2 # ---------------------------------------------------------------------
4 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
6 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
7 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
8 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
10 # This software is governed by the CeCILL-B license under French law and
11 # abiding by the rules of distribution of free software. You can use,
12 # modify and/ or redistribute the software under the terms of the CeCILL-B
13 # license as circulated by CEA, CNRS and INRIA at the following URL
14 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
15 # or in the file LICENSE.txt.
17 # As a counterpart to the access to the source code and rights to copy,
18 # modify and redistribute granted by the license, users are provided only
19 # with a limited warranty and the software's author, the holder of the
20 # economic rights, and the successive licensors have only limited
23 # The fact that you are presently reading this means that you have had
24 # knowledge of the CeCILL-B license and that you accept its terms.
25 # ------------------------------------------------------------------------
29 #include <creaImageIOGimmickView.h>
31 #include "boost/filesystem.hpp"
34 #include <gdcmGlobal.h>
35 #include <gdcmSerieHelper.h>
36 #include <gdcmFileHelper.h>
38 #include <vtkGdcmReader.h>
42 #include <vtkMetaImageWriter.h>
44 /*#if defined(USE_GDCM2)
45 #include <vtkGDCMImageReader.h>
46 #include "gdcmSystem.h"
47 #include "gdcmCryptographicMessageSyntax.h"
48 #include "gdcmUIDGenerator.h"
49 #include "gdcmAnonymizer.h"
50 #include "gdcmGlobal.h"
53 #pragma warning(disable: 4996)
56 namespace fs = boost::filesystem;
60 ///Class used to represent the actual state of the image selected and to perform comparisons on its values
64 ImageExtent(const std::string& x, const std::string& y, const std::string& z, const std::string& t)
66 sscanf(x.c_str(),"%d",&mExtent[0]);
67 sscanf(y.c_str(),"%d",&mExtent[1]);
68 sscanf(z.c_str(),"%d",&mExtent[2]);
69 sscanf(t.c_str(),"%d",&mExtent[3]);
70 if(x==""){mExtent[0]=1;}
71 if(y==""){mExtent[1]=1;}
72 if(z==""){mExtent[2]=1;}
73 if(t==""){mExtent[3]=1;}
75 if (mExtent[3]>1) mDim=4;
76 else if (mExtent[2]>1) mDim=3;
77 else if (mExtent[1]>1) mDim=2;
78 else if (mExtent[0]>1) mDim=1;
84 void Clear() { mExtent[0] = mExtent[1] = mExtent[2] = mExtent[3] = 1; }
86 ///Returns true if the two extents are compatible
87 bool IsCompatible( const ImageExtent& );
89 ///Adds the extent passed as a parameter to the current extent
90 void Add ( const ImageExtent& );
92 ///Returns the ieth position of the extent
93 int Get(int i) { return mExtent[i]; }
95 ///Returns the dimension of the current image
96 void SetDimension(int dim) { mDim=dim; }
98 ///Returns the dimension of the current image
99 int GetDimension() { return mDim; }
106 //======================================================================
108 //======================================================================
110 GimmickView::GimmickView(boost::shared_ptr<Gimmick> gimmick, int threads)
114 GimmickDebugMessage(1,"GimmickView::GimmickView"
116 // Anciently started the threads ...
117 // Threads now automatically start at first image request
121 //======================================================================
123 //======================================================================
125 GimmickView::~GimmickView()
127 GimmickDebugMessage(1,"GimmickView::~GimmickView"
130 //======================================================================
132 //======================================================================
133 /// Initializes the view :
134 /// Creates the TreeViews for all the TreeHandler of the Controller
136 void GimmickView::Initialize()
138 mReaderStarted=false;
140 //======================================================================
142 //======================================================================
144 void GimmickView::Finalize()
148 //======================================================================
150 //======================================================================
151 /// Create the tree views
152 void GimmickView::CreateTreeViews()
154 GimmickMessage(2,"Creating the tree views"<<std::endl);
155 Gimmick::TreeHandlerMapType::const_iterator i;
156 for (i = mGimmick->GetTreeHandlerMap().begin();
157 i!= mGimmick->GetTreeHandlerMap().end();
160 this->CreateTreeView(i->second);
164 /// Create a tree view with a given name
165 void GimmickView::CreateSingleTreeView(std::string &i_name)
167 this->CreateTreeView(mGimmick->GetTreeHandlerMap()[i_name]);
172 //======================================================================
174 //======================================================================
175 /// Updates the TreeView of given name from level l to bottom
176 /// (calls the virtual method TreeView::Update())
177 void GimmickView::UpdateTreeViewLevel(const std::string& t, int l)
179 TreeViewMapType::iterator i;
180 i = GetTreeViewMap().find(t);
181 if ( i == GetTreeViewMap().end() )
183 GimmickError("INTERNAL ERROR : GimmickView::UpdateTreeView : '"
184 <<t<<"' is not in TreeViewMap");
186 i->second->UpdateLevel(l);
189 //======================================================================
190 /// Clears the status and begins a new selection process
191 void GimmickView::ResetExtent()
195 mImageExtent.reset();
200 //======================================================================
202 //======================================================================
203 bool ImageExtent::IsCompatible(const ImageExtent& ie)
205 bool compatible=true;
206 ImageExtent * extent= (ImageExtent*)&ie;
207 if((*extent).Get(0)!=Get(0)
208 || (*extent).Get(1)!=Get(1))
215 //======================================================================
217 //======================================================================
218 void ImageExtent::Add(const ImageExtent& ie)
220 ImageExtent * extent= (ImageExtent*)&ie;
221 mExtent[2]+=(*extent).Get(2);
228 //======================================================================
229 /// No selected image
230 bool GimmickView::NoValidateSelected ()
232 GimmickDebugMessage(2,"Validating selected"<<std::endl);
233 std::string mMessage;
234 mMessage="Cannot have 0 images selected!";
236 modifyValidationSignal(valid);
237 SetMessage(mMessage);
241 //======================================================================
242 ///Validates the dimension compliance of the images with the maximum and
243 ///minimum given, and between their sizes
244 bool GimmickView::ValidateSelected (tree::Node* sel, int min_dim, int max_dim)
246 GimmickDebugMessage(2,"Validating selected"<<std::endl);
247 std::string mMessage;
251 mMessage="Cannot have 0 images selected!";
256 boost::shared_ptr<ImageExtent> ie=boost::shared_ptr<ImageExtent>(new ImageExtent((*sel).GetAttribute("D0028_0010"),
257 (*sel).GetAttribute("D0028_0011"),
258 (*sel).GetAttribute("D0028_0012"),
264 if((mImageExtent->Get(min_dim-1)<2)||(mImageExtent->Get(max_dim)>1))
270 std::stringstream out;
271 out << mImageExtent->GetDimension() << "D image " << mImageExtent->Get(0) << "x"<< mImageExtent->Get(1) << "x"<< mImageExtent->Get(2) <<" selected";
272 mMessage = out.str();
273 mImageExtent->SetDimension(2);
279 if(mImageExtent->IsCompatible(*ie))
281 if(mImageExtent->GetDimension()==max_dim && mImageExtent->Get(max_dim)>2)
283 std::stringstream out;
284 out<<"Cannot add this image to selection : would result in a "<<mImageExtent->GetDimension()+1<<"D image!";
290 std::stringstream out;
291 out<<"Selecting "<<mImageExtent->GetDimension()<<"D images is not allowed !";
295 else if(min_dim==3 && (ie->Get(2)+mImageExtent->Get(2))<2)
297 std::stringstream out;
298 out << "Cannot build the selection as it would result in a ";
299 out << mImageExtent->GetDimension();
300 out << "D image, and the minimum is ";
308 mImageExtent->Add(*ie);
309 std::stringstream out;
310 out << mImageExtent->GetDimension() << "D image " << mImageExtent->Get(0) << "x"<< mImageExtent->Get(1) << "x"<< mImageExtent->Get(2) <<" selected";
311 mMessage = out.str();
316 mMessage="The selected images are not compatible.";
322 modifyValidationSignal(valid);
323 SetMessage(mMessage);
327 //======================================================================
328 void GimmickView::modifyValidationSignal(bool ivalid)
331 mValidationSignal(ivalid);
334 void GimmickView::stopReader()
339 //======================================================================
340 ///Reads Images (Non Threaded)
341 void GimmickView::ReadImagesNotThreaded(std::vector<vtkImageData*>& s, std::vector<std::string> im, int dimension)
346 #define GIMMICK_NO_IMAGE_SELECTION 0
347 #define GIMMICK_2D_IMAGE_SELECTION 2
348 #define GIMMICK_3D_IMAGE_SELECTION 3
349 #define GIMMICK_4D_IMAGE_SELECTION 4
356 // Create the output data
359 vtkImageData * out=vtkImageData::New();
360 out->ShallowCopy(mReader.GetImage(im.front()));
363 else if (im.size()>1) // Test inutile ? JPR
365 vtkImageData* first = mReader.GetImage( im.front());
369 std::vector<std::string>::iterator it;
370 for (it=im.begin(); it!=im.end(); ++it)
372 vtkImageData* out = vtkImageData::New();
373 out->ShallowCopy(mReader.GetImage(*it));
380 vtkImageData* out = vtkImageData::New();
381 // out->CopyStructure(first);
383 //first->GetExtent(ext); // JPR
384 //EED 2017-01-01 Migration VTK7
385 #if VTK_MAJOR_VERSION <= 5
386 first->GetWholeExtent(ext); // renvoie egalement 0,0 en Z // JPR
388 first->GetExtent(ext); // renvoie egalement 0,0 en Z // JPR
393 ext[5] = (int)im.size()-1;
397 ext[5] = ext[5] * (int)im.size()-1; // to deal with multiframes - JPR
401 // LG : TODO : Z Spacing ?
404 first->GetDimensions(dim);
405 out->SetDimensions(dim[0], dim[1], (int)im.size() );
407 //EED 2017-01-01 Migration VTK7
408 #if VTK_MAJOR_VERSION <= 5
409 out->SetScalarType(first->GetScalarType());
410 out->SetNumberOfScalarComponents(first->GetNumberOfScalarComponents());
411 out->AllocateScalars();
414 out->AllocateScalars(first->GetScalarType(),first->GetNumberOfScalarComponents());
417 unsigned long imsize = dim[0] * dim[1];
418 imsize = imsize * dim[2] ; // deal with multiframes // JPR
422 // differents formats char , short, etc...
423 // differents components 1..3 ex. jpg ->RGB 3
424 imsize = imsize * first->GetScalarSize() * first->GetNumberOfScalarComponents();
427 // Order the file name vector
430 first->GetSpacing(spc);
432 // OrderTheFileNameVector is not here anymore.
433 // Try orderFilesWithZSpacing from OutputModel FCY
434 // spc[2]=OrderTheFileNameVector(im);
437 out->SetSpacing(spc);
440 std::vector<std::string>::iterator it;
442 for (it=im.begin(); it!=im.end(); ++it)
444 vtkImageData* cur = mReader.GetImage( (*it) );
445 memcpy(out->GetScalarPointer(0,0,slice), cur->GetScalarPointer(0,0,0), imsize);
455 //======================================================================
459 //////////////////////////////////////////////////////////
460 // Test if the image is a multiple or single frame.
461 // For the moment only with the creation of vtkImageDta.
462 // TO DO with image size and dim!!!
463 //////////////////////////////////////////////////////////
464 bool GimmickView::isSingle(const std::string i_file)
467 vtkImageData* first = mReader.GetImage( i_file);
469 first->GetDimensions(dim);
480 //////////////////////////////////////////////////////////
481 // get Attributes values for a file
482 //////////////////////////////////////////////////////////
484 void GimmickView::getAttributes(const std::string i_file, std::map<std::string, std::string> &o_infos, OutputAttr i_attr)
486 if(i_attr.inside.size() >0)
488 mGimmick->GetAttributes(i_file,o_infos,i_attr);
490 if(i_attr.outside.size()>0)
492 mReader.getAttributes(i_file,o_infos, i_attr.outside);
496 //////////////////////////////////////////////////////////
497 // create an output structure with n entries = n output
498 //////////////////////////////////////////////////////////
499 void GimmickView::readImages1(std::vector<OutStrGimmick>& o_output, std::vector<std::string> im,
502 i_attr.outside.push_back("D0019_100a"); // simens Number Of Images In Mosaic
503 std::vector<std::string>::iterator it;
504 for (it=im.begin(); it!=im.end(); ++it)
507 out.img = vtkImageData::New();
508 out.img->ShallowCopy(mReader.GetImage(*it));
511 getAttributes((*it),out.infos,i_attr);
513 o_output.push_back(out);
515 // If we want only one output information structure, we set it outside the loop
518 getAttributes(im.front(), o_output.front().infos, i_attr);
523 //////////////////////////////////////////////////////////
524 // create an output structure with n entries = 1 output
525 //////////////////////////////////////////////////////////
526 void GimmickView::readImages3(std::vector<OutStrGimmick>& o_output, std::vector<std::string> im,
527 OutputAttr i_attr, double i_zspc)
530 vtkImageData* first = mReader.GetImage( im.front());
531 out.img = vtkImageData::New();
533 //EED 2017-01-01 Migration VTK7
534 #if VTK_MAJOR_VERSION <= 5
535 first->GetWholeExtent(ext); // send also 0,0 in Z
537 first->GetExtent(ext); // send also 0,0 in Z
541 ext[5] = (int)im.size()-1;
543 ext[5] = ext[5] * (int)im.size()-1; // to deal with multiframes
545 out.img->SetExtent(ext);
548 first->GetDimensions(dim);
549 first->GetSpacing(spac);
550 out.img->SetSpacing(spac);
551 out.img->SetDimensions(dim[0], dim[1], (int)im.size() );
555 //EED 2017-01-01 Migration VTK7
556 #if VTK_MAJOR_VERSION <= 5
557 out.img->SetScalarType(first->GetScalarType());
558 out.img->SetNumberOfScalarComponents(first->GetNumberOfScalarComponents());
559 out.img->AllocateScalars();
562 out.img->AllocateScalars(first->GetScalarType(), first->GetNumberOfScalarComponents());
566 unsigned long imsize = dim[0] * dim[1];
567 imsize = imsize * dim[2] ; // deal with multiframes here
568 // differents formats char , short, etc...
569 // differents components 1..3 ex. jpg ->RGB 3
570 imsize = imsize * first->GetScalarSize() * first->GetNumberOfScalarComponents();
571 // Order the file name vector already did with the OutputModel!!!
572 //!!!!out.img->SetSpacing(i_zspc);
574 std::vector<std::string>::iterator it;
575 for (it=im.begin(); it!=im.end(); ++it)
577 vtkImageData* cur = mReader.GetImage( (*it) );
578 memcpy(out.img->GetScalarPointer(0,0,slice), cur->GetScalarPointer(0,0,0), imsize);
582 getAttributes(im.front(),out.infos, i_attr);
583 o_output.push_back(out);
587 // TO DO NO VERY SURE : NEED TO BE TESTED
588 //////////////////////////////////////////////////////////
589 // create an output structure with n entries (T size) = T output (n size)
590 //////////////////////////////////////////////////////////
591 void GimmickView::readImages2(std::vector<OutStrGimmick>& o_output, std::vector<std::string> im,
592 OutputAttr i_attr, double i_zspc)
594 vtkImageData* first = mReader.GetImage( im.front());
597 first->GetDimensions(dim);
598 first->GetSpacing(spac);
599 // differents formats char , short, etc...
600 // differents components 1..3 ex. jpg ->RGB 3
601 unsigned long imsize = dim[0] * dim[1];
602 imsize = imsize * first->GetScalarSize() * first->GetNumberOfScalarComponents();
604 // Order the file name vector already did with the OutputModel!!!
605 std::vector<std::string>::iterator it;
606 std::vector<OutStrGimmick>::iterator it_out = o_output.begin();
608 for (it=im.begin(); it!=im.end(); ++it)//, it_out ++)
610 vtkImageData* cur = mReader.GetImage( (*it) );
611 for (int slice= 0 ; slice <dim[2]; slice++)
614 out.img = vtkImageData::New();
615 out.img->SetSpacing(spac);
617 //EED 2017-01-01 Migration VTK7
618 #if VTK_MAJOR_VERSION <= 5
619 first->GetWholeExtent(ext); // send also 0,0 in Z
621 first->GetExtent(ext); // send also 0,0 in Z
624 out.img->SetExtent(ext);
625 out.img->SetDimensions(dim[0], dim[1], 1 );
627 //EED 2017-01-01 Migration VTK7
628 #if VTK_MAJOR_VERSION <= 5
629 out.img->SetScalarType(first->GetScalarType());
630 out.img->SetNumberOfScalarComponents(first->GetNumberOfScalarComponents());
631 out.img->AllocateScalars();
634 out.img->AllocateScalars(first->GetScalarType(),first->GetNumberOfScalarComponents());
638 memcpy(out.img->GetScalarPointer(0,0,0), cur->GetScalarPointer(0,0,slice), imsize);
639 o_output.push_back(out);
642 // getAttributes((*it),(*it_out).infos,i_attr);
646 getAttributes(im.front(), o_output.front().infos,i_attr);
651 //////////////////////////////////////////////////////////
652 // create an output structure with n entries (T size) = T + n output
653 //////////////////////////////////////////////////////////
654 void GimmickView::readImages4(std::vector<OutStrGimmick>& o_output, std::vector<std::string> im,
657 std::vector<std::string>::iterator it;
658 std::vector<OutStrGimmick>::iterator it_out = o_output.begin();
659 vtkImageData* first = mReader.GetImage( im.front());
661 first->GetDimensions(dim);
663 for (int slice= 0 ; slice <dim[2]; slice++)
666 out.img = vtkImageData::New();
670 //EED 2017-01-01 Migration VTK7
671 #if VTK_MAJOR_VERSION <= 5
672 first->GetWholeExtent(ext); // send also 0,0 in Z
674 first->GetExtent(ext); // send also 0,0 in Z
679 out.img->SetExtent(ext);
680 first->GetSpacing(spac);
681 out.img->SetSpacing(spac);
682 out.img->SetDimensions(dim[0], dim[1], (int)im.size() );
684 //EED 2017-01-01 Migration VTK7
685 #if VTK_MAJOR_VERSION <= 5
686 out.img->SetScalarType(first->GetScalarType());
687 out.img->SetNumberOfScalarComponents(first->GetNumberOfScalarComponents());
688 out.img->AllocateScalars();
691 out.img->AllocateScalars(first->GetScalarType(), first->GetNumberOfScalarComponents());
694 unsigned long imsize = dim[0] * dim[1];
695 imsize = imsize * first->GetScalarSize() * first->GetNumberOfScalarComponents();
698 for (it=im.begin(); it!=im.end(); ++it, index ++)
700 vtkImageData* cur = mReader.GetImage( (*it) );
701 memcpy(out.img->GetScalarPointer(0,0,index), cur->GetScalarPointer(0,0,slice), imsize);
702 o_output.push_back(out);
705 if(!i_attr.mult) // No sense to take informations in all images
707 getAttributes(im.front(), o_output.front().infos,i_attr);
713 //////////////////////////////////////////////////////////////////////////////////////////////////////////////
714 // Global function to read Images and create wished output (informations, multiple, type and size of output...)
715 // In function of type (file, vector) and size, the correct readImages function is selected
716 //////////////////////////////////////////////////////////////////////////////////////////////////////////////
717 void GimmickView::readImages(std::vector<OutStrGimmick>& o_output, std::vector<std::string> im,
718 OutputAttr i_attr, int i_dim, double i_zspc)
720 int size = (int)im.size();
724 } else if (size == 1) {
726 // Only one image : give it
727 // But take in count multiframe possibility
728 if ( isSingle(im.front()) || i_dim != 1)
730 readImages1(o_output,im, i_attr);
732 readImages2(o_output,im, i_attr,i_zspc);
735 // multiple or single frame
736 if ( isSingle(im.front()) )
738 //we deal with 2D images
742 readImages3(o_output,im, i_attr,i_zspc);
744 readImages1(o_output,im, i_attr);
747 // we deal with multiple frames n x (2D x T)
748 // Differents outputs are avaialable
751 // put all in one output
752 readImages3(o_output,im, i_attr,i_zspc);
753 } else if( i_dim == 2) {
754 // put in a vector of n x T (2D)
755 readImages2(o_output,im, i_attr,i_zspc);
756 } else if( i_dim == 3) {
757 // put in a vector of n (2D x T)
758 // No transformations.
759 readImages1(o_output,im, i_attr);
761 // put in a vector of T (2D x n)
762 readImages4(o_output,im, i_attr);
764 } //isSingle(im.front())
767 //EED UnMosaic step...
768 //How to verifie if is a mosaic file , with how many images inside??
774 void GimmickView::ReadImagesNotThreadedInVector(std::vector<vtkImageData*>& s, std::vector<std::string> im, int dimension)
776 // Create the output data
779 // Only one image : give it
780 vtkImageData* out = vtkImageData::New();
781 GimmickDebugMessage(3, "State Check: Full Filename: "
784 out->ShallowCopy(mReader.GetImage(im.front()));
787 else if (im.size()>1) // Test inutile ? JPR
789 /// \TODO fix unused variable 'first'
790 // vtkImageData* first = mReader.GetImage( im.front());
794 std::vector<std::string>::iterator it;
795 for (it=im.begin(); it!=im.end(); ++it)
797 vtkImageData* out = vtkImageData::New();
798 out->ShallowCopy(mReader.GetImage(*it));
803 // n *2D + T in a vector :
805 std::vector<std::string>::iterator it;
806 for (it=im.begin(); it!=im.end(); ++it)
808 vtkImageData* out = mReader.GetImage( (*it));
814 //======================================================================
816 //======================================================================
817 ///Requests the reading of an image
818 void GimmickView::RequestReading(tree::Node* n,
819 int prio, int selection_index, boost::shared_ptr<ImagePointerHolder> p)
826 ImageEventType t(n,selection_index);
828 mImageEventMap[n->GetAttribute("FullFileName")] = t;
829 mReader.Request(this,n->GetAttribute("FullFileName"),prio);
831 //======================================================================
833 //======================================================================
835 OnMultiThreadImageReaderEvent(const std::string& filename,
836 MultiThreadImageReaderUser::EventType e,
839 GimmickDebugMessage(7,
840 "MultiThreadImageReader event : "<<e<<std::endl);
843 if (filename.size()==0)
845 //What to do in this case?
847 GimmickDebugMessage(5,
848 "Pushing unknown image in queue"
850 mImageEventQueue.push_back(ImageEventType(image));*/
853 ImageEventTypeMap::iterator i;
854 //JCP 22-06-2009, test mImageEventMap.size() > 0
855 if(mImageEventMap.size()>0){
856 i = mImageEventMap.find(filename);
857 if (i!=mImageEventMap.end())
859 GimmickDebugMessage(5,
860 "Putting image of file '"<<filename<<"' on pointer"
862 ImageEventType ie(i->second);
864 ie.pointerHolder->Set(ie.image);
865 //mImageEventMap.erase(i);
871 std::string mess="ERROR: MultiThreadImageReader: Cannot read image in file ";
874 GimmickMessage(1,mess);
875 ImageEventTypeMap::iterator i;
876 i = mImageEventMap.find(filename);
877 if (i!=mImageEventMap.end())
879 ImageEventType ie(i->second);
881 ie.pointerHolder->Set(GetDefaultImage());
882 //mImageEventMap.erase(i);
886 else if (e==ImageUnloaded)
888 std::string mess="Unloaded image in file ";
891 GimmickMessage(1,mess);
892 ImageEventTypeMap::iterator i;
893 i = mImageEventMap.find(filename);
894 if (i!=mImageEventMap.end())
896 ImageEventType ie(i->second);
898 ie.pointerHolder->Set(GetDefaultImage());
899 //mImageEventMap.erase(i);
904 //====================================================================
906 //====================================================================
907 void GimmickView::ConnectValidationObserver(ValidationCallbackType callback)
909 mValidationSignal.connect(callback);
913 #if defined(USE_GDCM)
914 ////////////////////////////////////////////////////////////////////////
915 void GimmickView::Anonymize(std::vector<std::string> i_filenames, int type)
918 std::vector<GDCM_NAME_SPACE::FileHelper *> filesH;
919 std::vector<std::string> suid;
920 std::map<std::string, std::string> msuid;
921 std::string tempuid = GDCM_NAME_SPACE::Util::CreateUniqueUID();
923 std::vector<std::string>::iterator it = i_filenames.begin();
924 for(; it != i_filenames.end(); it++)
927 GDCM_NAME_SPACE::File *file;
928 file = GDCM_NAME_SPACE::File::New( );
929 file->SetLoadMode( GDCM_NAME_SPACE::LD_ALL );
930 file->SetFileName( (*it).c_str() );
934 std::cerr << "Sorry, " << (*it).c_str() <<" not a gdcm-readable "
935 << "DICOM / ACR File" <<std::endl;
939 std::cout << " ... is readable " << std::endl;
941 // We need a gdcm::FileHelper, since we want to load the pixels
942 GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(file);
945 //EED uint8_t *imageData = fh->GetImageData();
948 file->AddAnonymizeElement(0x0008, 0x0080, "*");
950 file->AddAnonymizeElement(0x0010, 0x0010, "*");
952 file->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
953 // Study Instance UID
954 file->AddAnonymizeElement(0x0020, 0x000d, tempuid );
956 file->AddAnonymizeElement(0x0010, 0x2154, "3615" );
958 // Aware user will add here more fields to anonymize here
960 // The gdcm::File is modified in memory
962 file->AnonymizeFile();
966 fh->SetContentType(GDCM_NAME_SPACE::UNMODIFIED_PIXELS_IMAGE);
968 fh->WriteDcmExplVR(file->GetFileName() +".ano1" );
969 std::cout << i <<" End Anonymize" << std::endl;
970 file->ClearAnonymizeList();
976 #if defined(USE_GDCM2)
977 void GimmickView::Anonymize(std::vector<std::string> i_filenames, int type)
981 ////////////////////////////////////////////////////////////////////////
982 //void GimmickView::Anonymize(std::vector<std::string> i_filenames, int type)
985 // gdcm::FileMetaInformation::SetSourceApplicationEntityTitle( "gdcmanon" );
986 // gdcm::Global& g = gdcm::Global::GetInstance();
987 // //if( !resourcespath )
989 // // const char *xmlpathenv = getenv("GDCM_RESOURCES_PATH");
990 // // if( xmlpathenv )
992 // // // Make sure to look for XML dict in user explicitly specified dir first:
993 // // xmlpath = xmlpathenv;
994 // // resourcespath = 1;
997 // // if( resourcespath )
999 // // // xmlpath is set either by the cmd line option or the env var
1000 // // if( !g.Prepend( xmlpath.c_str() ) )
1002 // // std::cerr << "Specified Resources Path is not valid: " << xmlpath << std::endl;
1006 // // All set, then load the XML files:
1007 // if( !g.LoadResourcesFiles() )
1011 // const gdcm::Defs &defs = g.GetDefs(); (void)defs;
1014 // // only read the env var if no explicit cmd line option
1015 // // maybe there is an env var defined... let's check
1016 // const char *rootuid_env = getenv("GDCM_ROOT_UID");
1017 // if( rootuid_env )
1020 // root = rootuid_env;
1025 // // root is set either by the cmd line option or the env var
1026 // if( !gdcm::UIDGenerator::IsValid( root.c_str() ) )
1028 // std::cerr << "specified Root UID is not valid: " << root << std::endl;
1031 // gdcm::UIDGenerator::SetRoot( root.c_str() );
1036 // // Get private key/certificate
1037 // gdcm::CryptographicMessageSyntax cms;
1040 // if( !GetRSAKeys(cms, rsa_path.c_str(), cert_path.c_str() ) )
1044 // cms.SetCipherType( ciphertype );
1047 // // Setup gdcm::Anonymizer
1048 // gdcm::Anonymizer anon;
1050 // anon.SetCryptographicMessageSyntax( &cms );
1054 // for(unsigned int i = 0; i < nfiles; ++i)
1056 // const char *in = filenames[i].c_str();
1057 // const char *out = outfilenames[i].c_str();
1058 // if( !AnonymizeOneFileDumb(anon, in, out, empty_tags, remove_tags, replace_tags_value) )
1060 // //std::cerr << "Could not anonymize: " << in << std::endl;
1067 // // for(unsigned int i = 0; i < nfiles; ++i)
1069 // // const char *in = filenames[i].c_str();
1070 // // const char *out = outfilenames[i].c_str();
1071 // // if( !AnonymizeOneFile(anon, in, out) )
1073 // // //std::cerr << "Could not anonymize: " << in << std::endl;
1081 } // EO namespace creaImageIO