bbtk/src/bbcreaImageIOItkImagesChooserDialogBox.cxx

   1 /*
   2   # ---------------------------------------------------------------------
   3   #
   4   # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   5   #                        pour la Santé)
   6   # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   7   # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   8   # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   9   #
  10   #  This software is governed by the CeCILL-B license under French law and
  11   #  abiding by the rules of distribution of free software. You can  use,
  12   #  modify and/ or redistribute the software under the terms of the CeCILL-B
  13   #  license as circulated by CEA, CNRS and INRIA at the following URL
  14   #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  15   #  or in the file LICENSE.txt.
  16   #
  17   #  As a counterpart to the access to the source code and  rights to copy,
  18   #  modify and redistribute granted by the license, users are provided only
  19   #  with a limited warranty  and the software's author,  the holder of the
  20   #  economic rights,  and the successive licensors  have only  limited
  21   #  liability.
  22   #
  23   #  The fact that you are presently reading this means that you have had
  24   #  knowledge of the CeCILL-B license and that you accept its terms.
  25   # ------------------------------------------------------------------------
  26 */
  27 //=====
  28 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
  29 //=====
  30
  31 #include "bbcreaImageIOItkImagesChooserDialogBox.h"
  32 #include "bbcreaImageIOPackage.h"
  33
  34 #include "itkImage.h"
  35 #include "itkImportImageFilter.h"
  36
  37 /*
  38 // -------------------------------------------------------------------------
  39 // LFV: avoid itk::Concept check on 4d or superior images
  40 #define BBCREAIMAGEIO_ChooserDlg_Template( t, ty, di )            \
  41   if( t == typeid( itk::Image< ty, di >* ) )                       \
  42   {                                                               \
  43     this->Export< itk::Image< ty, di > >( );                      \
  44     this->ExportVTK< itk::Image< ty, di > >( );                   \
  45   }
  46 */
  47
  48 // -------------------------------------------------------------------------
  49 // LFV: avoid itk::Concept check on 4d or superior images
  50 #define BBCREAIMAGEIO_ChooserDlg_Template( t, ty, di )            \
  51   if( t == typeid( itk::Image< ty, di >* ) )                      \
  52   {                                                               \
  53     this->Export< ty , di  >( );                      \
  54     this->ExportVTK< itk::Image< ty, di > >( );                   \
  55   }
  56
  57
  58 // -------------------------------------------------------------------------
  59
  60 namespace bbcreaImageIO
  61 {
  62
  63 BBTK_ADD_BLACK_BOX_TO_PACKAGE(creaImageIO,ItkImagesChooserDialogBox)
  64 BBTK_BLACK_BOX_IMPLEMENTATION(ItkImagesChooserDialogBox,bbtk::AtomicBlackBox);
  65 //=====
  66 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
  67 //=====
  68 void ItkImagesChooserDialogBox::Process()
  69 {
  70
  71     dlg = new creaImageIO::WxAnySimpleDlg(0,crea::std2wx(bbGetInputTitle()),"localdatabase_Descriptor.dscp","Local Database");
  72     dlg->ShowModal();
  73
  74     bbtk::TypeInfo typ = bbitk::GetITKImagePtrTypeInfoFromPixelTypeInfoAndDimension(*dlg->getTypes().front(), dlg->getDims().front());
  75
  76     BBCREAIMAGEIO_ChooserDlg_Template( typ, char, 1 )
  77     else BBCREAIMAGEIO_ChooserDlg_Template( typ, short, 1 )
  78     else BBCREAIMAGEIO_ChooserDlg_Template( typ, int, 1 )
  79     else BBCREAIMAGEIO_ChooserDlg_Template( typ, long, 1 )
  80     else BBCREAIMAGEIO_ChooserDlg_Template( typ, float, 1 )
  81     else BBCREAIMAGEIO_ChooserDlg_Template( typ, double, 1 )
  82     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned char, 1 )
  83     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned short, 1 )
  84     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned int, 1 )
  85     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned long, 1 )
  86     else BBCREAIMAGEIO_ChooserDlg_Template( typ, char, 2 )
  87     else BBCREAIMAGEIO_ChooserDlg_Template( typ, short, 2 )
  88     else BBCREAIMAGEIO_ChooserDlg_Template( typ, int, 2 )
  89     else BBCREAIMAGEIO_ChooserDlg_Template( typ, long, 2 )
  90     else BBCREAIMAGEIO_ChooserDlg_Template( typ, float, 2 )
  91     else BBCREAIMAGEIO_ChooserDlg_Template( typ, double, 2 )
  92     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned char, 2 )
  93     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned short, 2 )
  94     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned int, 2 )
  95     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned long, 2 )
  96     else BBCREAIMAGEIO_ChooserDlg_Template( typ, char, 3 )
  97     else BBCREAIMAGEIO_ChooserDlg_Template( typ, short, 3 )
  98     else BBCREAIMAGEIO_ChooserDlg_Template( typ, int, 3 )
  99     else BBCREAIMAGEIO_ChooserDlg_Template( typ, long, 3 )
 100     else BBCREAIMAGEIO_ChooserDlg_Template( typ, float, 3 )
 101     else BBCREAIMAGEIO_ChooserDlg_Template( typ, double, 3 )
 102     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned char, 3 )
 103     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned short, 3 )
 104     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned int, 3 )
 105     else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned long, 3 );
 106
 107
 108     /* Deprecated
 109        BBTK_TEMPLATE_ITK_IMAGE_SWITCH(typ, Export);
 110        BBTK_TEMPLATE_ITK_IMAGE_SWITCH(typ, ExportVTK);
 111     */
 112
 113     delete dlg;
 114 }
 115
 116
 117 //template <class TImage>
 118 template <typename  ty, size_t di>
 119 void ItkImagesChooserDialogBox::Export()
 120 {
 121         typedef itk::Image<ty,di> TImage;
 122
 123 printf("EED ItkImagesChooserDialogBox::Export Start \n");
 124         if (dlg->getImagesSelected().size() == 1)
 125         {
 126 printf("EED ItkImagesChooserDialogBox::Export 1\n");
 127                 bbSetOutputOut( dlg->getTemplatedImagesSelected<TImage>().front().GetPointer() );
 128         } else if (dlg->getImagesSelected().size() > 1){
 129 printf("EED ItkImagesChooserDialogBox::Export 2\n");
 130                 OutputImagesITKType outVect;
 131                 typename  std::vector<typename TImage::Pointer> tempImgs= dlg->getTemplatedImagesSelected<TImage>();
 132                 typename std::vector<typename TImage::Pointer>::iterator it = tempImgs.begin();
 133                 for(;it != tempImgs.end(); ++it)
 134                 {
 135                         outVect.push_back( (*it).GetPointer() );
 136                 } // for
 137                 bbSetOutputOutIImages( outVect);
 138
 139 //EED creater one 3D image from 2D list
 140 //              const unsigned int Dimension = 3;
 141 //              typedef itk::RGBPixel< unsigned char > RGBPixelType;
 142 //              typedef itk::Image< RGBPixelType, Dimension > RGBImageType;
 143 //              typedef itk::ImportImageFilter< RGBPixelType, Dimension > ImportFilterType;
 144
 145 //              typedef itk::RGBPixel< ty > RGBPixelType;
 146                 typedef  ty RGBPixelType;
 147                 typedef itk::ImportImageFilter< ty , di > ImportFilterType;
 148      typename ImportFilterType::Pointer importFilter = ImportFilterType::New();
 149
 150
 151                 typename TImage::SizeType imsize;
 152 //              imsize[0] = img.width();
 153 //              imsize[1] = img.height();
 154                 imsize[0] = tempImgs[0].GetPointer()->GetLargestPossibleRegion().GetSize()[0];
 155                 imsize[1] = tempImgs[0].GetPointer()->GetLargestPossibleRegion().GetSize()[1];
 156                 imsize[2] = tempImgs.size();
 157 printf("EED ItkImagesChooserDialogBox::Export 2.10\n");
 158
 159                 typename ImportFilterType::IndexType start;
 160                 start.Fill( 0 );
 161                 typename ImportFilterType::RegionType region;
 162                 region.SetIndex( start );
 163                 region.SetSize( imsize );
 164                 importFilter->SetRegion( region );
 165
 166 //              const itk::SpacePrecisionType origin[ di ] = { 0.0, 0.0, 0.0 };
 167                 const itk::SpacePrecisionType origin[ 3 ] = { 0.0, 0.0, 0.0 };
 168                 importFilter->SetOrigin( origin );
 169
 170 //              const itk::SpacePrecisionType spacing[ di ] = { 1.0, 1.0, 1.0 };
 171                 const itk::SpacePrecisionType spacing[ 3 ] = { 1.0, 1.0, 1.0 };
 172                 importFilter->SetSpacing( spacing );
 173                 const unsigned long int numberOfPixels2D = imsize[0]*imsize[1];
 174                 const unsigned long int numberOfPixels3D = imsize[0]*imsize[1]*imsize[2];
 175
 176                 RGBPixelType * localBuffer      = new RGBPixelType[ numberOfPixels3D ];
 177                 RGBPixelType * tmpLocalBuffer   = localBuffer;
 178 printf("EED ItkImagesChooserDialogBox::Export 2.20\n");
 179
 180                 it = tempImgs.begin();
 181                 for(;it != tempImgs.end(); ++it)
 182                 {
 183 printf("EED ItkImagesChooserDialogBox::Export 2.30\n");
 184                         memcpy(tmpLocalBuffer, (*it).GetPointer()->GetBufferPointer(), numberOfPixels2D);
 185                         tmpLocalBuffer = tmpLocalBuffer + numberOfPixels2D;
 186                 } // for
 187
 188                 const bool importImageFilterWillOwnTheBuffer = true;
 189                 importFilter->SetImportPointer( localBuffer , numberOfPixels3D , importImageFilterWillOwnTheBuffer );
 190 importFilter->Update();
 191 importFilter->Register();
 192 printf("EED ItkImagesChooserDialogBox::Export 2.40\n");
 193
 194 //          bbSetOutputOut( (*tempImgs.begin()).GetPointer() );
 195 //          bbSetOutputOut( importFilter->GetOutput().unsafe_get<TImage*>() );
 196             bbSetOutputOut( importFilter->GetOutput() );
 197 printf("EED ItkImagesChooserDialogBox::Export 2.50\n");
 198
 199    } else {
 200 printf("EED ItkImagesChooserDialogBox::Export 3\n");
 201       // warning: passing NULL to non-pointer
 202       //bbSetOutputOut( NULL);
 203       bbSetOutputOut(0); // JPR
 204    }
 205          // FCY To test the Output
 206           //typedef itk::Image <short, 3> ImageType;
 207          //typedef itk::ImageFileReader< ImageType > itkReaderType;
 208      //  typename itkReaderType::Pointer reader = itkReaderType::New();
 209      //
 210      //  reader->SetFileName("d:\test.hdr");
 211      //   reader->Update();
 212          //reader->GetOutput()->Register();
 213      //  this->bbSetOutputOut(reader->GetOutput());
 214
 215 printf("EED ItkImagesChooserDialogBox::Export End \n");
 216
 217 }
 218
 219
 220 template <class TImage>
 221 void ItkImagesChooserDialogBox::ExportVTK()
 222 {
 223 printf("EED ItkImagesChooserDialogBox::ExportVTK Start \n");
 224
 225         // BBTK can support only a vector with same dimensions image.
 226          if (dlg->getDims().front() < 4)
 227          {
 228                   typename std::vector<typename TImage::Pointer> tempImgs= dlg->getTemplatedImagesSelected<TImage>();
 229                   typename std::vector<typename TImage::Pointer>::iterator it = tempImgs.begin();
 230                   for(;it != tempImgs.end(); ++it)
 231                   {
 232                         dlg->split3Din3Dvtk<TImage>( (*it) );
 233                   }
 234                   bbSetOutputOutVImages( dlg->getVtkImagesSelected() );
 235          } else if (dlg->getDims().front() == 4) {
 236                 // To Test
 237                  //  dlg->split4Din3Dvtk("d:/temp2");
 238                  // bbSetOutputOutVImages( dlg->getVtkImagesSelected());
 239          } else {
 240                   // NOT IMPLEMENTED YET FOR DIMENSIONS > 4
 241          } // if dlg
 242 printf("EED ItkImagesChooserDialogBox::ExportVTK End \n");
 243 }
 244
 245 //=====
 246 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 247 //=====
 248 void ItkImagesChooserDialogBox::bbUserSetDefaultValues()
 249 {
 250 }
 251
 252 //=====
 253 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 254 //=====
 255 void ItkImagesChooserDialogBox::bbUserInitializeProcessing()
 256 {
 257 }
 258
 259 //=====
 260 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 261 //=====
 262 void ItkImagesChooserDialogBox::bbUserFinalizeProcessing()
 263 {
 264 }
 265
 266 } // EO namespace bbcreaImageIO