lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.h

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 #ifndef __wxContourMainFrame_h_INCLUDED_H__
  27 #define __wxContourMainFrame_h_INCLUDED_H__
  28
  29
  30 // -----------------------------------------------------------------------------------------------------------
  31 // WX headers inclusion.
  32 // For compilers that support precompilation, includes <wx/wx.h>.
  33 // -----------------------------------------------------------------------------------------------------------
  34
  35 #include <wx/wxprec.h>
  36 #ifdef __BORLANDC__
  37 #pragma hdrstop
  38 #endif
  39 #ifndef WX_PRECOMP
  40 #include <wx/wx.h>
  41 #endif
  42
  43
  44 //------------------------------------------------------------------------------------------------------------
  45 // Includes
  46 //------------------------------------------------------------------------------------------------------------
  47 #include "wx/aui/aui.h"
  48
  49 #include "interfMainPanel.h"
  50 #include "KernelManagerContour.h"
  51
  52 //#include "wxVtkBaseView_SceneManager.h"
  53 #include "wxInstantChooserPanel.h"
  54 #include "wxContourViewPanel.h"
  55
  56 //#include "ContourWorkspace.h"
  57 #include "ContourExtractData.h"
  58 #include "PerformingOperation.h"
  59
  60 #include "manualLineControler.h"
  61 #include "manualContourModelLine.h"
  62 #include "manualViewLine.h"
  63
  64 #include "ThresholdImageView.h"
  65 #include "ThresholdImageViewPanel.h"
  66 #include "ColorLayerImageView.h"
  67 #include "ColorLayerImageViewPanel.h"
  68
  69
  70 //ITK
  71 #include "itkImage.h"
  72 #include "itkGeodesicActiveContourLevelSetImageFilter.h"
  73
  74 #include "itkCurvatureAnisotropicDiffusionImageFilter.h"
  75 #include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
  76 #include "itkSigmoidImageFilter.h"
  77 #include "itkFastMarchingImageFilter.h"
  78 #include "itkRescaleIntensityImageFilter.h"
  79 #include "itkBinaryThresholdImageFilter.h"
  80 #include "itkZeroCrossingImageFilter.h"
  81 #include "itkCastImageFilter.h"
  82
  83 //EED10JUIN2011  #include "itkImageFileWriter.h"
  84
  85 #include "itkImageToVTKImageFilter.h"
  86 #include "itkVTKImageToImageFilter.h"
  87
  88 //VTK
  89 #include <vtkImageSeedConnectivity.h>
  90 #include <vtkImageMarchingCubes.h>
  91 #include "vtkContourFilter.h"
  92 #include "vtkMarchingContourFilter.h"
  93 #include "vtkPolyDataConnectivityFilter.h"
  94 #include "vtkCleanPolyData.h"
  95 #include "vtkImageReslice.h"
  96 #include "vtkMetaImageWriter.h"
  97 #include "vtkImageData.h"
  98 #include "vtkTransform.h"
  99
 100 #include "vtkCamera.h"
 101 #include "vtkImageActor.h"
 102 #include <vtkImageMapToColors.h>
 103 #include <vtkLookupTable.h>
 104 #include <vtkCommand.h>
 105
 106 //#include "vtkMetaImageReader.h"
 107
 108 //------------------------------------------------------------------------------------------------------------
 109 // Events declaration
 110 //------------------------------------------------------------------------------------------------------------
 111
 112 //BEGIN_DECLARE_EVENT_TYPES()
 113 //END_DECLARE_EVENT_TYPES()
 114
 115 /** file wxContourMainFrame.h */
 116
 117
 118 //------------------------------------------------------------------------------------------------------------
 119 // Class definition
 120 //------------------------------------------------------------------------------------------------------------
 121 class interfMainPanel;
 122 class wxContourMainFrame : public wxPanel {
 123
 124         public:
 125
 126         //------------------------------------------------------------------------------------------------------------
 127         // Constructors & Destructors
 128         //------------------------------------------------------------------------------------------------------------
 129
 130
 131         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
 132         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 133
 134         ~wxContourMainFrame();
 135
 136         //------------------------------------------------------------------------------------------------------------
 137         // Creational and initialization methods
 138         //------------------------------------------------------------------------------------------------------------
 139
 140         void setVectImages(std::vector<vtkImageData*> imgs);
 141
 142         bool configurePanels( );
 143
 144         bool addNewPanel(wxPanel* panel);
 145
 146         wxAuiNotebook * createNotebook();
 147
 148         void createInstantChooserPanel(wxAuiNotebook * parent);
 149
 150         void createViewPanel(wxAuiNotebook * parent);
 151
 152         void createInstantChooserPanel(wxWindow * parent);
 153
 154         void createViewPanel(wxWindow * parent);
 155
 156         void setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel );
 157
 158         void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
 159
 160         void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
 161
 162         void ShowToolsPanel(bool show);
 163
 164
 165         ////------------------------------------------------------------------------------------------------------------
 166         //// Methods for capturing events
 167         ////------------------------------------------------------------------------------------------------------------
 168
 169
 170         ////------------------------------------------------------------------------------------------------------------
 171         ////  Model management methods
 172         ////------------------------------------------------------------------------------------------------------------
 173
 174
 175         //------------------------------------------------------------------------------------------------------------
 176         //  Attributes getters and setters
 177         //------------------------------------------------------------------------------------------------------------
 178         static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 179         static wxContourMainFrame* getInstance();
 180         static void resetInstance();
 181
 182         //------------------------------------------------------------------------------------------------------------
 183         //  Other functional methods
 184         //------------------------------------------------------------------------------------------------------------
 185
 186         /*
 187         ** This method returns the vector of images selected by the user
 188         **      return value std::vector<vtkImageData*>
 189         */
 190         std::vector<vtkImageData*> getVectImages();
 191
 192         /**
 193         **      This methods connect the event in the class interfMainPanel with the world of the appli
 194         **/
 195         void onCreateContourSpline( );
 196         void onCreateContourRectangle( );
 197         void onCreateContourCircle( );
 198         void onCreateContourLine( );
 199         void onCreateContourPoints( );
 200         void onCreateContourPolygon( );
 201         void onCreateContourBullEye(wxPanel* pan);
 202         /////////////////////////////////
 203         void onDeleteContour();
 204         void deleteContours( std::vector<std::string>  keyNamesVector );
 205         void deleteContour( std::string theKeyName );
 206         void onDeleteContoursActSlice();
 207         void onDeleteAllContours();
 208         void deleteAllContours();
 209         void setConceptValue( std::string name, int value );
 210         ConceptDataWrap* getLastConceptData();
 211         bool getIfConceptCheckedAt( std::string name, int pos );
 212
 213         void changeInstant();
 214
 215         int getNamesWrappingSize();
 216
 217         std::string getNameWrapping(int i);
 218
 219         void updateInstantOutlines();
 220         void updateInstantImageData();
 221         void updateInstantAxes();
 222
 223         void onChangeDeep(int val);
 224
 225 ///////////////////////////
 226         void onCopy();
 227         void onPaste();
 228         void onUndo();
 229         void onRedo();
 230         void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 231         void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 232 ///////////////////////7
 233         void onLoad();
 234         void onSave();
 235         void onImport();
 236         void onTest();
 237         void openContours( FILE *pFile, FILE *pFileData, bool staticContour );
 238
 239         void RefreshInterface();
 240
 241         vtkImageData* getImageData();
 242
 243         void onSegmentationOneSlice(int isovalue,int sampling,int method);
 244         void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 245         void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
 246         void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 247         void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
 248         int  GetImageDataSizeZ();
 249         void GetImageDataRange(double *range);
 250         void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
 251
 252         //AD
 253         void referenceLine();
 254         void refLineHide();
 255         void refLineShow();
 256         void refLineChangeWidth(int width);
 257
 258         //AD
 259         void onMirror();
 260
 261         //EED
 262         void FlipContours(int typeContourFlip, int flipDirection);
 263         void FlipSelectedContours(int flipDirection);
 264         void FlipActualSliceContours(int flipDirection);
 265         void FlipAllContours(int flipDirection);
 266         void FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection);
 267
 268
 269 //====================================================================================================
 270
 271         void showAxis(bool show);
 272         void onRigidPressed();
 273         void onWidthOfContour(double width);
 274         int getColorWindow();
 275         int getWindowLevel();
 276         void onBrigthnessColorWindowLevel(int colorwindow,int windowlevel);
 277         void onInterpolation(bool interpolate);
 278         void onChangeInstant(std::string name,int actual);
 279         void resetAppend();
 280         void onSpreadAdd();
 281         void onSpreadAddAll();
 282         void onSpreadGo(int type);
 283         void getInstantVector(std::vector<int>& tempVector);
 284         std::vector<std::string> getOutlinesName(int slide);
 285
 286         //
 287         //
 288         // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
 289         //
 290         void onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
 291         void onSaveResults(std::string directory,std::string namefile, std::string filename,
 292                 int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
 293         void SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
 294         void onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
 295         void onSnakePressed();
 296         void saveFileWithContoursAutomatique();
 297         void ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
 298         wxPanel *getMaskImageViewPanel(wxWindow *parent);
 299         void SetContourGroup(int contourGroup);
 300         wxPanel *getThresholdImageViewPanel(wxWindow *parent);
 301         wxPanel *getColorLayerImageViewPanel(wxWindow *parent);
 302
 303
 304 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 305
 306         /**
 307         * Associates the String parameter with the contour
 308         * @param label Label entered by the user
 309         * @param manualBaseModel Currently selected contour
 310         */
 311         void onPrintLabel (wxString label, manualBaseModel* manualModel);
 312
 313         /**
 314         * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
 315         * @param manualBaseModel Currently selected contour
 316         */
 317         void onInsertCalculation(manualBaseModel* manualModel);
 318
 319         /**
 320         * Assigns and returns the value of a pixel in millimeters
 321         @ param value Measure of the pixel in millimeters
 322         */
 323         double onePixelSize(double value);
 324
 325         /**
 326         * Returns the type of the currently selected contour
 327         */
 328         int getType();
 329
 330         /**
 331         * Returns the size in pixels of the currently selected contour
 332         */
 333         double getContourSizeInPixels();
 334
 335         /**
 336         * Returns the currently selected contour. If no contour is selected returns NULL
 337         */
 338         manualBaseModel* getContour();
 339
 340         /**
 341         * Returns the Path of the data persistence file
 342         */
 343         std::string GetFileLocation();
 344
 345         /**
 346         * Assign a new path to the data persistence file
 347         @ param newFileLocation New path of the file
 348         */
 349         void SetFileLocation(std::string newFileLocation);
 350 //------------------------------------------------------------------------------------------------------------
 351
 352         void SetScalarRange(int grayRangeMin, int grayRangeMax);
 353
 354         std::string GetStringTypeImage( vtkImageData* image);
 355
 356 //------------------------------------------------------------------------------------------------------------
 357
 358 private:
 359         //------------------------------------------------------------------------------------------------------------
 360         //  Private methods
 361         //------------------------------------------------------------------------------------------------------------
 362
 363
 364         //------------------------------------------------------------------------------------------------------------
 365         // Attributtes
 366         //------------------------------------------------------------------------------------------------------------
 367
 368         int _contourGroup;
 369         static wxContourMainFrame   *instance;
 370         KernelManagerContour        *kernelManager;
 371         interfMainPanel             *_pannew;
 372         PerformingOperation         *_performingOperation;
 373         std::string                 _datadir;
 374         wxContourViewPanel          *_theViewPanel;
 375         wxInstantChooserPanel       *_instantPanel;
 376
 377         //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
 378         manualLineControler         *_refLineControl;
 379         manualContourModelLine      *_refLineModel;
 380         manualViewLine              *_refLineView;
 381
 382         wxAuiManager                m_mgr;
 383         wxAuiNotebook               *notebook;
 384         long                    m_notebook_style;
 385         long                    m_notebook_theme;
 386         int                      _numberOfVariablesStatistics;
 387
 388         // Contour Image Mask
 389         ThresholdImageView              *_viewMaskImage;
 390         ThresholdImageViewPanel         *_viewMaskImagePanel;
 391
 392         // Threshold Image
 393         ThresholdImageView                      *_viewThresholdImage;
 394         ThresholdImageViewPanel         *_viewThresholdImagePanel;
 395
 396         // Color Layer Image
 397         ColorLayerImageViewPanel        *_viewColorLayerImagePanel;
 398         std::vector<vtkImageData*>  _images;
 399         bool                        _actorPresent;
 400
 401     // temporary variables readding .roi file
 402     int                                 _tmpReadFileImageDim[3];
 403         double                                  _tmpReadFileImageSpac[3];
 404     int                                 _tmpReadFileTypeOfTransformation;
 405     void readDimSpc(FILE *pFile, bool interactiveOption);
 406
 407
 408         /*DECLARE_CLASS(wxContourMainFrame)
 409         // any class wishing to process wxWindows events must use this macro
 410         DECLARE_EVENT_TABLE()*/
 411         bool                        _creatingContoursActive;
 412 ////////JCP 21 - 11 - 08
 413         void createContour( int typeContour );
 414         //manualContourModel * factoryManualContourModel(int typeContour);
 415         manualBaseModel * factoryManualContourModel(wxPanel* panel);
 416         ContourExtractData              *_contourextractdata;
 417
 418         void saveState();
 419         void loadState(std::string filename);
 420
 421 //      void loadContours( FILE *pFile, bool staticContour );
 422
 423         void saveFileWithContours( std::string filename );
 424         void onLoadContours(std::string fileNameContourROI, bool interactiveInterface);
 425         void SetZForAllContours(int pz);
 426
 427         int                         inredo;
 428         int                         inundo;
 429         std::string                     stundoredo;
 430         static char                 COPY;
 431
 432 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 433         wxWindow                    *infoWin2;
 434         wxPanel                     *calibrationPanel;
 435         wxPanel                     *calibrationPanelError;
 436         double                      _onePixelSize;
 437         std::string                 _imageLocation;
 438         std::string                 _fileLocation;
 439 //------------------------------------------------------------------------------------------------------------
 440
 441         wxFrame                                         *_frameShowResultImages;
 442
 443 };
 444
 445 #endif