lib/kernel_ManagerContour_NDimensions/KernelManagerContour.cxx

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26
  27 //----------------------------------------------------------------------------------------------------------------
  28 // Class definition include
  29 //----------------------------------------------------------------------------------------------------------------
  30 #include "KernelManagerContour.h"
  31
  32
  33 KernelManagerContour::KernelManagerContour(){
  34
  35
  36 /**THIS ALL SHOULD BE IN AN OTHER LIB CALLED PERSISTANCE
  37 **
  38 **/
  39         inredo = 0;
  40         inundo = 0;
  41
  42         time_t seconds;
  43         seconds = time (NULL);
  44         int time = seconds;
  45
  46
  47         stundoredo = "data/temp"+intToString(time);
  48         _currentIndex = 0;
  49
  50         _contourPropagation = NULL;
  51 #if(WIN32)
  52                 mkdir(stundoredo.c_str());
  53 #else
  54                 mkdir(stundoredo.c_str(),755);
  55 #endif
  56         stundoredo += "/cont";
  57 /**
  58 **  FINISH PERSISTANCE
  59 **/
  60
  61 }
  62 KernelManagerContour::KernelManagerContour(std::vector<vtkImageData*> images,std::string datadir,std::string tmpdir)
  63 {
  64
  65
  66 /**THIS ALL SHOULD BE IN AN OTHER LIB CALLED PERSISTANCE
  67 **
  68 **/
  69         inredo = 0;
  70         inundo = 0;
  71
  72         time_t seconds;
  73         seconds = time (NULL);
  74         int time = seconds;
  75
  76
  77         stundoredo = tmpdir+"/temp"+intToString(time);
  78         _currentIndex = 0;
  79
  80         _contourPropagation = NULL;
  81 #if(WIN32)
  82         mkdir(tmpdir.c_str());
  83         mkdir(stundoredo.c_str());
  84 #else
  85         mkdir(tmpdir.c_str(),755);
  86         mkdir(stundoredo.c_str(),755);
  87 #endif
  88         stundoredo += "/cont";
  89 /**
  90 **  FINISH PERSISTANCE
  91 **/
  92         setVectImages(images);
  93         initializeEnvironment(datadir);
  94
  95 }
  96
  97 KernelManagerContour::~KernelManagerContour()
  98 {
  99 }
 100
 101 std::vector<vtkImageData*> KernelManagerContour::getVectImages()
 102 {
 103         return vectimages;
 104 }
 105
 106
 107 void KernelManagerContour::setVectImages(std::vector<vtkImageData*> vectimg)
 108 {
 109         double spc[3];
 110         std::vector<double> vectspc;
 111
 112         for(int i = 0; i < (int)(vectimg.size()); i++){
 113                 vtkImageData* img = vectimg[i];
 114                 vtkImageChangeInformation* change = vtkImageChangeInformation::New();
 115                 change->SetInformationInput(img);
 116                 change->SetInputConnection(img->GetProducerPort());
 117                 img->GetSpacing(spc);
 118                 change->SetOutputSpacing(1,1,1);
 119
 120 //EED 18 fev 2014
 121                 change->SetOutputOrigin (0, 0, 0);
 122
 123                 change->Update();
 124                 vectspc.clear();
 125
 126                 vectspc.push_back(spc[0]);
 127                 vectspc.push_back(spc[1]);
 128                 vectspc.push_back(spc[2]);
 129                 vectimagesSpacing.push_back(vectspc);
 130                 vectimg[i] = change->GetOutput();
 131         }
 132
 133         vectimages = vectimg;
 134 }
 135
 136
 137 void KernelManagerContour::GetSpacing(double *vecspc, int iImage)
 138 {
 139         vecspc[0]=vectimagesSpacing[iImage][0];
 140         vecspc[1]=vectimagesSpacing[iImage][1];
 141         vecspc[2]=vectimagesSpacing[iImage][2];
 142 }
 143
 144
 145 void KernelManagerContour::initializeEnvironment(std::string datadir){
 146         _datadir = datadir;
 147         std::string conceptsFN                  =  datadir+"holaConceptsFile.cf";
 148         std::string imageSourcesFN              =  datadir+"holaImagesInstantsFile.of";
 149         std::string imageSectionsFN             = "";
 150         std::string axeThingsFN                 = "";
 151
 152         std::map<std::string, ImageSourceThing *> * sourcesMap          = new std::map<std::string, ImageSourceThing *>();
 153         std::map<std::string, ImageSectionThing *>* sectionsMap         = new std::map<std::string, ImageSectionThing *>();
 154         std::map<std::string, AxeThing *>* axesMap                                      = new std::map<std::string, AxeThing *>();
 155         std::map<std::string, ContourThing *>* outlinesMap                      = new std::map<std::string, ContourThing *>();
 156
 157         for(int i = 0; i < (int)(vectimages.size()); i++){
 158                 vtkImageData* selectedimage = vectimages[i];
 159                 ImageSourceThing * thing                                                                        = new ImageSourceThing(selectedimage);
 160                 std::string imgstring = "Source Image "+intToString(i+1);
 161                 sourcesMap->insert(std::pair<std::string, ImageSourceThing *>( imgstring, thing));
 162         }
 163
 164
 165         OutlineModelBuilder * _builder                                                          = new OutlineModelBuilder( conceptsFN ,datadir);
 166         _builder->buildImageSource_Envornment( imageSourcesFN, sourcesMap );
 167         _builder->buildImageSection_Envornment( imageSectionsFN, sectionsMap );
 168         _builder->buildAxe_Envornment(axeThingsFN, axesMap );
 169         _builder->buildCountour_Envornment( imageSectionsFN, outlinesMap );
 170
 171         //Creating the objects to manage
 172         modelManager                            = new OutlineModelManager( _builder->getImSourceEnv(), _builder->getImSectionEnv(), _builder->getAxesEnv(),  _builder->getContourEnv() );
 173
 174         imageSource     = modelManager->getImageSourceThingByKeyName( "Source Image 1" );
 175
 176 }
 177 vtkImageData* KernelManagerContour::getSourceImage(){
 178         return imageSource->getSourceImage();
 179 }
 180 OutlineModelManager* KernelManagerContour::getOutlineModelManager(){
 181         return modelManager;
 182 }
 183
 184 std::string KernelManagerContour::createOutline(manualBaseModel * manModelContour,std::vector<int> instantVector){
 185         return modelManager->createOutline( manModelContour, instantVector );
 186 }
 187
 188 std::string KernelManagerContour::intToString(int num){
 189         std::string result;
 190         if(num == 0){
 191                 result = "0";
 192         }else{
 193                 int k=num;
 194                 while (k > 0){
 195                         char temp = k % 10 + 48;
 196                         k = k / 10;
 197                         result = temp + result;
 198                 }
 199         }
 200         return result;
 201 }
 202
 203 std::vector<std::string> KernelManagerContour::GetLstNameThingsStatic(){
 204         return modelManager->GetLstNameThingsStatic();
 205 }
 206
 207 void KernelManagerContour::SaveThingName(FILE* pFile, FILE *pFileData, std::string name ){
 208         modelManager->SaveThingName(pFile, pFileData, name);
 209 }
 210 std::vector<std::string> KernelManagerContour::GetLstNameThings(){
 211         return modelManager->GetLstNameThings();
 212 }
 213 //int KernelManagerContour::IsPartOfStaticList(std::string keyName ){
 214 //      return modelManager->IsPartOfStaticList(keyName);
 215 //}
 216
 217 bool KernelManagerContour::IsPartOfStaticList(std::string theKeyName){
 218         return modelManager->IsPartOfStaticList(theKeyName) == -1;
 219 }
 220
 221 void KernelManagerContour::deleteCModel(std::string theKeyName){
 222         manualBaseModel* cModel         = modelManager->getOutlineByKeyName(theKeyName)->getModel();
 223         modelManager->removeOutline( theKeyName );
 224
 225         delete cModel;
 226 }
 227
 228 void KernelManagerContour::removeAllOutlines(){
 229         modelManager->removeAllOutlines();
 230 }
 231
 232 std::vector<NameWrapper *> KernelManagerContour::getActualInstantOutlines(){
 233         return modelManager->getActualInstantOutlines();
 234 }
 235
 236 int KernelManagerContour::getNamesWrappingSize(){
 237         return getActualInstantOutlines().size();
 238 }
 239
 240 std::string KernelManagerContour::getNameWrapping(int i){
 241         return getActualInstantOutlines()[i]->getKeyName();
 242 }
 243
 244 void KernelManagerContour::setInstant(Instant * theInstant){
 245         modelManager->setInstant(theInstant);
 246         //_actualInstant = theInstant;
 247 }
 248
 249 Instant * KernelManagerContour::getCurrentInstant(){
 250         return modelManager->getInstant();
 251 }
 252 void KernelManagerContour::setInstant(std::vector<int> vectInstant){
 253         Instant* act = new Instant ( &vectInstant );
 254         modelManager->setInstant(act);
 255 }
 256
 257 std::string KernelManagerContour::createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData)
 258 {
 259         return modelManager->createCopyContourOf(anExistingKName, instantNoTouchData);
 260 }
 261
 262 manualBaseModel* KernelManagerContour::getOutlineByKeyName(std::string cloneName)
 263 {
 264         return modelManager->getOutlineByKeyName (cloneName )->getModel();
 265 }
 266
 267 bool KernelManagerContour::onRedo(std::string& filename){
 268         if(inredo > 0){
 269                 inredo--;
 270                 inundo++;
 271                 std::string str = intToString(inundo);
 272                 filename = stundoredo + str + ".roi";
 273                 //loadState(temp);
 274                 return true;
 275         }
 276         return false;
 277 }
 278
 279 bool KernelManagerContour::onUndo(std::string& filename){
 280         if(inundo>0){
 281                 inredo++;
 282                 inundo--;
 283
 284                 //char str[9000];
 285                 //itoa(inundo, str, 10);
 286                 std::string str = intToString(inundo);
 287
 288
 289                 filename = stundoredo + str + ".roi";
 290
 291                 return true;//loadState(temp);
 292         }
 293         return false;
 294 }
 295
 296 std::string KernelManagerContour::saveState(){
 297         inredo=0;
 298         std::string str = intToString(inundo);
 299         std::string temp = stundoredo + str + ".roi";
 300         inundo++;
 301         return temp;
 302 }
 303
 304 bool KernelManagerContour::onUndoSaveFile(std::string& filename){
 305         if(inundo>0){
 306                 if(inredo==0){
 307
 308                         //char str[9000];
 309                         //itoa(inundo, str, 10);
 310                         std::string str = intToString(inundo);
 311
 312                         filename = stundoredo + str + ".roi";
 313                         return true;
 314                         //saveFileWithContours(temp);
 315
 316                 }
 317         }
 318         return false;
 319 }
 320
 321 void KernelManagerContour :: changeContourOfManager(std::string keyName, Instant *instant)
 322 {
 323         modelManager->ChangeContourOfList(keyName, instant);
 324 }
 325
 326 void KernelManagerContour ::resetAppend()
 327 {
 328     if (_contourPropagation!=NULL)
 329         {
 330                 _contourPropagation->resetAppend();
 331         }
 332 }
 333
 334
 335 std::string KernelManagerContour::onSpreadAdd( std::vector<double> *vecX, std::vector<double> *vecY, std::vector<double> *vecZ, std::vector<int> instants)
 336 {
 337     if (_contourPropagation==NULL)
 338     {
 339                 _contourPropagation = new ContourPropagation();
 340     }
 341
 342     if (vecX->size()!=0){
 343
 344         int i,size=vecZ->size();
 345         int actualSlice = instants[1];
 346         for ( i=0 ; i<size ; i++ )
 347         {
 348             (*vecZ)[i] = actualSlice;
 349         } // for
 350
 351         _contourPropagation->appendContour(vecX , vecY , vecZ);
 352         return intToString(actualSlice);
 353     }
 354         return "";
 355 }
 356
 357
 358 void KernelManagerContour::getMaxMinZ(double *minZ,double *maxZ)
 359 {
 360     if (_contourPropagation!=NULL)
 361         {
 362                 _contourPropagation->getMaxMinZ(minZ, maxZ);
 363         }
 364 }
 365
 366
 367 void KernelManagerContour::CalculeSplinePropagation()
 368 {
 369         _contourPropagation->setInterpolationNumber(100);
 370         _contourPropagation->CalculeSplinePropagation();
 371 }
 372
 373 manualBaseModel* KernelManagerContour::GetPoints(int z,int type, std::vector<double>* vecCtrlPointX,std::vector<double>* vecCtrlPointY,std::vector<double>* vecCtrlPointZ, std::string& theName,int typeofcontour, std::vector<int> tempVector)
 374 {
 375         bool addedModel = false;
 376         manualBaseModel* manModelContour=NULL;
 377
 378         if (_contourPropagation->ifSliceKeyContourExist(z)==false){
 379
 380                 manModelContour = factoryManualContourModel( typeofcontour );
 381
 382                 int idTmp = _contourPropagation->FindIdWithZ(z);
 383
 384                 if (type==0) // Initial Points
 385                 {
 386                         _contourPropagation->GetInitialControlPoints( idTmp , vecCtrlPointX,vecCtrlPointY,vecCtrlPointZ);
 387                 }
 388                 if (type==1)  // Automatique Method
 389                 {
 390                         _contourPropagation->GetControlPoints( idTmp  ,vecCtrlPointX,vecCtrlPointY,vecCtrlPointZ);
 391                 }
 392                 if (type==2)  // sampling
 393                 {
 394                         _contourPropagation->GetControlPoints( idTmp , 20.0 ,vecCtrlPointX,vecCtrlPointY,vecCtrlPointZ);
 395                 }
 396 //--------------------------------------------------------------------
 397                 int sizeCtrPt = vecCtrlPointX->size();
 398                 for (int j=0 ; j<sizeCtrPt ; j++)
 399                 {
 400 //JSTG_16-07-08_----------------------------------------------------------------
 401                         manModelContour->AddPoint( (*vecCtrlPointX)[j] , (*vecCtrlPointY)[j] , -900  );
 402 //--------------------------------------------------------------------
 403                 } // for j
 404
 405                 tempVector[1]=z;
 406                 theName = modelManager->createOutline( manModelContour, tempVector );
 407                 addedModel = theName.compare("") != 0;
 408                 if(!addedModel){
 409                         manModelContour = NULL;
 410                 }
 411
 412         }// ifSliceKeyContourExist
 413         return manModelContour;
 414 }
 415
 416 manualBaseModel * KernelManagerContour::factoryManualContourModel(int typeContour)
 417 {
 418         manualBaseModel *manModelContour=NULL;
 419
 420         // Creating the model
 421         // NOTE: The view and the controler are created in the wxVtkBaseView_SceneManager class, configureViewControlTo method
 422
 423         // spline
 424         if (typeContour==0)
 425         {
 426                 manModelContour = new manualContourModel();
 427         }
 428
 429         // spline
 430         if (typeContour==1)
 431         {
 432                 manModelContour = new manualContourModel();
 433         }
 434
 435         // rectangle
 436         if (typeContour==2)
 437         {
 438                 manModelContour = new manualContourModelRoi();
 439         }
 440
 441         // circle
 442         if (typeContour==3)
 443         {
 444                 manModelContour = new manualContourModelCircle();
 445         }
 446
 447         // line
 448         if (typeContour==6)
 449         {
 450                 manModelContour = new manualContourModelLine();
 451         }
 452
 453         // points
 454         if (typeContour==7)
 455         {
 456                 manModelContour = new manualBaseModel();
 457         }
 458
 459         // polygon
 460         if (typeContour==10)
 461         {
 462                 manModelContour = new manualContourModelPolygon();
 463         }
 464
 465         return manModelContour;
 466 }
 467
 468 std::vector<std::string> KernelManagerContour::getOutlinesNameAtInstant(std::vector<int> tempvector){
 469         Instant instant(&tempvector);
 470         std::vector<ContourThing**> vectcont = modelManager->getOutlinesAtInstant( &instant );
 471         std::vector<std::string> vectname;
 472         for(int i = 0; i < (int)(vectcont.size()); i++){
 473                 ContourThing **contourthing = vectcont[i];
 474                 vectname.push_back((*contourthing)->getName());
 475         }
 476     return vectname;
 477 }
 478
 479 std::vector<ContourThing**> KernelManagerContour::getOutlinesAtInstant(Instant* instant ){
 480         return modelManager->getOutlinesAtInstant(instant);
 481 }
 482
 483 std::vector<manualBaseModel*> KernelManagerContour::ExploseEachModel( std::vector<manualBaseModel*> lstManConMod ){
 484         std::vector<manualBaseModel*> lstTmp;
 485         std::vector<manualBaseModel*> lstResult;
 486         int j,jSize;
 487         int i,iSize=lstManConMod.size();
 488         for (i=0;i<iSize;i++)
 489         {
 490                 lstTmp = lstManConMod[i]->ExploseModel();
 491                 jSize=lstTmp.size();
 492                 for (j=0;j<jSize;j++)
 493                 {
 494                         lstResult.push_back( lstTmp[j] );
 495                 }
 496         }
 497         return lstResult;
 498 }
 499
 500 void KernelManagerContour::getConceptsInformation(std::vector<std::string>& conceptNameVect, std::vector<int>& conceptSizeVect){
 501         modelManager-> getConceptsInformation(conceptNameVect, conceptSizeVect);
 502 }
 503
 504
 505 vtkImageData* KernelManagerContour::getImageAtInstant(std::vector<int> inst){
 506         int index = inst[5]-1;
 507
 508         if(index < (int)(vectimages.size())&&index!=_currentIndex){
 509                 _currentIndex=index;
 510                 return vectimages[index];
 511         }
 512         return NULL;
 513 }
 514
 515 std::string KernelManagerContour::getCurrentFileName(){
 516         return filename;
 517 }
 518
 519 void KernelManagerContour::setCurrentFileName(std::string filenam){
 520         this->filename = filenam;
 521 }
 522
 523 std::string KernelManagerContour::parseOsirixFile(std::string filename){
 524
 525
 526 #ifdef ParserOsirix_BUILD
 527         vtkImageData* sourceimage;
 528         std::string xsdfile;
 529
 530         xsdfile = _datadir;
 531
 532         xsdfile.append("\\XML\\osirixschema.xsd");
 533
 534         sourceimage = getSourceImage();
 535         OsirixParser p(xsdfile.c_str(), sourceimage->GetSpacing(), sourceimage->GetExtent());
 536
 537         if(p.ParseFile(filename.c_str())!= 0){
 538
 539         }
 540
 541         return p.getContoursFileName();
 542 #else
 543         return "";
 544 #endif
 545
 546
 547 }
 548
 549