2 # ---------------------------------------------------------------------
4 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
6 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
7 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
8 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
10 # This software is governed by the CeCILL-B license under French law and
11 # abiding by the rules of distribution of free software. You can use,
12 # modify and/ or redistribute the software under the terms of the CeCILL-B
13 # license as circulated by CEA, CNRS and INRIA at the following URL
14 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
15 # or in the file LICENSE.txt.
17 # As a counterpart to the access to the source code and rights to copy,
18 # modify and redistribute granted by the license, users are provided only
19 # with a limited warranty and the software's author, the holder of the
20 # economic rights, and the successive licensors have only limited
23 # The fact that you are presently reading this means that you have had
24 # knowledge of the CeCILL-B license and that you accept its terms.
25 # ------------------------------------------------------------------------
28 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
31 #include "bbcreaImageIOItkImagesChooserDialogBox.h"
32 #include "bbcreaImageIOPackage.h"
35 #include "itkImportImageFilter.h"
38 // -------------------------------------------------------------------------
39 // LFV: avoid itk::Concept check on 4d or superior images
40 #define BBCREAIMAGEIO_ChooserDlg_Template( t, ty, di ) \
41 if( t == typeid( itk::Image< ty, di >* ) ) \
43 this->Export< itk::Image< ty, di > >( ); \
44 this->ExportVTK< itk::Image< ty, di > >( ); \
48 // -------------------------------------------------------------------------
49 // LFV: avoid itk::Concept check on 4d or superior images
50 #define BBCREAIMAGEIO_ChooserDlg_Template( t, ty, di ) \
51 if( t == typeid( itk::Image< ty, di >* ) ) \
53 this->Export< ty , di >( ); \
54 this->ExportVTK< itk::Image< ty, di > >( ); \
58 // -------------------------------------------------------------------------
60 namespace bbcreaImageIO
63 BBTK_ADD_BLACK_BOX_TO_PACKAGE(creaImageIO,ItkImagesChooserDialogBox)
64 BBTK_BLACK_BOX_IMPLEMENTATION(ItkImagesChooserDialogBox,bbtk::AtomicBlackBox);
66 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
68 void ItkImagesChooserDialogBox::Process()
71 dlg = new creaImageIO::WxAnySimpleDlg(0,crea::std2wx(bbGetInputTitle()),"localdatabase_Descriptor.dscp","Local Database");
74 bbtk::TypeInfo typ = bbitk::GetITKImagePtrTypeInfoFromPixelTypeInfoAndDimension(*dlg->getTypes().front(), dlg->getDims().front());
76 BBCREAIMAGEIO_ChooserDlg_Template( typ, char, 1 )
77 else BBCREAIMAGEIO_ChooserDlg_Template( typ, short, 1 )
78 else BBCREAIMAGEIO_ChooserDlg_Template( typ, int, 1 )
79 else BBCREAIMAGEIO_ChooserDlg_Template( typ, long, 1 )
80 else BBCREAIMAGEIO_ChooserDlg_Template( typ, float, 1 )
81 else BBCREAIMAGEIO_ChooserDlg_Template( typ, double, 1 )
82 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned char, 1 )
83 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned short, 1 )
84 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned int, 1 )
85 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned long, 1 )
86 else BBCREAIMAGEIO_ChooserDlg_Template( typ, char, 2 )
87 else BBCREAIMAGEIO_ChooserDlg_Template( typ, short, 2 )
88 else BBCREAIMAGEIO_ChooserDlg_Template( typ, int, 2 )
89 else BBCREAIMAGEIO_ChooserDlg_Template( typ, long, 2 )
90 else BBCREAIMAGEIO_ChooserDlg_Template( typ, float, 2 )
91 else BBCREAIMAGEIO_ChooserDlg_Template( typ, double, 2 )
92 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned char, 2 )
93 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned short, 2 )
94 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned int, 2 )
95 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned long, 2 )
96 else BBCREAIMAGEIO_ChooserDlg_Template( typ, char, 3 )
97 else BBCREAIMAGEIO_ChooserDlg_Template( typ, short, 3 )
98 else BBCREAIMAGEIO_ChooserDlg_Template( typ, int, 3 )
99 else BBCREAIMAGEIO_ChooserDlg_Template( typ, long, 3 )
100 else BBCREAIMAGEIO_ChooserDlg_Template( typ, float, 3 )
101 else BBCREAIMAGEIO_ChooserDlg_Template( typ, double, 3 )
102 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned char, 3 )
103 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned short, 3 )
104 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned int, 3 )
105 else BBCREAIMAGEIO_ChooserDlg_Template( typ, unsigned long, 3 );
109 BBTK_TEMPLATE_ITK_IMAGE_SWITCH(typ, Export);
110 BBTK_TEMPLATE_ITK_IMAGE_SWITCH(typ, ExportVTK);
117 //template <class TImage>
118 template <typename ty, size_t di>
119 void ItkImagesChooserDialogBox::Export()
121 typedef itk::Image<ty,di> TImage;
123 printf("EED ItkImagesChooserDialogBox::Export Start \n");
124 if (dlg->getImagesSelected().size() == 1)
126 printf("EED ItkImagesChooserDialogBox::Export 1\n");
127 bbSetOutputOut( dlg->getTemplatedImagesSelected<TImage>().front().GetPointer() );
128 } else if (dlg->getImagesSelected().size() > 1){
129 printf("EED ItkImagesChooserDialogBox::Export 2\n");
130 OutputImagesITKType outVect;
131 typename std::vector<typename TImage::Pointer> tempImgs= dlg->getTemplatedImagesSelected<TImage>();
132 typename std::vector<typename TImage::Pointer>::iterator it = tempImgs.begin();
133 for(;it != tempImgs.end(); ++it)
135 outVect.push_back( (*it).GetPointer() );
137 bbSetOutputOutIImages( outVect);
139 //EED creater one 3D image from 2D list
140 // const unsigned int Dimension = 3;
141 // typedef itk::RGBPixel< unsigned char > RGBPixelType;
142 // typedef itk::Image< RGBPixelType, Dimension > RGBImageType;
143 // typedef itk::ImportImageFilter< RGBPixelType, Dimension > ImportFilterType;
145 // typedef itk::RGBPixel< ty > RGBPixelType;
146 typedef ty RGBPixelType;
147 typedef itk::ImportImageFilter< ty , di > ImportFilterType;
148 typename ImportFilterType::Pointer importFilter = ImportFilterType::New();
151 typename TImage::SizeType imsize;
152 // imsize[0] = img.width();
153 // imsize[1] = img.height();
154 imsize[0] = tempImgs[0].GetPointer()->GetLargestPossibleRegion().GetSize()[0];
155 imsize[1] = tempImgs[0].GetPointer()->GetLargestPossibleRegion().GetSize()[1];
156 imsize[2] = tempImgs.size();
157 printf("EED ItkImagesChooserDialogBox::Export 2.10\n");
159 typename ImportFilterType::IndexType start;
161 typename ImportFilterType::RegionType region;
162 region.SetIndex( start );
163 region.SetSize( imsize );
164 importFilter->SetRegion( region );
166 // const itk::SpacePrecisionType origin[ di ] = { 0.0, 0.0, 0.0 };
167 const itk::SpacePrecisionType origin[ 3 ] = { 0.0, 0.0, 0.0 };
168 importFilter->SetOrigin( origin );
170 // const itk::SpacePrecisionType spacing[ di ] = { 1.0, 1.0, 1.0 };
171 const itk::SpacePrecisionType spacing[ 3 ] = { 1.0, 1.0, 1.0 };
172 importFilter->SetSpacing( spacing );
173 const unsigned long int numberOfPixels2D = imsize[0]*imsize[1];
174 const unsigned long int numberOfPixels3D = imsize[0]*imsize[1]*imsize[2];
176 RGBPixelType * localBuffer = new RGBPixelType[ numberOfPixels3D ];
177 RGBPixelType * tmpLocalBuffer = localBuffer;
178 printf("EED ItkImagesChooserDialogBox::Export 2.20\n");
180 it = tempImgs.begin();
181 for(;it != tempImgs.end(); ++it)
183 printf("EED ItkImagesChooserDialogBox::Export 2.30\n");
184 memcpy(tmpLocalBuffer, (*it).GetPointer()->GetBufferPointer(), numberOfPixels2D);
185 tmpLocalBuffer = tmpLocalBuffer + numberOfPixels2D;
188 const bool importImageFilterWillOwnTheBuffer = true;
189 importFilter->SetImportPointer( localBuffer , numberOfPixels3D , importImageFilterWillOwnTheBuffer );
190 importFilter->Update();
191 importFilter->Register();
192 printf("EED ItkImagesChooserDialogBox::Export 2.40\n");
194 // bbSetOutputOut( (*tempImgs.begin()).GetPointer() );
195 // bbSetOutputOut( importFilter->GetOutput().unsafe_get<TImage*>() );
196 bbSetOutputOut( importFilter->GetOutput() );
197 printf("EED ItkImagesChooserDialogBox::Export 2.50\n");
200 printf("EED ItkImagesChooserDialogBox::Export 3\n");
201 // warning: passing NULL to non-pointer
202 //bbSetOutputOut( NULL);
203 bbSetOutputOut(0); // JPR
205 // FCY To test the Output
206 //typedef itk::Image <short, 3> ImageType;
207 //typedef itk::ImageFileReader< ImageType > itkReaderType;
208 // typename itkReaderType::Pointer reader = itkReaderType::New();
210 // reader->SetFileName("d:\test.hdr");
212 //reader->GetOutput()->Register();
213 // this->bbSetOutputOut(reader->GetOutput());
215 printf("EED ItkImagesChooserDialogBox::Export End \n");
220 template <class TImage>
221 void ItkImagesChooserDialogBox::ExportVTK()
223 printf("EED ItkImagesChooserDialogBox::ExportVTK Start \n");
225 // BBTK can support only a vector with same dimensions image.
226 if (dlg->getDims().front() < 4)
228 typename std::vector<typename TImage::Pointer> tempImgs= dlg->getTemplatedImagesSelected<TImage>();
229 typename std::vector<typename TImage::Pointer>::iterator it = tempImgs.begin();
230 for(;it != tempImgs.end(); ++it)
232 dlg->split3Din3Dvtk<TImage>( (*it) );
234 bbSetOutputOutVImages( dlg->getVtkImagesSelected() );
235 } else if (dlg->getDims().front() == 4) {
237 // dlg->split4Din3Dvtk("d:/temp2");
238 // bbSetOutputOutVImages( dlg->getVtkImagesSelected());
240 // NOT IMPLEMENTED YET FOR DIMENSIONS > 4
242 printf("EED ItkImagesChooserDialogBox::ExportVTK End \n");
246 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
248 void ItkImagesChooserDialogBox::bbUserSetDefaultValues()
253 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
255 void ItkImagesChooserDialogBox::bbUserInitializeProcessing()
260 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
262 void ItkImagesChooserDialogBox::bbUserFinalizeProcessing()
266 } // EO namespace bbcreaImageIO