2 //----------------------------------------------------------------------------------------------------------------
3 // Class definition include
4 //----------------------------------------------------------------------------------------------------------------
5 #include "KernelManagerContour.h"
8 KernelManagerContour::KernelManagerContour(){
11 /**THIS ALL SHOULD BE IN AN OTHER LIB CALLED PERSISTANCE
18 seconds = time (NULL);
22 stundoredo = "data/temp"+intToString(time);
25 _contourPropagation = NULL;
27 mkdir(stundoredo.c_str());
29 mkdir(stundoredo.c_str(),755);
31 stundoredo += "/cont";
37 KernelManagerContour::KernelManagerContour(std::vector<vtkImageData*> images,std::string datadir,std::string tmpdir)
41 /**THIS ALL SHOULD BE IN AN OTHER LIB CALLED PERSISTANCE
48 seconds = time (NULL);
52 stundoredo = tmpdir+"/temp"+intToString(time);
55 _contourPropagation = NULL;
57 mkdir(tmpdir.c_str());
58 mkdir(stundoredo.c_str());
60 mkdir(tmpdir.c_str(),755);
61 mkdir(stundoredo.c_str(),755);
63 stundoredo += "/cont";
67 setVectImages(images);
68 initializeEnvironment(datadir);
72 KernelManagerContour::~KernelManagerContour()
76 std::vector<vtkImageData*> KernelManagerContour::getVectImages()
80 void KernelManagerContour::setVectImages(std::vector<vtkImageData*> vectimg)
83 std::vector<double> vectspc;
85 for(int i = 0; i < (int)(vectimg.size()); i++){
86 vtkImageData* img = vectimg[i];
87 vtkImageChangeInformation* change = vtkImageChangeInformation::New();
88 change->SetInformationInput(img);
89 change->SetInputConnection(img->GetProducerPort());
92 change->SetOutputSpacing(1,1,1);
96 vectspc.push_back(spc[0]);
97 vectspc.push_back(spc[1]);
98 vectspc.push_back(spc[2]);
99 vectimagesSpacing.push_back(vectspc);
100 vectimg[i] = change->GetOutput();
103 vectimages = vectimg;
106 void KernelManagerContour::initializeEnvironment(std::string datadir){
108 std::string conceptsFN = datadir+"holaConceptsFile.cf";
109 std::string imageSourcesFN = datadir+"holaImagesInstantsFile.of";
110 std::string imageSectionsFN = "";
111 std::string axeThingsFN = "";
113 std::map<std::string, ImageSourceThing *> * sourcesMap = new std::map<std::string, ImageSourceThing *>();
114 std::map<std::string, ImageSectionThing *>* sectionsMap = new std::map<std::string, ImageSectionThing *>();
115 std::map<std::string, AxeThing *>* axesMap = new std::map<std::string, AxeThing *>();
116 std::map<std::string, ContourThing *>* outlinesMap = new std::map<std::string, ContourThing *>();
118 for(int i = 0; i < (int)(vectimages.size()); i++){
119 vtkImageData* selectedimage = vectimages[i];
120 ImageSourceThing * thing = new ImageSourceThing(selectedimage);
121 std::string imgstring = "Source Image "+intToString(i+1);
122 sourcesMap->insert(std::pair<std::string, ImageSourceThing *>( imgstring, thing));
126 OutlineModelBuilder * _builder = new OutlineModelBuilder( conceptsFN ,datadir);
127 _builder->buildImageSource_Envornment( imageSourcesFN, sourcesMap );
128 _builder->buildImageSection_Envornment( imageSectionsFN, sectionsMap );
129 _builder->buildAxe_Envornment(axeThingsFN, axesMap );
130 _builder->buildCountour_Envornment( imageSectionsFN, outlinesMap );
132 //Creating the objects to manage
133 modelManager = new OutlineModelManager( _builder->getImSourceEnv(), _builder->getImSectionEnv(), _builder->getAxesEnv(), _builder->getContourEnv() );
135 imageSource = modelManager->getImageSourceThingByKeyName( "Source Image 1" );
138 vtkImageData* KernelManagerContour::getSourceImage(){
139 return imageSource->getSourceImage();
141 OutlineModelManager* KernelManagerContour::getOutlineModelManager(){
145 std::string KernelManagerContour::createOutline(manualBaseModel * manModelContour,std::vector<int> instantVector){
146 return modelManager->createOutline( manModelContour, instantVector );
149 std::string KernelManagerContour::intToString(int num){
156 char temp = k % 10 + 48;
158 result = temp + result;
164 std::vector<std::string> KernelManagerContour::GetLstNameThingsStatic(){
165 return modelManager->GetLstNameThingsStatic();
168 void KernelManagerContour::SaveThingName(FILE* pFile, FILE *pFileData, std::string name ){
169 modelManager->SaveThingName(pFile, pFileData, name);
171 std::vector<std::string> KernelManagerContour::GetLstNameThings(){
172 return modelManager->GetLstNameThings();
174 //int KernelManagerContour::IsPartOfStaticList(std::string keyName ){
175 // return modelManager->IsPartOfStaticList(keyName);
178 bool KernelManagerContour::IsPartOfStaticList(std::string theKeyName){
179 return modelManager->IsPartOfStaticList(theKeyName) == -1;
182 void KernelManagerContour::deleteCModel(std::string theKeyName){
183 manualBaseModel* cModel = modelManager->getOutlineByKeyName(theKeyName)->getModel();
184 modelManager->removeOutline( theKeyName );
189 void KernelManagerContour::removeAllOutlines(){
190 modelManager->removeAllOutlines();
193 std::vector<NameWrapper *> KernelManagerContour::getActualInstantOutlines(){
194 return modelManager->getActualInstantOutlines();
197 int KernelManagerContour::getNamesWrappingSize(){
198 return getActualInstantOutlines().size();
201 std::string KernelManagerContour::getNameWrapping(int i){
202 return getActualInstantOutlines()[i]->getKeyName();
205 void KernelManagerContour::setInstant(Instant * theInstant){
206 modelManager->setInstant(theInstant);
207 //_actualInstant = theInstant;
210 Instant * KernelManagerContour::getCurrentInstant(){
211 return modelManager->getInstant();
213 void KernelManagerContour::setInstant(std::vector<int> vectInstant){
214 Instant* act = new Instant ( &vectInstant );
215 modelManager->setInstant(act);
218 std::string KernelManagerContour::createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData)
220 return modelManager->createCopyContourOf(anExistingKName, instantNoTouchData);
223 manualBaseModel* KernelManagerContour::getOutlineByKeyName(std::string cloneName)
225 return modelManager->getOutlineByKeyName (cloneName )->getModel();
228 bool KernelManagerContour::onRedo(std::string& filename){
232 std::string str = intToString(inundo);
233 filename = stundoredo + str + ".roi";
240 bool KernelManagerContour::onUndo(std::string& filename){
246 //itoa(inundo, str, 10);
247 std::string str = intToString(inundo);
250 filename = stundoredo + str + ".roi";
252 return true;//loadState(temp);
257 std::string KernelManagerContour::saveState(){
259 std::string str = intToString(inundo);
260 std::string temp = stundoredo + str + ".roi";
265 bool KernelManagerContour::onUndoSaveFile(std::string& filename){
270 //itoa(inundo, str, 10);
271 std::string str = intToString(inundo);
273 filename = stundoredo + str + ".roi";
275 //saveFileWithContours(temp);
282 void KernelManagerContour :: changeContourOfManager(std::string keyName, Instant *instant)
284 modelManager->ChangeContourOfList(keyName, instant);
287 void KernelManagerContour ::resetAppend()
289 if (_contourPropagation!=NULL)
291 _contourPropagation->resetAppend();
296 std::string KernelManagerContour::onSpreadAdd( std::vector<double> *vecX, std::vector<double> *vecY, std::vector<double> *vecZ, std::vector<int> instants)
298 if (_contourPropagation==NULL)
300 _contourPropagation = new ContourPropagation();
303 if (vecX->size()!=0){
305 int i,size=vecZ->size();
306 int actualSlice = instants[1];
307 for ( i=0 ; i<size ; i++ )
309 (*vecZ)[i] = actualSlice;
312 _contourPropagation->appendContour(vecX , vecY , vecZ);
313 return intToString(actualSlice);
319 void KernelManagerContour::getMaxMinZ(double *minZ,double *maxZ)
321 if (_contourPropagation!=NULL)
323 _contourPropagation->getMaxMinZ(minZ, maxZ);
328 void KernelManagerContour::CalculeSplinePropagation()
330 _contourPropagation->setInterpolationNumber(100);
331 _contourPropagation->CalculeSplinePropagation();
334 manualBaseModel* KernelManagerContour::GetPoints(int z,int type, std::vector<double>* vecCtrlPointX,std::vector<double>* vecCtrlPointY,std::vector<double>* vecCtrlPointZ, std::string& theName,int typeofcontour, std::vector<int> tempVector)
336 bool addedModel = false;
337 manualBaseModel* manModelContour=NULL;
339 if (_contourPropagation->ifSliceKeyContourExist(z)==false){
341 manModelContour = factoryManualContourModel( typeofcontour );
343 int idTmp = _contourPropagation->FindIdWithZ(z);
345 if (type==0) // Initial Points
347 _contourPropagation->GetInitialControlPoints( idTmp , vecCtrlPointX,vecCtrlPointY,vecCtrlPointZ);
349 if (type==1) // Automatique Method
351 _contourPropagation->GetControlPoints( idTmp ,vecCtrlPointX,vecCtrlPointY,vecCtrlPointZ);
353 if (type==2) // sampling
355 _contourPropagation->GetControlPoints( idTmp , 20.0 ,vecCtrlPointX,vecCtrlPointY,vecCtrlPointZ);
357 //--------------------------------------------------------------------
358 int sizeCtrPt = vecCtrlPointX->size();
359 for (int j=0 ; j<sizeCtrPt ; j++)
361 //JSTG_16-07-08_----------------------------------------------------------------
362 manModelContour->AddPoint( (*vecCtrlPointX)[j] , (*vecCtrlPointY)[j] , 900 );
363 //--------------------------------------------------------------------
367 theName = modelManager->createOutline( manModelContour, tempVector );
368 addedModel = theName.compare("") != 0;
370 manModelContour = NULL;
373 }// ifSliceKeyContourExist
374 return manModelContour;
377 manualBaseModel * KernelManagerContour::factoryManualContourModel(int typeContour)
379 manualBaseModel *manModelContour=NULL;
381 // Creating the model
382 // NOTE: The view and the controler are created in the wxVtkBaseView_SceneManager class, configureViewControlTo method
387 manModelContour = new manualContourModel();
393 manModelContour = new manualContourModel();
399 manModelContour = new manualContourModelRoi();
405 manModelContour = new manualContourModelCircle();
411 manModelContour = new manualContourModelLine();
417 manModelContour = new manualBaseModel();
423 manModelContour = new manualContourModelPolygon();
426 return manModelContour;
429 std::vector<std::string> KernelManagerContour::getOutlinesNameAtInstant(std::vector<int> tempvector){
430 Instant instant(&tempvector);
431 std::vector<ContourThing**> vectcont = modelManager->getOutlinesAtInstant( &instant );
432 std::vector<std::string> vectname;
433 for(int i = 0; i < (int)(vectcont.size()); i++){
434 ContourThing **contourthing = vectcont[i];
435 vectname.push_back((*contourthing)->getName());
440 std::vector<ContourThing**> KernelManagerContour::getOutlinesAtInstant(Instant* instant ){
441 return modelManager->getOutlinesAtInstant(instant);
444 std::vector<manualBaseModel*> KernelManagerContour::ExploseEachModel( std::vector<manualBaseModel*> lstManConMod ){
445 std::vector<manualBaseModel*> lstTmp;
446 std::vector<manualBaseModel*> lstResult;
448 int i,iSize=lstManConMod.size();
449 for (i=0;i<iSize;i++)
451 lstTmp = lstManConMod[i]->ExploseModel();
453 for (j=0;j<jSize;j++)
455 lstResult.push_back( lstTmp[j] );
461 void KernelManagerContour::getConceptsInformation(std::vector<std::string>& conceptNameVect, std::vector<int>& conceptSizeVect){
462 modelManager-> getConceptsInformation(conceptNameVect, conceptSizeVect);
466 vtkImageData* KernelManagerContour::getImageAtInstant(std::vector<int> inst){
467 int index = inst[5]-1;
469 if(index < (int)(vectimages.size())&&index!=_currentIndex){
471 return vectimages[index];
476 std::string KernelManagerContour::getCurrentFileName(){
480 void KernelManagerContour::setCurrentFileName(std::string filenam){
481 this->filename = filenam;
484 std::string KernelManagerContour::parseOsirixFile(std::string filename){
487 #ifdef ParserOsirix_BUILD
488 vtkImageData* sourceimage;
493 xsdfile.append("\\XML\\osirixschema.xsd");
495 sourceimage = getSourceImage();
496 OsirixParser p(xsdfile.c_str(), sourceimage->GetSpacing(), sourceimage->GetExtent());
498 if(p.ParseFile(filename.c_str())!= 0){
502 return p.getContoursFileName();