lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.h

   1 #ifndef __wxContourMainFrame_h_INCLUDED_H__
   2 #define __wxContourMainFrame_h_INCLUDED_H__
   3
   4
   5 // -----------------------------------------------------------------------------------------------------------
   6 // WX headers inclusion.
   7 // For compilers that support precompilation, includes <wx/wx.h>.
   8 // -----------------------------------------------------------------------------------------------------------
   9
  10 #include <wx/wxprec.h>
  11 #ifdef __BORLANDC__
  12 #pragma hdrstop
  13 #endif
  14 #ifndef WX_PRECOMP
  15 #include <wx/wx.h>
  16 #endif
  17
  18
  19 //------------------------------------------------------------------------------------------------------------
  20 // Includes
  21 //------------------------------------------------------------------------------------------------------------
  22 #include "wx/aui/aui.h"
  23
  24 #include "interfMainPanel.h"
  25 #include "KernelManagerContour.h"
  26
  27 //#include "wxVtkBaseView_SceneManager.h"
  28 #include "wxInstantChooserPanel.h"
  29 #include "wxContourViewPanel.h"
  30
  31 //#include "ContourWorkspace.h"
  32 #include "ContourExtractData.h"
  33 #include "PerformingOperation.h"
  34
  35 #include "manualLineControler.h"
  36 #include "manualContourModelLine.h"
  37 #include "manualViewLine.h"
  38
  39 #include "ThresholdImageView.h"
  40 #include "ThresholdImageViewPanel.h"
  41
  42
  43 //#include "ContourThing.h"
  44 //#include "AxeThing.h"
  45 //#include "ImageSourceThing.h"
  46 //#include "ImageSectionThing.h"
  47 //#include "InstantMembersNameList.h"
  48 //#include "OutlineGroup.h"
  49 //#include "SomeEnvironment.h"
  50 //#include "ContourWorkspace.h"
  51 //#include "ContourWrap_ViewControl.h"
  52 //#include "Instant.h"
  53 //#include "PerformingOperation.h"
  54
  55 //#include "ContourThing.h"
  56
  57 //#include "OutlineModelManager.h"
  58
  59 //#include "wxContour_ButtonsBar.h"
  60 //#include "wxContour_ControlPanel.h"
  61
  62 //#include "wxContour_Grid.h"
  63 //#include "wxContour_DrawToolsPanel.h"
  64 //#include "wxContour_OperationsToolsPanel.h"
  65 //#include "wxContour_AutomaticFormsToolsPanel.h"
  66 //#include "wxContour_StandardToolsPanel.h"
  67 //#include "wxContour_EdtionToolsPanel.h"
  68 //#include "wxContour_ListViewPanel.h"
  69
  70
  71 //ITK
  72 #include "itkImage.h"
  73 #include "itkGeodesicActiveContourLevelSetImageFilter.h"
  74
  75 #include "itkCurvatureAnisotropicDiffusionImageFilter.h"
  76 #include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
  77 #include "itkSigmoidImageFilter.h"
  78 #include "itkFastMarchingImageFilter.h"
  79 #include "itkRescaleIntensityImageFilter.h"
  80 #include "itkBinaryThresholdImageFilter.h"
  81 #include "itkZeroCrossingImageFilter.h"
  82 #include "itkCastImageFilter.h"
  83
  84 #include "itkImageFileWriter.h"
  85
  86 #include "itkImageToVTKImageFilter.h"
  87 #include "itkVTKImageToImageFilter.h"
  88
  89 //VTK
  90 #include <vtkImageSeedConnectivity.h>
  91 #include <vtkImageMarchingCubes.h>
  92 #include "vtkContourFilter.h"
  93 #include "vtkMarchingContourFilter.h"
  94 #include "vtkPolyDataConnectivityFilter.h"
  95 #include "vtkCleanPolyData.h"
  96 #include "vtkImageReslice.h"
  97 #include "vtkMetaImageWriter.h"
  98 #include "vtkImageData.h"
  99 #include "vtkTransform.h"
 100
 101 #include "vtkCamera.h"
 102 #include "vtkImageActor.h"
 103 #include <vtkImageMapToColors.h>
 104 #include <vtkLookupTable.h>
 105 #include <vtkCommand.h>
 106
 107 //#include "vtkMetaImageReader.h"
 108
 109 //------------------------------------------------------------------------------------------------------------
 110 // Events declaration
 111 //------------------------------------------------------------------------------------------------------------
 112
 113 //BEGIN_DECLARE_EVENT_TYPES()
 114 //END_DECLARE_EVENT_TYPES()
 115
 116 /** file wxContourMainFrame.h */
 117
 118
 119 //------------------------------------------------------------------------------------------------------------
 120 // Class definition
 121 //------------------------------------------------------------------------------------------------------------
 122 class interfMainPanel;
 123 class wxContourMainFrame : public wxPanel {
 124
 125         public:
 126
 127         //------------------------------------------------------------------------------------------------------------
 128         // Constructors & Destructors
 129         //------------------------------------------------------------------------------------------------------------
 130
 131
 132         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
 133         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 134
 135         ~wxContourMainFrame();
 136
 137         //------------------------------------------------------------------------------------------------------------
 138         // Creational and initialization methods
 139         //------------------------------------------------------------------------------------------------------------
 140
 141         void setVectImages(std::vector<vtkImageData*> imgs);
 142
 143         bool configurePanels( );
 144
 145         bool addNewPanel(wxPanel* panel);
 146
 147         wxAuiNotebook * createNotebook();
 148
 149         void createInstantChooserPanel(wxAuiNotebook * parent);
 150
 151         void createViewPanel(wxAuiNotebook * parent);
 152
 153         void createInstantChooserPanel(wxWindow * parent);
 154
 155         void createViewPanel(wxWindow * parent);
 156
 157         void setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel );
 158
 159         void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
 160
 161         void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
 162
 163         void ShowToolsPanel(bool show);
 164
 165
 166 //      void setButtonsBar(  wxContour_ButtonsBar * theButtonsBar );
 167 //      void setGrid(  wxContour_Grid * theGridPanel );
 168 //      void setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel );
 169 //      void setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theDrawToolsPanel );
 170 //      void setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel );
 171 //      void setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel );
 172 //      void setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel );
 173 //      void setListViewPanel(  wxContour_ListViewPanel * theListViewPanel );
 174
 175
 176         ////------------------------------------------------------------------------------------------------------------
 177         //// Methods for capturing events
 178         ////------------------------------------------------------------------------------------------------------------
 179
 180
 181         ////------------------------------------------------------------------------------------------------------------
 182         ////  Model management methods
 183         ////------------------------------------------------------------------------------------------------------------
 184
 185
 186         //------------------------------------------------------------------------------------------------------------
 187         //  Attributes getters and setters
 188         //------------------------------------------------------------------------------------------------------------
 189         static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 190         static wxContourMainFrame* getInstance();
 191         static void resetInstance();
 192
 193         //------------------------------------------------------------------------------------------------------------
 194         //  Other functional methods
 195         //------------------------------------------------------------------------------------------------------------
 196
 197         /*
 198         ** This method returns the vector of images selected by the user
 199         **      return value std::vector<vtkImageData*>
 200         */
 201         std::vector<vtkImageData*> getVectImages();
 202
 203         /**
 204         **      This methods connect the event in the class interfMainPanel with the world of the appli
 205         **/
 206         void onCreateContourSpline( );
 207         void onCreateContourRectangle( );
 208         void onCreateContourCircle( );
 209         void onCreateContourLine( );
 210         void onCreateContourPoints( );
 211         void onCreateContourPolygon( );
 212         void onCreateContourBullEye(wxPanel* pan);
 213         /////////////////////////////////
 214         void onDeleteContour();
 215         void deleteContours( std::vector<std::string>  keyNamesVector );
 216         void deleteContour( std::string theKeyName );
 217         void onDeleteContoursActSlice();
 218         void onDeleteAllContours();
 219         void deleteAllContours();
 220         void setConceptValue( std::string name, int value );
 221         ConceptDataWrap* getLastConceptData();
 222         bool getIfConceptCheckedAt( std::string name, int pos );
 223
 224         void changeInstant();
 225
 226         int getNamesWrappingSize();
 227
 228         std::string getNameWrapping(int i);
 229
 230         void updateInstantOutlines();
 231         void updateInstantImageData();
 232         void updateInstantAxes();
 233
 234         void onChangeDeep(int val);
 235
 236 ///////////////////////////
 237         void onCopy();
 238         void onPaste();
 239         void onUndo();
 240         void onRedo();
 241         void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 242         void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 243 ///////////////////////7
 244         void onLoad();
 245         void onSave();
 246         void onImport();
 247         void openContours( FILE *pFile, FILE *pFileData, int version, bool staticContour );
 248
 249         void RefreshInterface();
 250
 251         vtkImageData* getImageData();
 252
 253         void onSegmentationOneSlice(int isovalue,int sampling,int method);
 254         void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 255         void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
 256         void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 257         void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
 258         int  GetImageDataSizeZ();
 259         void GetImageDataRange(double *range);
 260         void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
 261
 262         //AD
 263         void referenceLine();
 264         void refLineHide();
 265         void refLineShow();
 266         void refLineChangeWidth(int width);
 267
 268         //AD
 269         void onMirror();
 270
 271
 272 //====================================================================================================
 273
 274         void showAxis(bool show);
 275
 276         void onRigidPressed();
 277
 278         void onWidthOfContour(double width);
 279
 280         int getColorWindow();
 281         int getWindowLevel();
 282
 283         void onBrigthnessColorWindowLevel(int colorwindow,int windowlevel);
 284
 285         void onInterpolation(bool interpolate);
 286
 287         void onChangeInstant(std::string name,int actual);
 288
 289         void resetAppend();
 290
 291         void onSpreadAdd();
 292
 293         void onSpreadGo(int type);
 294
 295         void getInstantVector(std::vector<int>& tempVector);
 296
 297         std::vector<std::string> getOutlinesName(int slide);
 298
 299         //
 300         //
 301         // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
 302         //
 303         void onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
 304
 305         void onSaveResults(std::string directory,std::string namefile, std::string filename,
 306                 int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
 307
 308         void SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
 309
 310
 311
 312         void onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
 313
 314         void onSnakePressed();
 315
 316         void saveFileWithContoursAutomatique();
 317
 318         void ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
 319
 320         wxPanel *getMaskImageViewPanel(wxWindow *parent);
 321         void SetContourGroup(int contourGroup);
 322         wxPanel *getThresholdImageViewPanel(wxWindow *parent);
 323
 324
 325 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 326
 327         /**
 328         * Associates the String parameter with the contour
 329         * @param label Label entered by the user
 330         * @param manualBaseModel Currently selected contour
 331         */
 332         void onPrintLabel (wxString label, manualBaseModel* manualModel);
 333
 334         /**
 335         * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
 336         * @param manualBaseModel Currently selected contour
 337         */
 338         void onInsertCalculation(manualBaseModel* manualModel);
 339
 340         /**
 341         * Assigns and returns the value of a pixel in millimeters
 342         @ param value Measure of the pixel in millimeters
 343         */
 344         double onePixelSize(double value);
 345
 346         /**
 347         * Returns the type of the currently selected contour
 348         */
 349         int getType();
 350
 351         /**
 352         * Returns the size in pixels of the currently selected contour
 353         */
 354         double getContourSizeInPixels();
 355
 356         /**
 357         * Returns the currently selected contour. If no contour is selected returns NULL
 358         */
 359         manualBaseModel* getContour();
 360
 361         /**
 362         * Returns the Path of the data persistence file
 363         */
 364         std::string GetFileLocation();
 365
 366         /**
 367         * Assign a new path to the data persistence file
 368         @ param newFileLocation New path of the file
 369         */
 370         void SetFileLocation(std::string newFileLocation);
 371 //------------------------------------------------------------------------------------------------------------
 372
 373         void SetScalarRange(int grayRangeMin, int grayRangeMax);
 374
 375 //------------------------------------------------------------------------------------------------------------
 376
 377 private:
 378         //------------------------------------------------------------------------------------------------------------
 379         //  Private methods
 380         //------------------------------------------------------------------------------------------------------------
 381
 382
 383         //------------------------------------------------------------------------------------------------------------
 384         // Attributtes
 385         //------------------------------------------------------------------------------------------------------------
 386
 387         int _contourGroup;
 388
 389         static wxContourMainFrame* instance;
 390
 391         KernelManagerContour* kernelManager;
 392
 393         interfMainPanel* _pannew;
 394
 395         PerformingOperation* _performingOperation;
 396
 397         std::string _datadir;
 398
 399         wxContourViewPanel* _theViewPanel;
 400
 401         wxInstantChooserPanel * _instantPanel;
 402
 403         //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
 404         manualLineControler     * _refLineControl;
 405         manualContourModelLine  * _refLineModel;
 406         manualViewLine          * _refLineView;
 407
 408
 409
 410         wxAuiManager m_mgr;
 411         wxAuiNotebook * notebook;
 412
 413     long m_notebook_style;
 414     long m_notebook_theme;
 415     int _numberOfVariablesStatistics;
 416
 417
 418         // Contour Image Mask
 419         ThresholdImageView              *_viewMaskImage;
 420         ThresholdImageViewPanel *_viewMaskImagePanel;
 421
 422         // Threshold Image
 423         ThresholdImageView              *_viewThresholdImage;
 424         ThresholdImageViewPanel *_viewThresholdImagePanel;
 425
 426
 427         std::vector<vtkImageData*> _images;
 428
 429         bool _actorPresent;
 430
 431
 432
 433
 434
 435         /*DECLARE_CLASS(wxContourMainFrame)
 436         // any class wishing to process wxWindows events must use this macro
 437         DECLARE_EVENT_TABLE()*/
 438         bool _creatingContoursActive;
 439 ////////JCP 21 - 11 - 08
 440         void createContour( int typeContour );
 441
 442         //manualContourModel * factoryManualContourModel(int typeContour);
 443
 444         manualBaseModel * factoryManualContourModel(wxPanel* panel);
 445
 446         ContourExtractData      *_contourextractdata;
 447
 448
 449         void saveState();
 450         void loadState(std::string filename);
 451         void loadContours( FILE *pFile, bool staticContour );
 452
 453         void saveFileWithContours( std::string filename );
 454         void onLoadContours(std::string fileNameContourROI);
 455
 456         int inredo;
 457         int inundo;
 458         std::string     stundoredo;
 459
 460
 461         static char COPY;
 462
 463 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 464         wxWindow *infoWin2;
 465         wxPanel *calibrationPanel;
 466         wxPanel *calibrationPanelError;
 467         double _onePixelSize;
 468         std::string _imageLocation;
 469         std::string _fileLocation;
 470 //------------------------------------------------------------------------------------------------------------
 471
 472 };
 473
 474 #endif