                         fscanf(pFile,"%s",tmp); // 1
1161                         instantVector.push_back( atoi(tmp) );
1162                         fscanf(pFile,"%s",tmp); // 2
1163                         instantVector.push_back( atoi(tmp) );
1164                         fscanf(pFile,"%s",tmp); // 3
1165                         instantVector.push_back( atoi(tmp) );
1166                         fscanf(pFile,"%s",tmp); // 4
1167                         instantVector.push_back( atoi(tmp) );
1168                         fscanf(pFile,"%s",tmp); // 5
1169                         instantVector.push_back( atoi(tmp) );
1170                         fscanf(pFile,"%s",tmp); // 6
1171                         instantVector.push_back( atoi(tmp) );
1172
1173
1174                         fscanf(pFile,"%s",tmp); // TypeContourModel
1175                         fscanf(pFile,"%s",tmp); // ##
1176                         typeContourModel = atoi(tmp);
1177
1178                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1179                         manModelContour->Open(pFile);
1180                         if(pFileData != NULL)
1181                         {
1182                                 manModelContour->OpenData(pFileData);
1183                         }
1184
1185                         fscanf(pFile,"%s",tmp); // TypeView
1186                         fscanf(pFile,"%s",tmp); // ##
1187                         typeView = atoi(tmp);
1188
1189                         std::string theName;
1190                         theName = kernelManager->createOutline( manModelContour, instantVector );
1191                         bool addedModel = theName.compare("") != 0;
1192                         if( addedModel )
1193                         {
1194                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1195                                 _theViewPanel->getSpacing(spc);
1196                                 //Adding the manualContourControler to interface objects structure
1197                                 //Adding the manualViewContour to interface objects structure
1198                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1199                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1200                         }
1201
1202                         if (staticContour) //StaticContours (will appear in all slices)
1203                         {
1204                                 Instant instant(&instantVector);
1205                                 kernelManager->changeContourOfManager( theName , &instant );
1206                         }
1207
1208                 }// for  numberOfContours
1209         }
1210
1211         else if (compatible==false)
1212         {
1213                 wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(260,160));
1214                 wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1215                 wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1216
1217                 wxString lstOptOperation[2];
1218                 lstOptOperation[0]=_T("By Dimension");
1219                 lstOptOperation[1]=_T("By Spacing");
1220                 wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation,  2, wxRA_SPECIFY_COLS);
1221
1222                 dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1223                 dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1224                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1225                 dialSizer->Add(radioOpts,0,wxGROW);
1226                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1227                 dialSizer->Add(buttonsSizer,0,wxGROW);
1228                 dial->SetSizer(dialSizer, true);
1229                 dial->Layout();
1230                 dial->ShowModal();
1231
1232                 int typeOfTransformation = -1;
1233                 bool transform = false;
1234
1235                 if (dial->GetReturnCode() == wxID_OK)
1236                 {
1237                         typeOfTransformation = radioOpts->GetSelection();
1238                         transform = true;
1239                 }
1240
1241                 int i;
1242                 for (i=0;i<numberOfContours;i++)
1243                 {
1244                         instantVector.clear();
1245                         fscanf(pFile,"%s",tmp); // Instant
1246
1247                         fscanf(pFile,"%s",tmp); // 1
1248                         instantVector.push_back( atoi(tmp) );
1249                         fscanf(pFile,"%s",tmp); // 2
1250                         instantVector.push_back( atoi(tmp) );
1251                         fscanf(pFile,"%s",tmp); // 3
1252                         instantVector.push_back( atoi(tmp) );
1253                         fscanf(pFile,"%s",tmp); // 4
1254                         instantVector.push_back( atoi(tmp) );
1255                         fscanf(pFile,"%s",tmp); // 5
1256                         instantVector.push_back( atoi(tmp) );
1257                         fscanf(pFile,"%s",tmp); // 6
1258                         instantVector.push_back( atoi(tmp) );
1259
1260                         fscanf(pFile,"%s",tmp); // TypeContourModel
1261                         fscanf(pFile,"%s",tmp); // ##
1262                         typeContourModel = atoi(tmp);
1263
1264                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1265                         manModelContour->Open(pFile);
1266                         if(pFileData != NULL)
1267                         {
1268                                 manModelContour->OpenData(pFileData);
1269                         }
1270                         if (transform==true)
1271                         {
1272                                 if (typeOfTransformation==0)
1273                                 {
1274                                         double transX, transY;
1275                                         transX = (double) imageDim[0]/tempDim[0];
1276                                         transY = (double) imageDim[1]/tempDim[1];
1277                                         manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1278                                 }
1279                                 else if (typeOfTransformation==1)
1280                                 {
1281                                         double transX, transY;
1282                                         transX = (double) tempSpac[0]/imageSpac[0];
1283                                         transY = (double) tempSpac[1]/imageSpac[1];
1284                                         manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1285                                 }
1286                         }
1287
1288                         fscanf(pFile,"%s",tmp); // TypeView
1289                         fscanf(pFile,"%s",tmp); // ##
1290                         typeView = atoi(tmp);
1291
1292                         std::string theName;
1293                         theName = kernelManager->createOutline( manModelContour, instantVector );
1294                         bool addedModel = theName.compare("") != 0;
1295                         if( addedModel )
1296                         {
1297                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1298                                 _theViewPanel->getSpacing(spc);
1299                                 //Adding the manualContourControler to interface objects structure
1300                                 //Adding the manualViewContour to interface objects structure
1301                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1302                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1303                         }
1304
1305                         if (staticContour) //StaticContours (will appear in all slices)
1306                         {
1307                                 Instant instant(&instantVector);
1308                                 kernelManager->changeContourOfManager( theName , &instant );
1309                         }
1310                 }// for  numberOfContours
1311         }
1312 }
1313
1314 void wxContourMainFrame::RefreshInterface(){
1315         changeInstant();
1316         _theViewPanel->RefreshInterface();
1317         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1318         //wxvtk2dbaseview->Refresh();
1319 }
1320
1321 vtkImageData* wxContourMainFrame::getImageData(){
1322         return _theViewPanel->getImageData();
1323 }
1324
1325 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1326 {
1327         //JCP 20-10-08 Undo redo implementation
1328         saveState();
1329         //JCP 20-10-08 Undo redo implementation
1330
1331         wxBusyCursor wait;
1332         int                                     x                                       = _theViewPanel->GetX();
1333         int                                     y                                       = _theViewPanel->GetY();
1334         int                                     z                                       = _theViewPanel->GetZ();
1335         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1336         RefreshInterface();
1337 }
1338
1339 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1340 {
1341         int typeofcontour = 1;
1342         //Image Data
1343         vtkImageData    *imagedata      = getImageData();
1344
1345         //Tipo de pixeles a utilizar internamente en ITK
1346         typedef   float  InternalPixelType;
1347         const     unsigned int    Dimension = 2;
1348         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1349
1350         //Tipo de pixeles de salida 1
1351         typedef unsigned char OutputPixelType;
1352         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1353
1354         //Tipo de pixeles de salida 2
1355         typedef unsigned short OutputPixelType2;
1356         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1357
1358         //DefiniciÛn del thresholder
1359         typedef itk::BinaryThresholdImageFilter<
1360                                                         InternalImageType,
1361                                                         OutputImageType    >    ThresholdingFilterType;
1362
1363         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1364         typedef itk::CastImageFilter<
1365                                 OutputImageType, OutputImageType2 >  CastFilterType;
1366
1367         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1368         typedef itk::CastImageFilter<
1369                                 OutputImageType2, InternalImageType >  CastFilterType2;
1370
1371         //Tercer tipo de conversiÛn
1372         typedef itk::RescaleIntensityImageFilter<
1373                                                                 InternalImageType,
1374                                                                 OutputImageType >   CastFilterType3;
1375
1376         //Cuarto tipo de conversiÛn
1377         typedef itk::RescaleIntensityImageFilter<
1378                                                                 OutputImageType,
1379                                                                 OutputImageType >   CastFilterType4;
1380
1381         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1382
1383         thresholder->SetLowerThreshold( 0.0 );
1384         thresholder->SetUpperThreshold( 128 );
1385
1386         thresholder->SetOutsideValue(  255  );
1387         thresholder->SetInsideValue(  0 );
1388
1389         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1390         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1391         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1392         typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1393
1394         ConnectorType::Pointer connector= ConnectorType::New();
1395         ConnectorType2::Pointer connector2= ConnectorType2::New();
1396
1397
1398         CastFilterType::Pointer filter=CastFilterType::New();
1399         CastFilterType2::Pointer filter2=CastFilterType2::New();
1400
1401         connector->SetInput( imagedata );
1402         filter2->SetInput(connector->GetOutput());
1403
1404         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1405                                                                 InternalImageType,
1406                                                                 InternalImageType >  SmoothingFilterType;
1407
1408         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1409
1410         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1411                                                                 InternalImageType,
1412                                                                 InternalImageType >  GradientFilterType;
1413
1414         typedef   itk::SigmoidImageFilter<
1415                                                                 InternalImageType,
1416                                                                 InternalImageType >  SigmoidFilterType;
1417
1418         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1419
1420         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1421
1422         sigmoid->SetOutputMinimum(  0.0  );
1423         sigmoid->SetOutputMaximum(  255.0  );
1424
1425
1426         typedef  itk::FastMarchingImageFilter<
1427                                                                 InternalImageType,
1428                                                                 InternalImageType >    FastMarchingFilterType;
1429
1430
1431         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1432
1433         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1434                                         InternalImageType >    GeodesicActiveContourFilterType;
1435         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1436                                                                                 GeodesicActiveContourFilterType::New();
1437
1438         typedef  itk::ZeroCrossingImageFilter<
1439                                                                 InternalImageType,
1440                                                                 InternalImageType >    ZeroCrossingFilterType;
1441         ZeroCrossingFilterType::Pointer zeroCrossing =
1442                                                         ZeroCrossingFilterType::New();
1443
1444         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1445
1446         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1447         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1448         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1449
1450         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1451         int it=atoi(  crea::wx2std(iter).c_str() );
1452         geodesicActiveContour->SetNumberOfIterations( it );
1453
1454         smoothing->SetInput( filter2->GetOutput() );
1455         gradientMagnitude->SetInput( smoothing->GetOutput() );
1456         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1457         fastMarching->SetInput( sigmoid->GetOutput() );
1458         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1459         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1460
1461         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1462         //thresholder->SetInput( zeroCrossing->GetOutput() );
1463         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1464         connector2->SetInput( thresholder->GetOutput()  );
1465
1466
1467         smoothing->SetTimeStep( 0.125 );
1468         smoothing->SetNumberOfIterations(  5 );
1469         smoothing->SetConductanceParameter( 9.0 );
1470
1471
1472         const double sigma = atof(  crea::wx2std(sigm).c_str() );
1473         gradientMagnitude->SetSigma(  sigma  );
1474
1475         const double alpha =  atof(  crea::wx2std(alf).c_str() );
1476         const double beta  =  atof(  crea::wx2std(bet).c_str() );
1477
1478         sigmoid->SetAlpha( alpha );
1479         sigmoid->SetBeta(  beta  );
1480
1481         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1482         typedef FastMarchingFilterType::NodeType       NodeType;
1483
1484         NodeContainer::Pointer seeds = NodeContainer::New();
1485
1486         InternalImageType::IndexType  seedPosition;
1487         seedPosition[0] = x;
1488         seedPosition[1] = y;
1489
1490         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1491
1492         NodeType node;
1493
1494         const double seedValue = - initialDistance;
1495
1496         node.SetValue( seedValue );
1497         node.SetIndex( seedPosition );
1498
1499         seeds->Initialize();
1500         seeds->InsertElement( 0, node );
1501
1502         fastMarching->SetTrialPoints( seeds );
1503
1504         fastMarching->SetSpeedConstant( 1.0 );
1505
1506         fastMarching->SetOutputSize(
1507                         connector->GetOutput()->GetBufferedRegion().GetSize() );
1508
1509         fastMarching->SetStoppingValue( 800 );
1510         try
1511     {
1512
1513         connector2->Update();
1514         vtkImageData *idata = connector2->GetOutput();
1515
1516         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1517
1518         cntVTK->SetInput( idata );
1519
1520         cntVTK->SetNumberOfContours( 1 );
1521         cntVTK->SetValue( 0, 255 );
1522         cntVTK->Update( );
1523         cntVTK->UpdateInformation();
1524
1525         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1526         cpd->SetInput( cntVTK->GetOutput( ) );
1527         cpd->Update( );
1528         cpd->UpdateInformation();
1529
1530         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1531         conn->SetExtractionModeToLargestRegion( );
1532         conn->SetInput( cpd->GetOutput( ) );
1533         conn->Update( );
1534         conn->UpdateInformation();
1535
1536         vtkStripper* vtkstripper = vtkStripper::New( );
1537         vtkstripper->SetInput( conn->GetOutput() );
1538         vtkstripper->Update();
1539         vtkstripper->UpdateInformation();
1540
1541
1542         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1543         //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1544         polyDataResult->Update( );
1545         polyDataResult->UpdateInformation();
1546
1547         //EED
1548                 /*
1549         ofstream myfile;
1550         myfile.open ("C:/Creatis/example.txt");
1551         myfile << "\n";
1552         polyDataResult->Print(myfile);
1553         myfile << "-------------------------------------\n";
1554         polyDataResult->GetLines()->Print(myfile);
1555         myfile.close();*/
1556
1557         cntVTK          -> Delete();
1558         cpd                     -> Delete();
1559         conn            -> Delete();
1560
1561
1562         //--Calculating control points
1563
1564         std::vector<double> vecX;
1565         std::vector<double> vecY;
1566         std::vector<double> vecXo;
1567         std::vector<double> vecYo;
1568         std::vector<double>::iterator vecXoi;
1569         std::vector<double>::iterator vecYoi;
1570         std::vector<double> vecZ;
1571
1572         std::vector<double> vecCtrlPointX;
1573         std::vector<double> vecCtrlPointY;
1574         std::vector<double> vecCtrlPointZ;
1575
1576
1577         double *p;
1578         double xAct=0;
1579         double yAct=0;
1580         int ii,size=polyDataResult->GetNumberOfPoints();
1581         ofstream myfile;
1582         myfile.open ("C:/Creatis/example2.txt");
1583
1584         size=polyDataResult->GetNumberOfPoints();
1585         for (ii=0;ii<size;ii++)
1586         {
1587                 if(ii==0)
1588                 {
1589                         xAct=x;
1590                         yAct=y;
1591                 }
1592                 p       = polyDataResult->GetPoint(ii);
1593                 double x=p[0];
1594                 double y=p[1];
1595                 /*if(fabs(yAct-y)>20)
1596                 {
1597                         if((xAct-x)>1 || (xAct-x)<-1)
1598                         {
1599                         vecX.push_back( p[0] );
1600                         vecY.push_back( p[1] );
1601                         myfile <<p[0]<<","<<p[1]<<"\n";
1602                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1603                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1604                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1605                         vecZ.push_back( 900 );
1606                         xAct=x;
1607                         yAct=y;
1608                         }
1609                         else
1610                         {
1611                                 vecXo.push_back(p[0]);
1612                                 vecYo.push_back(p[1]);
1613                         }
1614
1615                 }
1616                 else*/ if(fabs(xAct-x)>11)
1617                 {
1618                         vecXo.push_back(p[0]);
1619                         vecYo.push_back(p[1]);
1620                 }
1621                 else
1622                 {
1623                 vecX.push_back( p[0] );
1624                 myfile <<p[0]<<","<<p[1]<<"\n";
1625                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1626                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1627                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1628                 vecY.push_back( p[1] );
1629                 vecZ.push_back( 900 );
1630                 xAct=x;
1631                 yAct=y;
1632                 }
1633
1634
1635         }
1636
1637         while(!vecXo.empty())
1638         {
1639                 vecX.push_back(vecXo.back());
1640                 //std::cout<<" x Siguiente "<<vecXo.back();
1641                 vecXo.pop_back();
1642                 vecZ.push_back( 900 );
1643         }
1644         while(!vecYo.empty())
1645         {
1646                 vecY.push_back(vecYo.back());
1647                         vecYo.pop_back();
1648         }
1649         myfile.close();
1650
1651         /*for(int l=0;l<vecX.size();l++)
1652         {
1653                 if(l==0)
1654                 {
1655             vecXo.push_back(p[0]);
1656                         vecYo.push_back(p[1]);
1657                 }
1658                 else
1659                 {
1660                         if(vecXoi[l-1]==)
1661                         {
1662                         }
1663                 }
1664
1665         }*/
1666
1667         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1668
1669         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1670
1671         int method=2;
1672         if (method==0){
1673                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1674         }
1675         else if (method==1){
1676                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1677         }
1678         else if (method==2){
1679                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1680                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1681         }
1682         //--Adding contour to the system
1683
1684         std::vector<int> actualInstantVector;
1685         _instantPanel->getInstant( actualInstantVector );
1686         actualInstantVector[1]=z;
1687
1688         int j,sizeCtrPt = vecCtrlPointX.size();
1689
1690         manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1691         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1692         if (sizeCtrPt>=3){
1693                 for (j=0 ; j<sizeCtrPt ; j++)
1694                 {
1695                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1696                 } // for
1697                 std::string theName;
1698                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1699                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1700                 bool addedModel = theName.compare("") != 0;
1701                 if( addedModel )
1702                 {
1703                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1704                         _theViewPanel->getSpacing(spc);
1705                         //Adding the manualContourControler to interface objects structure
1706                         //Adding the manualViewContour to interface objects structure
1707                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1708                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1709                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1710                 }       // if addedModel
1711         } // if sizeCtrPt
1712
1713
1714
1715                  WriterType::Pointer writer = WriterType::New();
1716          CastFilterType3::Pointer caster = CastFilterType3::New();
1717
1718                  caster->SetInput( gradientMagnitude->GetOutput() );
1719                  writer->SetInput( caster->GetOutput() );
1720                  writer->SetFileName("Gradient Magnitude.png");
1721                  caster->SetOutputMinimum(   0 );
1722                  caster->SetOutputMaximum( 255 );
1723                  writer->Update();
1724
1725                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1726                  WriterType::Pointer writer2 = WriterType::New();
1727
1728                  caster2->SetInput( sigmoid->GetOutput() );
1729                  writer2->SetInput( caster2->GetOutput() );
1730                  writer2->SetFileName("Sigmoid.png");
1731                  caster2->SetOutputMinimum(   0 );
1732                  caster2->SetOutputMaximum( 255 );
1733                  writer2->Update();
1734
1735                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1736                  WriterType::Pointer writer3 = WriterType::New();
1737
1738                  caster3->SetInput( fastMarching->GetOutput() );
1739                  writer3->SetInput( caster3->GetOutput() );
1740                  writer3->SetFileName("FastMarching.bmp");
1741                  caster3->SetOutputMinimum(   0 );
1742                  caster3->SetOutputMaximum( 255 );
1743                  writer3->Update();
1744
1745                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1746                  WriterType::Pointer writer4 = WriterType::New();
1747
1748                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1749                  writer4->SetInput( caster4->GetOutput() );
1750                  writer4->SetFileName("GeodesicActiveContour.png");
1751                  caster4->SetOutputMinimum(   0 );
1752                  caster4->SetOutputMaximum( 255 );
1753                  writer4->Update();
1754
1755                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1756                  WriterType::Pointer writer5 = WriterType::New();
1757
1758                  caster5->SetInput( zeroCrossing->GetOutput() );
1759                  writer5->SetInput( caster5->GetOutput() );
1760                  writer5->SetFileName("ZeroCrossing.bmp");
1761                  caster5->SetOutputMinimum(   0 );
1762                  caster5->SetOutputMaximum( 255 );
1763                  writer5->Update();
1764     }
1765   catch( itk::ExceptionObject & excep )
1766     {
1767     std::cerr << "Exception caught !" << std::endl;
1768     std::cerr << excep << std::endl;
1769     }
1770 }
1771
1772 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1773
1774         //JCP 20-10-08 Undo redo implementation
1775         saveState();
1776         //JCP 20-10-08 Undo redo implementation
1777
1778         wxBusyCursor wait;
1779         int                                     x                                       = _theViewPanel->GetX();
1780         int                                     y                                       = _theViewPanel->GetY();
1781         int                                     z                                       = _theViewPanel->GetZ();
1782         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1783         RefreshInterface();
1784 }
1785
1786
1787 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1788 {
1789         int typeofcontour = 1;
1790         //--Extracting Contour
1791         //vtkImageData  *imagedata      = _theViewPanel->getSceneManager()->GetImageData();
1792         vtkImageData    *imagedata      = getImageData();
1793 //              double                  *range          = imagedata->GetScalarRange();
1794 //              double                  thr                     = 1;
1795
1796         vtkImageReslice *imageReslice = vtkImageReslice::New();
1797 //EED
1798 //              double spc[3];
1799 //              imagedata->GetSpacing(spc);
1800 //              x = x*spc[0];
1801 //              y = y*spc[1];
1802 //              z = z*spc[3];
1803
1804         imageReslice->SetInput( imagedata );
1805         imageReslice->SetInformationInput(imagedata);
1806         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1807         imageReslice->SetResliceAxesOrigin(0,0,z);
1808         imageReslice->SetOutputDimensionality(2);
1809         imageReslice->SetInterpolationModeToLinear();
1810
1811         imagedata = imageReslice->GetOutput();
1812         imagedata->Update();
1813         imagedata->UpdateInformation();
1814
1815         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1816         cntVTK->SetInput( imagedata );
1817
1818         cntVTK->SetNumberOfContours( 1 );
1819         //cntVTK->SetValue( 0, vmin );
1820 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1821         cntVTK->SetValue( 1, isovalue );
1822 //      cntVTK->SetValue( 1, vmax );
1823         cntVTK->Update( );
1824         cntVTK->UpdateInformation();
1825
1826         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1827         cpd->SetInput( cntVTK->GetOutput( ) );
1828         cpd->ConvertLinesToPointsOff( );
1829         cpd->Update( );
1830         cpd->UpdateInformation();
1831
1832         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1833         conn->SetExtractionModeToClosestPointRegion( );
1834         //conn->SetMaxRecursionDepth( 3000 );
1835
1836         conn->SetInput( cpd->GetOutput( ) );
1837
1838         conn->SetClosestPoint( x, y, 0 );
1839         conn->Update( );
1840         conn->UpdateInformation();
1841
1842         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1843         cpd2->SetInput( conn->GetOutput( ) );
1844         cpd2->Update();
1845         cpd2->UpdateInformation();
1846
1847         vtkStripper* vtkstripper = vtkStripper::New( );
1848         vtkstripper->SetInput( cpd2->GetOutput() );
1849         vtkstripper->Update();
1850         vtkstripper->UpdateInformation();
1851
1852
1853         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1854
1855         polyDataResult->Update( );
1856         polyDataResult->UpdateInformation();
1857
1858 /* EED
1859 ofstream myfile;
1860 myfile.open ("c:/temp/example.txt");
1861 myfile << "\n";
1862 polyDataResult->Print(myfile);
1863 myfile << "-------------------------------------\n";
1864 polyDataResult->GetLines()->Print(myfile);
1865 myfile.close();
1866 */
1867
1868         cntVTK          -> Delete();
1869         cpd2            -> Delete();
1870         cpd                     -> Delete();
1871         conn            -> Delete();
1872
1873
1874 //--Calculating control points
1875
1876         std::vector<double> vecX;
1877         std::vector<double> vecY;
1878         std::vector<double> vecZ;
1879
1880         std::vector<double> vecCtrlPointX;
1881         std::vector<double> vecCtrlPointY;
1882         std::vector<double> vecCtrlPointZ;
1883
1884
1885         double *p;
1886         int ii,size=polyDataResult->GetNumberOfPoints();
1887         int id;
1888         for (ii=1;ii<=size;ii++)
1889         {
1890                 id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1891                 p       = polyDataResult->GetPoint(id);
1892 //              double x=p[0];
1893 //              double y=p[1];
1894                 vecX.push_back( p[0] );
1895                 vecY.push_back( p[1] );
1896                 vecZ.push_back( 900 );
1897 //                      vecZ.push_back( p[2] );
1898         }
1899
1900
1901         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1902         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1903
1904 //PROOFS
1905         /*if (methodRadiobox->GetSelection()==0){
1906                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1907         }
1908         if (methodRadiobox->GetSelection()==1){
1909                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1910         }
1911         if (methodRadiobox->GetSelection()==2){
1912                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1913                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1914         }*/
1915
1916         if (method==0){
1917                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1918         }
1919         else if (method==1){
1920                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1921         }
1922         else if (method==2){
1923                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1924                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1925         }
1926
1927         //--Adding contour to the system
1928
1929         std::vector<int> actualInstantVector;
1930         _instantPanel->getInstant( actualInstantVector );
1931         actualInstantVector[1]=z;
1932
1933         int j,sizeCtrPt = vecCtrlPointX.size();
1934         manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1935         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1936         if (sizeCtrPt>=3){
1937                 for (j=0 ; j<sizeCtrPt ; j++)
1938                 {
1939                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1940                 } // for
1941                 std::string theName;
1942                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1943                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1944                 bool addedModel = theName.compare("") != 0;
1945                 if( addedModel )
1946                 {
1947                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1948                         _theViewPanel->getSpacing(spc);
1949                         //Adding the manualContourControler to interface objects structure
1950                         //Adding the manualViewContour to interface objects structure
1951                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1952                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1953                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1954                 }       // if addedModel
1955         } // if sizeCtrPt
1956 }
1957 int wxContourMainFrame::GetImageDataSizeZ(){
1958         return _theViewPanel->GetImageDataSizeZ();
1959 }
1960
1961 void wxContourMainFrame::GetImageDataRange(double *range){
1962         _theViewPanel->GetImageDataRange(range);
1963 }
1964
1965 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
1966         //JCP 20-10-08 Undo redo implementation
1967         saveState();
1968         //JCP 20-10-08 Undo redo implementation
1969
1970         wxBusyCursor wait;
1971         int                                     x                                       = _theViewPanel->GetX();
1972         int                                     y                                       = _theViewPanel->GetY();
1973         int z;
1974         double porcent;
1975         wxString tmpString;
1976         double totalZ = maxZ-minZ+1;
1977         for( z=minZ ; z<=maxZ ; z++ )
1978         {
1979                 porcent = 100.0* (z-minZ)/totalZ;
1980                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
1981                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
1982                 //_staticTextSegmentation->SetLabel(tmpString);
1983                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
1984         }
1985         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
1986         RefreshInterface();
1987 }
1988
1989
1990 //Creates a reference line to be used as the axis of the mirroring
1991 void wxContourMainFrame::referenceLine()
1992 {
1993         if (_refLineControl==NULL)
1994         {
1995                 wxBusyCursor wait;
1996                 double spc[3];
1997
1998                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
1999                 vtkimagedata->GetSpacing(spc);
2000
2001                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2002
2003                 _refLineControl = new manualLineControler();
2004                 _refLineModel   = new manualContourModelLine();
2005                 _refLineView = new manualViewLine();
2006                 _refLineView->SetModel( _refLineModel );
2007                 _refLineView->SetWxVtkBaseView( viewer2D );
2008                 _refLineView->SetRange( 2 );
2009                 _refLineView->SetZ( 1200 );
2010
2011                 _refLineView->SetSpacing(spc);
2012
2013                 _refLineView->SetColorNormalContour(0, 0, 1);
2014                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2015                 _refLineView->SetWidthLine(4);
2016
2017                 _refLineControl->SetModelView( _refLineModel , _refLineView );
2018                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2019                 style->AddInteractorStyleMaracas( _refLineControl );
2020                 _refLineModel->SetCloseContour(false);
2021                 _refLineControl->CreateNewManualContour();
2022
2023 //AD: Inicializar el mirroring con una linea ya pintada
2024         /*
2025                 double z = _refLineControl->GetZ();
2026
2027                 int imageDim[3];
2028                 image->GetDimensions(imageDim);
2029                 double x = (double) imageDim[0]/2;
2030                 double y1 = (double) (imageDim[1]/2)+15;
2031                 double y2 = (double) (imageDim[1]/2)-15;
2032
2033                 _refLineControl->AddPoint(x,y1,z);
2034                 _refLineControl->AddPoint(x,y2,z);
2035                 _refLineControl->SetCompleteCreation(true);
2036
2037                 _refLineModel->AddPoint(x,y1,z);
2038                 _refLineModel->AddPoint(x,y2,z);
2039                 _refLineModel->UpdateSpline();
2040
2041                 _refLineView->UpdateViewPoint(0);
2042                 _refLineView->UpdateViewPoint(1);
2043         */
2044
2045                 _refLineControl->SetActive(true);
2046                 _refLineView->RefreshContour();
2047         }
2048 }
2049
2050 //Hides the referenceLine
2051 void wxContourMainFrame::refLineHide()
2052 {
2053         if (_refLineControl!=NULL)
2054         {
2055                 if (_refLineControl->GetActive())
2056                 {
2057                         _refLineView->RemoveCompleteContourActor();
2058                         _refLineControl->SetEditable(false);
2059                         _refLineControl->SetActive(false);
2060
2061                         RefreshInterface();
2062                 }
2063         }
2064 }
2065
2066 //Shows the referenceLine
2067 void wxContourMainFrame::refLineShow()
2068 {
2069         if (_refLineControl!=NULL)
2070         {
2071                 if (_refLineControl->GetActive()==false)
2072                 {
2073                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2074
2075                         _refLineView->SetModel( _refLineModel );
2076                         _refLineView->SetWxVtkBaseView( viewer2D );
2077                         _refLineView->SetRange( 2 );
2078                         _refLineView->SetZ( 1200 );
2079
2080                         _refLineControl->SetModelView( _refLineModel , _refLineView );
2081                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2082                         style->AddInteractorStyleMaracas( _refLineControl );
2083                         _refLineControl->CreateNewManualContour();
2084                         _refLineControl->SetActive(true);
2085                         _refLineView->RefreshContour();
2086
2087                         RefreshInterface();
2088                 }
2089         }
2090 }
2091
2092 void wxContourMainFrame::refLineChangeWidth(int width)
2093 {
2094         _refLineView->SetWidthLine(width);
2095         _refLineView->RefreshContour();
2096
2097         RefreshInterface();
2098 }
2099
2100
2101 void wxContourMainFrame::onMirror()
2102 {
2103         //AD:02-09
2104         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2105         std::vector<std::string> filterCurrentSelection;
2106
2107         std::vector<int> tempVector;
2108         _instantPanel->getInstant( tempVector );
2109     _performingOperation->reset();
2110         _performingOperation->setStartCommand( COPY );
2111         _performingOperation->setStartOperationInstantVector( tempVector );
2112         _performingOperation->setKeyNamesOperationElems( currentSelection );
2113
2114         char theStartCommand = _performingOperation->getStartCommand();
2115         if (  theStartCommand == COPY )
2116         {
2117                 //JCP 20-10-08 Undo redo implementation
2118                 saveState();
2119                 //JCP 20-10-08 Undo redo implementation
2120                 std::vector<int> tempVector;
2121                 _instantPanel->getInstant( tempVector );
2122                 _performingOperation->setEndOperationInstantVector ( tempVector );
2123                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2124                 int i,size = elems.size();
2125                 for( i=0; i<size; i++ )
2126                 {
2127                         createMirrorContourOf( elems[i], tempVector, i>0 );
2128                 }
2129         }
2130
2131         //deleteContour( _refName );
2132         //_refName = "";
2133 }
2134
2135
2136 void wxContourMainFrame::showAxis(bool show)
2137 {
2138         _theViewPanel->SetVisibleAxis(show);
2139         _theViewPanel->Refresh();
2140 }
2141
2142
2143 void wxContourMainFrame::onRigidPressed(){
2144         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2145         int elementsSelected = currentSelection.size();
2146
2147         if ( elementsSelected >= 1 ){
2148                 //JCP 20-10-08 Undo redo implementation
2149                 saveState();
2150                 //JCP 20-10-08 Undo redo implementation
2151
2152                 std::vector<int> tempVector;
2153                 _instantPanel->getInstant( tempVector );
2154                 Instant instant(&tempVector);
2155
2156                 int i , size=currentSelection.size();
2157                 for ( i=0 ; i<size ; i++ )
2158                 {
2159                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2160                 } // i
2161         }
2162 }
2163
2164 void wxContourMainFrame::onWidthOfContour(double width){
2165
2166         _theViewPanel->removeSceneContours();
2167         _theViewPanel->SetWidthContour(width);
2168
2169         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2170
2171         RefreshInterface();
2172 }
2173
2174 int wxContourMainFrame::getColorWindow()
2175 {
2176         /*
2177         double range[2];
2178         vtkImageData * img = getImageData();
2179         img->GetScalarRange(range);
2180
2181         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2182
2183         return (int)range[1];
2184         */
2185         return _theViewPanel->getColorWindow();
2186 }
2187
2188 int wxContourMainFrame::getWindowLevel()
2189 {
2190         /*
2191         double range[2];
2192         vtkImageData * img = getImageData();
2193         img->GetScalarRange(range);
2194
2195         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2196
2197         return (int)range[1];
2198         */
2199         return _theViewPanel->getWindowLevel();
2200 }
2201
2202 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
2203         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2204
2205         RefreshInterface();
2206 }
2207
2208 void wxContourMainFrame::onInterpolation(bool interpolate){
2209         _theViewPanel->onInterpolation(interpolate);
2210         RefreshInterface();
2211 }
2212
2213 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
2214         _instantPanel->setConceptValue( name, actual );
2215 }
2216
2217 void wxContourMainFrame::resetAppend(){
2218         kernelManager->resetAppend();
2219
2220 }
2221
2222 void wxContourMainFrame::onSpreadAdd(){
2223         std::vector<double> vecX;
2224         std::vector<double> vecY;
2225         std::vector<double> vecZ;
2226         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2227
2228         std::vector<int> tempVector;
2229         _instantPanel->getInstant( tempVector );
2230
2231         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2232
2233         interfMainPanel::getInstance()->appendStringSpread(val);
2234
2235 }
2236
2237 void wxContourMainFrame::onSpreadGo(int type){
2238
2239         //JCP 20-10-08 Undo redo implementation
2240         saveState();
2241         //JCP 20-10-08 Undo redo implementation
2242
2243         wxBusyCursor wait;
2244         std::vector<double> vecCtrlPointX;
2245         std::vector<double> vecCtrlPointY;
2246         std::vector<double> vecCtrlPointZ;
2247         double  minZ,maxZ;
2248         int z;
2249
2250         std::vector<int> tempVector;
2251         _instantPanel->getInstant( tempVector );
2252 //              tempVector[1];
2253
2254         kernelManager->getMaxMinZ(&minZ,&maxZ);
2255 //JSTG_16-07-08_----------------------------------------------------------------
2256         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2257         kernelManager->CalculeSplinePropagation();
2258
2259         double          totalZ = maxZ-minZ+1;
2260         double          porcent;
2261         wxString        tmpString;
2262 //--------------------------------------------------------------------
2263         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2264         {
2265                 porcent = 100.0* (z-minZ)/totalZ;
2266                 int numero = (int)(z-minZ+1)/(int)totalZ;
2267                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2268
2269                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2270
2271                 int typeofcontour = 1;
2272                 std::string theName;
2273                 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2274
2275                 if( manModelContour!=NULL ){
2276                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2277                         this->_theViewPanel->getSpacing(spc);
2278                         //Adding the manualContourControler to interface objects structure
2279                         //Adding the manualViewContour to interface objects structure
2280                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2281                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2282                 } // if addedModel
2283         }
2284         if(z > maxZ){
2285                 porcent = 100.0;
2286                 int numero = (int)(z-minZ+1)/(int)totalZ;
2287                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2288
2289                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2290         }// for z
2291         //RefreshInterface();
2292 }
2293
2294 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2295
2296 }
2297
2298 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2299         std::vector<int> tempVector;
2300         _instantPanel->getInstant(tempVector);
2301         //Asignation of slide number should be different ex by name
2302         tempVector[1]=slide;
2303         return kernelManager->getOutlinesNameAtInstant(tempVector);
2304 }
2305
2306
2307 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2308 {
2309         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2310 }
2311
2312
2313 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2314 {
2315 //EED01Juillet2009      GenerateContourExtractData();
2316
2317         wxString tempString;
2318         int maxContourGroup     =       0;
2319
2320         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2321
2322         std::vector<manualBaseModel*> lstManConMod;
2323         std::vector<manualBaseModel*> lstManConModTmp;
2324         std::vector<manualBaseModel*> lstManConModExp;
2325         std::vector<double> pLstValue;
2326         std::vector<double> pLstValuePosX;
2327         std::vector<double> pLstValuePosY;
2328         std::vector<double> pLstValuePosZ;
2329
2330         int             resultSize;
2331         int             resultGrayRangeCount;
2332         double  resultMin;
2333         double  resultMax;
2334         double  resultAverage;
2335         double  resultStandardeviation;
2336
2337         std::vector<int> tempVector;
2338         _instantPanel->getInstant( tempVector );
2339
2340 //EED01Juillet2009      vtkImageData *imagedata = _theViewPanel->getImageData();
2341 //      int sizeZ = _theViewPanel->GetImageDataSizeZ();
2342         int z;
2343         int ii,sizeLstContourThings;
2344
2345
2346         int minZ,maxZ;
2347         double totalZ;
2348         double porcent;
2349         wxString tmpString;
2350
2351
2352         if (selection==0 ) // actual slice
2353         {
2354                 int actualSlice = tempVector[1];
2355                 minZ    = actualSlice;
2356                 maxZ    = actualSlice;
2357         }       else  {  // slice range
2358                 minZ    = minimumZ;
2359                 maxZ    = maximumZ;
2360         }
2361
2362
2363         totalZ  = maxZ-minZ+1;
2364 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2365
2366         _contourextractdata->InitVolumeStatistics();
2367
2368 // For each slice..
2369         for ( z=minZ ; z<=maxZ ; z++ )
2370         {
2371
2372                 porcent = 100.0* (z-minZ)/totalZ;
2373                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2374
2375                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2376                 //_staticTextInformation->SetLabel(tmpString);
2377
2378                 //Extraction data from contours of each slice
2379                 _contourextractdata->SetZtoBeAnalys(z);
2380
2381                 tempVector[1]=z;
2382                 Instant instant(&tempVector);
2383                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2384                 sizeLstContourThings = lstContourThings.size();
2385
2386                 lstManConMod.clear();
2387                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2388                 {
2389                         ContourThing **contourthing = lstContourThings[ii];
2390                         lstManConMod.push_back( (*contourthing)->getModel() );
2391                 }
2392
2393                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2394
2395                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2396                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2397                 //_grid->SetRowLabelValue(z, tempString );
2398 //EED004
2399                 int iContourGroup,sizeContourGroup;
2400                 if (typeContourGroup==3) // contour separete
2401                 {
2402                         sizeContourGroup=lstManConModExp.size();
2403                         if ( maxContourGroup<sizeContourGroup )
2404                         {
2405                                 maxContourGroup=sizeContourGroup;
2406                         }
2407                 } else {  // contour AND OR XOR
2408                         sizeContourGroup=1;
2409                         maxContourGroup=1;
2410                 }
2411
2412                 int tmpIntA;
2413
2414                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2415                         lstManConModTmp.clear();
2416
2417
2418
2419                         if (typeContourGroup==3) // contour separete
2420                         {
2421                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2422                         } else {  // contour AND OR XOR
2423                                 lstManConModTmp = lstManConModExp;
2424                         }
2425
2426                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2427                         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2428
2429                         pLstValue.clear();
2430                         pLstValuePosX.clear();
2431                         pLstValuePosY.clear();
2432                         pLstValuePosZ.clear();
2433
2434
2435                         int numberOfPixels;
2436                         _contourextractdata->GetValuesInsideCrown(  &numberOfPixels,
2437                                                                                                                 &pLstValue,
2438                                                                                                                 &pLstValuePosX,
2439                                                                                                                 &pLstValuePosY,
2440                                                                                                                 &pLstValuePosZ);
2441
2442                         resultSize=numberOfPixels;
2443                         // Statistics of each slice.
2444                         _contourextractdata->Statistics( &pLstValue,
2445                                                                                         grayRangeMin,
2446                                                                                         grayRangeMax,
2447                                                                                         &resultGrayRangeCount,
2448                                                                                         &resultSize,
2449                                                                                         &resultMin,
2450                                                                                         &resultMax,
2451                                                                                         &resultAverage,
2452                                                                                         &resultStandardeviation);
2453
2454                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2455                         {
2456                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2457                         }
2458
2459                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2460
2461                         tempString.Printf(_T("%d"),numberOfPixels);
2462
2463                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2464
2465                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2466                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2467
2468                         tempString.Printf(_T("%f"),resultMin);
2469                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2470
2471                         tempString.Printf(_T("%f"),resultMax);
2472                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2473
2474                         tempString.Printf(_T("%f"),resultAverage);
2475                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2476
2477                         tempString.Printf(_T("%f"),resultStandardeviation);
2478                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2479
2480
2481                 } // for iContourGroup
2482         } // for z
2483
2484         // Print Volume Statistics
2485
2486
2487         int             vol_rCountRange;
2488         int             vol_rsize;
2489         double  vol_minValue;
2490         double  vol_maxValue;
2491         double  vol_average;
2492         double  vol_standardeviation;
2493
2494         if (selection!=0 ) // actual slice
2495         {
2496
2497                 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2498                                                                                                  &vol_minValue, &vol_maxValue,
2499                                                                                                  &vol_average, &vol_standardeviation);
2500
2501                 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2502
2503                 tempString.Printf(_T("%d"),vol_rsize);
2504                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2505
2506                 tempString.Printf(_T("%d"),vol_rCountRange);
2507                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2508
2509                 tempString.Printf(_T("%f"),vol_minValue);
2510                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2511
2512                 tempString.Printf(_T("%f"),vol_maxValue);
2513                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2514
2515                 tempString.Printf(_T("%f"),vol_average);
2516                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2517
2518                 tempString.Printf(_T("%f"),vol_standardeviation);
2519                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2520         }
2521         //-----------------------------------------
2522
2523         int iTitleGroup;
2524         wxString tmpTitleString;
2525         int tmpIntB;
2526         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2527         {
2528                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2529                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2530                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2531
2532                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2533                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2534                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2535                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2536                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2537                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2538                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2539         }// for title
2540         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2541 }
2542
2543 //AD: 29-05-09
2544 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2545         int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2546 {
2547         if (XYZValues)
2548         {
2549                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2550         }
2551
2552         if (contourImage)
2553         {
2554                 vtkImageData * mask;
2555                 vtkImageData * value;
2556                 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2557                 this->SaveImageResult( directory , namefile, mask, value);
2558         }
2559
2560         if (statistics)
2561         {
2562                 std::ostringstream name;
2563                 name << filename << ".xls";
2564
2565
2566                 FILE *pFile=fopen(name.str().c_str(),"w+");
2567
2568
2569                 wxString tmpString;
2570                 int i,j,maxX;
2571
2572 //              int sizeZ = _theViewPanel->GetImageDataSizeZ();
2573 //              int maxY=sizeZ+2;
2574
2575                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2576
2577                 // -- Title --
2578                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2579                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2580                 {
2581                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2582                                 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2583                 }
2584                 fprintf(pFile,"\n\n" );
2585
2586
2587
2588                 if (selection==0 ) // actual slice
2589                 {
2590                         std::vector<int> tempVector;
2591                         _instantPanel->getInstant( tempVector );
2592                         int actualSlice = tempVector[1];
2593                         minZ    = actualSlice;
2594                         maxZ    = actualSlice;
2595                 }
2596
2597                 // Stadistics...
2598                 for ( j=minZ; j<=maxZ ; j++)
2599                 {
2600                         fprintf(pFile,"%d\t" , j );
2601                         for (i=0 ; i<maxX ; i++){
2602                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2603                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2604                         } // for i
2605                         fprintf(pFile,"\n"  );
2606                 } // for j
2607
2608
2609                 // Total of stadistics.....
2610                 if (selection!=0)
2611                 {
2612                         fprintf(pFile,"\n Total:\t"  );
2613                         for (i=0 ; i<maxX ; i++){
2614                                 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2615                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2616                         } // for i
2617                         fprintf(pFile,"\n"  );
2618                 }
2619
2620                 fclose(pFile);
2621         }
2622 }
2623
2624 //AD: 29-05-09
2625 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2626 {
2627         wxBusyCursor wait;
2628 //EED01Juillet2009      GenerateContourExtractData();
2629
2630         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2631         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2632
2633         std::vector<manualBaseModel*> lstManConMod;
2634         std::vector<manualBaseModel*> lstManConModTmp;
2635         std::vector<manualBaseModel*> lstManConModExp;
2636         std::vector<double> pLstValue;
2637         std::vector<double> pLstValuePosX;
2638         std::vector<double> pLstValuePosY;
2639         std::vector<double> pLstValuePosZ;
2640
2641         std::vector<int> tempVector;
2642         _instantPanel->getInstant( tempVector );
2643
2644 //EED01Juillet2009      vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2645         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2646         int z;
2647         int ii,sizeLstContourThings;
2648
2649
2650         int minZ,maxZ;
2651         double totalZ;
2652         double porcent;
2653         wxString tmpString;
2654         minZ    = 0;// _mbarrange->GetStart();
2655         maxZ    = sizeZ;//_mbarrange->GetEnd();
2656         totalZ  = maxZ-minZ+1;
2657
2658 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2659
2660 // For each slice..
2661         for ( z=0 ; z<sizeZ ; z++)
2662         {
2663
2664                 porcent = 100.0* (z-minZ)/totalZ;
2665
2666                 tmpString.Printf(_T("Saving Values"));
2667                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2668                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2669                 //_staticTextInformation->SetLabel(tmpString);
2670
2671
2672                 //Extraction data from contours of each slice
2673                 _contourextractdata->SetZtoBeAnalys( z);
2674
2675                 tempVector[1]=z;
2676                 Instant instant(&tempVector);
2677                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2678                 sizeLstContourThings = lstContourThings.size();
2679
2680                 lstManConMod.clear();
2681                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2682                 {
2683                         ContourThing **contourthing = lstContourThings[ii];
2684                         lstManConMod.push_back( (*contourthing)->getModel() );
2685                 }
2686                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2687
2688
2689 //EED004
2690
2691                 int iContourGroup,sizeContourGroup;
2692                 if (typeContourGroup==3) // contour separete
2693                 {
2694                         sizeContourGroup=lstManConModExp.size();
2695                 } else {  // contour AND OR XOR
2696                         sizeContourGroup=1;
2697                 }
2698
2699                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2700                         lstManConModTmp.clear();
2701                         if (typeContourGroup==3) // contour separete
2702                         {
2703                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2704                         } else {  // contour AND OR XOR
2705                                 lstManConModTmp = lstManConModExp;
2706                         }
2707
2708                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2709
2710                         pLstValue.clear();
2711                         pLstValuePosX.clear();
2712                         pLstValuePosY.clear();
2713                         pLstValuePosZ.clear();
2714                         int numberOfPixels;
2715                         _contourextractdata->GetValuesInsideCrown(      &numberOfPixels,
2716                                                                                                                 &pLstValue,
2717                                                                                                                 &pLstValuePosX,
2718                                                                                                                 &pLstValuePosY,
2719                                                                                                                 &pLstValuePosZ);
2720
2721                         std::string temp = directory + "/" + namefile + "-slice";
2722                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2723                         temp = temp + ".txt";
2724
2725                         // LG 14/01/09 : using crea
2726                         wxString filename = crea::std2wx(temp);
2727                         /*filename.Printf(_T("%s"),directory.c_str());
2728                         filename.append(_T("\\"));
2729                         filename.append(_T("%s"),namefile.c_str());
2730                         filename.append(_T("-slice"));
2731                         filename.append(_T("%d"),z);
2732                         filename.append(_T("-cont"));
2733                         filename.append(_T("%d"),iContourGroup);
2734                         filename.append(_T(".txt"));*/
2735                         //                      filename.Printf(temp.c_str());
2736
2737
2738
2739                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2740                         fprintf(pFile,"value \t x \t y \t z\n"  );
2741                         int iLstValue,sizeLstValue=pLstValue.size();
2742                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2743                         {
2744                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2745                         }
2746                         fclose(pFile);
2747                 } // for  iContourGroup
2748         } // for z
2749         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2750         //_staticTextInformation->SetLabel( _T("") );
2751
2752 }
2753
2754 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2755         wxBusyCursor wait;
2756 //EED01Juillet2009      GenerateContourExtractData();
2757
2758         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2759         if (typeContourGroup==3)
2760         {
2761                 typeContourGroup=1;
2762         }
2763         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2764
2765         std::vector<manualBaseModel*> lstManConMod;
2766         std::vector<manualBaseModel*> lstManConModTmp;
2767         std::vector<manualBaseModel*> lstManConModExp;
2768
2769         std::vector<int> tempVector;
2770         _instantPanel->getInstant( tempVector );
2771
2772     vtkImageData *imagedata = _theViewPanel->getImageData();
2773         int ext[6];
2774         imagedata->GetExtent(ext);
2775         int sizeZimage = ext[5]-ext[4]+1;
2776         int z;
2777         int ii,sizeLstContourThings;
2778
2779
2780         double totalZ;
2781         double porcent;
2782
2783         wxString tmpString;
2784
2785
2786         if (selection==0 ) // actual slice
2787         {
2788                 int actualSlice = tempVector[1];
2789                 minZ    = actualSlice;
2790                 maxZ    = actualSlice;
2791         }
2792
2793         totalZ  = maxZ-minZ;
2794
2795 //EED01Juillet2009      _contourextractdata->SetImage( imagedata);
2796
2797         // cleanning image before range
2798         for (z=0; z<minZ; z++){
2799                 _contourextractdata->ResetImageResult(z);
2800         }
2801         // cleanning image after range
2802         for (z=maxZ+1; z<sizeZimage; z++){
2803                 _contourextractdata->ResetImageResult(z);
2804         }
2805
2806
2807 // For each slice..
2808         for ( z=minZ ; z<=maxZ ; z++)
2809         {
2810
2811                 porcent = 100.0* (z-minZ)/totalZ;
2812                 tmpString.Printf(_T("Saving Values"));
2813                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2814                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2815
2816                 //Extraction data from contours of each slice
2817                 _contourextractdata->SetZtoBeAnalys( z);
2818
2819                 tempVector[1]=z;
2820                 Instant instant(&tempVector);
2821                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2822                 sizeLstContourThings = lstContourThings.size();
2823
2824                 lstManConMod.clear();
2825                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2826                 {
2827                         ContourThing **contourthing = lstContourThings[ii];
2828                         lstManConMod.push_back( (*contourthing)->getModel() );
2829                 }
2830                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2831
2832
2833                 int iContourGroup,sizeContourGroup;
2834                 if (typeContourGroup==3) // contour separete
2835                 {
2836                         sizeContourGroup=lstManConModExp.size();
2837                 } else {  // contour AND OR XOR
2838                         sizeContourGroup=1;
2839                 }
2840
2841                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2842                         lstManConModTmp.clear();
2843                         if (typeContourGroup==3) // contour separete
2844                         {
2845                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2846                         } else {  // contour AND OR XOR
2847                                 lstManConModTmp = lstManConModExp;
2848                         }
2849
2850                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2851                         _contourextractdata->CalculateImageResult(); // with actual Z
2852
2853                 } // for  iContourGroup
2854         } // for z
2855
2856         (*value) = _contourextractdata->GetVtkImageValueResult();
2857         (*mask)  = _contourextractdata->GetVtkImageMaskResult();
2858
2859 }
2860
2861 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2862 {
2863
2864         std::string temp = directory + "/" + namefile + "-Value.mhd";
2865
2866         wxString filename = crea::std2wx(temp);
2867         // LG
2868         //      filename.Printf(_T(temp.c_str()));
2869         //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2870         /*filename.Printf(_T("%s"),directory.c_str());
2871         filename.append(_T("\\"));
2872         filename.append(_T("%s"),namefile.c_str());
2873         filename.append(_T("-Value.mhd"));*/
2874
2875 // Image Value
2876         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2877         writerValueImage->SetInput( value );
2878         writerValueImage->SetFileName( (const char *)filename.mb_str() );
2879         writerValueImage->SetFileDimensionality( 3 );
2880         writerValueImage->Write( );
2881
2882 // Image Mask
2883         //              filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2884         temp = directory + "/" + namefile + "-Mask.mhd";
2885
2886         // LG 14/01/09 : using crea
2887         filename = crea::std2wx(temp);
2888         //      filename.Printf(_T(temp.c_str()));
2889
2890         /*filename.Printf(_T("%s"),directory.c_str());
2891         filename.append(_T("\\"));
2892         filename.append(_T("%s"),namefile.c_str());
2893         filename.append(_T("-Mask.mhd"));*/
2894
2895         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2896         writerMaskImage->SetInput( mask );
2897         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2898         writerMaskImage->SetFileDimensionality( 3 );
2899         writerMaskImage->Write( );
2900
2901         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2902
2903 }
2904
2905
2906
2907 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2908         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2909                 _theViewPanel->setActualVertical( value);
2910         }
2911         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
2912                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2913         }
2914
2915         changeInstant();
2916 }
2917
2918 void wxContourMainFrame::onSnakePressed(){
2919         std::vector<double> vecX;
2920         std::vector<double> vecY;
2921         std::vector<double> vecZ;
2922         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2923
2924         if (vecX.size()!=0){
2925                 std::vector<int> tempVector;
2926                 _instantPanel->getInstant( tempVector );
2927                 int i,size=vecZ.size();
2928                 int actualSlice = tempVector[1];
2929                 for ( i=0 ; i<size ; i++ )
2930                 {
2931                         vecZ[i] = actualSlice;
2932                 } // for
2933
2934                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2935                 wxPanel* panel = new wxPanel(dialog,-1);
2936                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2937          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2938                 dialog->ShowModal();
2939         } // if
2940
2941 }
2942
2943 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2944         std::string filename = kernelManager->getCurrentFileName();
2945         if(filename.compare("")!=0){
2946                 saveFileWithContours(filename);
2947         }else{
2948                 onSave();
2949         }
2950 }
2951 void wxContourMainFrame::ShowToolsPanel(bool show){
2952         _pannew->Show(show);
2953 }
2954
2955
2956
2957 void wxContourMainFrame::SetContourGroup(int contourGroup)
2958 {
2959         _contourGroup = contourGroup;
2960 }
2961
2962
2963 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
2964 {
2965
2966         if      (_viewMaskImagePanel==NULL)
2967         {
2968                 _contourextractdata = new ContourExtractData(true);
2969                 _contourextractdata->SetImage( _theViewPanel->getImageData() );
2970
2971 //              double range[2];
2972 //              _theViewPanel->getImageData()->GetScalarRange(range);
2973                 //int min = (int)floor (range[0]);
2974                 //int max = (int)ceil (range[1]);
2975                 int min = 254;
2976                 int max = 256;
2977
2978                 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , 0);
2979                 _viewMaskImage = new ThresholdImageView();
2980                 _viewMaskImage->SetImage(_contourextractdata->GetVtkImageMaskResult() );
2981                 _viewMaskImage->SetminMaxValue( min, max);
2982                 _viewMaskImage->SetBaseColor( 0,0,1 );
2983                 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
2984                 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
2985
2986         }
2987         return _viewMaskImagePanel;
2988 }
2989
2990 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
2991 {
2992         if      (_viewThresholdImagePanel==NULL)
2993         {
2994                 double range[2];
2995                 _theViewPanel->getImageData()->GetScalarRange(range);
2996                 int min = (int)floor (range[0]);
2997                 int max = (int)ceil (range[1]);
2998                 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max , 1);
2999                 _viewThresholdImage = new ThresholdImageView();
3000                 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3001                 _viewThresholdImage->SetminMaxValue( min, max);
3002                 _viewThresholdImage->SetBaseColor( 1,0,0 );
3003                 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3004                 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3005         }
3006         return _viewThresholdImagePanel;
3007 }
3008
3009 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3010 int wxContourMainFrame::getType ()
3011 {
3012         int tipo = 0;
3013         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3014
3015         if(!currentSelection.empty())
3016         {
3017                 std::string cloneName = currentSelection [0];
3018                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3019                 tipo = manualModel-> GetTypeModel();
3020         }
3021         return tipo;
3022 }
3023
3024 double wxContourMainFrame::getContourSizeInPixels()
3025 {
3026         double contourSize = 0;
3027
3028         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();        if(!currentSelection.empty())
3029         if(!currentSelection.empty())
3030         {
3031                 std::string cloneName = currentSelection [0];
3032
3033                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3034                 contourSize = manualModel-> GetPathSize();
3035         }
3036         return contourSize;
3037 }
3038 manualBaseModel * wxContourMainFrame::getContour ()
3039 {
3040         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3041
3042         if(!currentSelection.empty())
3043         {
3044                 std::string cloneName = currentSelection [0];
3045                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3046                 return manualModel;
3047         }
3048         return NULL;
3049 }
3050 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3051 {
3052         std::string labelAscii(label.ToAscii());
3053         int pos = labelAscii.find(" ");
3054
3055         int j;
3056
3057         for (j=0 ; pos != string::npos;j++)
3058         {
3059                 labelAscii.replace( pos, 1, "_" );
3060                 pos= labelAscii.find(" ");
3061         }
3062
3063         manualModel -> SetLabel(labelAscii);
3064 }
3065 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3066 {
3067         double sizeInPixel = manualModel ->GetPathSize();
3068         double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3069         double realContourSize = sizeInPixel*onePixelRealSize;
3070         manualModel ->SetRealSize(realContourSize);
3071 }
3072
3073 double wxContourMainFrame::onePixelSize( double value)
3074 {
3075         return _onePixelSize = value;
3076 }
3077
3078 std::string wxContourMainFrame::GetFileLocation()
3079 {
3080         return _fileLocation;
3081 }
3082
3083 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3084 {
3085         _fileLocation = newFileLocation;
3086         std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3087 }
3088 //------------------------------------------------------------------------------------------------------------