lib/maracasVisuLib/src/interface/wxWindows/Contour/ContourExtractData.cxx

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 #include "ContourExtractData.h"
  27
  28
  29 //----------------------------------------------------------------------
  30 ContourExtractData::ContourExtractData( bool okImagesResults)
  31 {
  32         this->imagedata                 = NULL;
  33         imagedataValueResult    = NULL;
  34         imagedataMaskResult             = NULL;
  35         this->okImagesResults   = okImagesResults;
  36         _typeOperation                  = 0;
  37 }
  38
  39 // ------------------------------------------------------------------------
  40
  41 ContourExtractData::~ContourExtractData()
  42 {
  43 }
  44
  45
  46 //----------------------------------------------------------------------
  47 void ContourExtractData::SetImage( vtkImageData* imagedata)
  48 {
  49         this->imagedata                 = imagedata;
  50         this->imagedata->GetScalarRange(scalarRange);
  51
  52         // RaC 20-11-09 Changes in InitLstContoursLinesYPoints
  53         int ext[6];
  54         this->imagedata->GetWholeExtent(ext);
  55         _sizeImageY = ext[3]-ext[2]+1;
  56
  57         // init vtk image result : valuesImage maskImage
  58         if (this->okImagesResults==true){  InitVtkImagesResult(); }
  59 }
  60 //----------------------------------------------------------------------
  61 void ContourExtractData::SetZtoBeAnalys( int z )
  62 {
  63         this->zImage                    = z;
  64 }
  65
  66 //------------------------------------------------------------------------
  67 void ContourExtractData::SetLstManualContourModel( std::vector<manualBaseModel*> lstManConMod)
  68 {
  69         this->lstManConMod = lstManConMod;
  70 }
  71
  72
  73 //------------------------------------------------------------------------
  74 void ContourExtractData::GetMinMaxPoint(int *minPoint,
  75                                                                                 int *maxPoint,
  76                                                                                 manualBaseModel *manualcontourmodel
  77                                                                                 )
  78 {
  79         int i;
  80         //int   np              = manualcontourmodel->GetSizeLstPoints( );  // number of control points // JPRx
  81
  82         // JSTG 26-02-08 ---------------------------------------------------------------------------------------
  83         //int nps = manualviewbaseecontour->GetNumberOfPointsSpline(); // number of points in the spline
  84         int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
  85         //------------------------------------------------------------------------------------------------------
  86
  87         // JSTG 26-02-08 ---------------------------------------------------------------------------------------
  88         //double x,y,z,t;
  89         double x,y,z;
  90         //double delta=( double ) ( np  ) / ( double ) ( nps  );
  91         manualcontourmodel->UpdateSpline();
  92         for (i=0; i<nps; i++)
  93         {
  94                 //t= delta * (double)i;
  95                 //manualcontourmodel->GetSplinePoint(t,x,y,z);
  96                 manualcontourmodel->GetSpline_i_Point(i,&x,&y,&z);
  97                 if (x<minPoint[0]){ minPoint[0]=(int)x; }
  98                 if (y<minPoint[1]){ minPoint[1]=(int)y; }
  99                 if (x>maxPoint[0]){ maxPoint[0]=(int)x; }
 100                 if (y>maxPoint[1]){ maxPoint[1]=(int)y; }
 101         }
 102         minPoint[0]--;
 103         minPoint[1]--;
 104         maxPoint[0]++;
 105         maxPoint[1]++;
 106         //------------------------------------------------------------------------------------------------------
 107 }
 108
 109 //------------------------------------------------------------------------
 110 void ContourExtractData::GetMinMaxPoint_Of_LstManConMod(        int *minPoint,
 111                                                                                                                 int *maxPoint
 112                                                                                                                 )
 113
 114 {
 115         int i,size = lstManConMod.size();
 116
 117         for(i=0 ; i<size ; i++)
 118         {
 119                 GetMinMaxPoint(minPoint,maxPoint,lstManConMod[i]);
 120         }
 121 }
 122
 123
 124 //------------------------------------------------------------------------
 125 int ContourExtractData::AnalisisContourInsideV2(int x, int y, int iContour )
 126 {
 127         bool inBorder=false;
 128         int result      = 0;
 129         int i;
 130
 131         int nps=_lstlstlstVecX1[iContour][y].size();
 132
 133         double x1,y1,x2,y2;
 134         double borderX, borderY;
 135         double xx1, yy1,xx2, yy2;
 136         double xx=x, yy=y;
 137         double d;
 138
 139         for (i=0; i<nps; i++)
 140         {
 141                 x1=_lstlstlstVecX1[iContour][y][i];
 142                 y1=_lstlstlstVecY1[iContour][y][i];
 143                 x2=_lstlstlstVecX2[iContour][y][i];
 144                 y2=_lstlstlstVecY2[iContour][y][i];
 145
 146                 borderX=x1;
 147                 borderY=y1;
 148
 149                 if (y1<y2)
 150                 {
 151                         xx1=x1; yy1=y1; xx2=x2; yy2=y2;
 152                 } else {
 153                         xx1=x2; yy1=y2; xx2=x1; yy2=y1;
 154                 }
 155
 156                 double difxx2xx1=fabs(xx2-xx1);
 157                 if (difxx2xx1==0) difxx2xx1=0.0000000001;
 158
 159                 // Finding border looking in vertical direction  AND  verifing if pixel is at right of the line
 160                 if  ( (yy>=yy1)&&(yy<=yy2) )
 161                 {
 162                         //by triangle similarity
 163                         d = ( fabs(xx2-xx1)*(yy-yy1) ) / (yy2-yy1) ;
 164                         if ( (xx1<=xx2)&&(x<(xx1+d)) )  {       result++;       }
 165                         if ( (xx1>xx2)&&(x<(xx1-d)) )   {       result++;       }
 166
 167                         if ( (yy2-yy1)/difxx2xx1 >= 1.0)
 168                         {
 169                                 if (xx1<=xx2)
 170                                 {
 171                                         borderX = xx1+d;
 172                                         borderY = y;
 173                                 } else {
 174                                         borderX = xx1-d;
 175                                         borderY = y;
 176                                 }
 177                         }
 178                 } // if point inside y
 179
 180
 181                 // Finding border looking in vertical direction
 182                 if ( ((xx1<=xx2)&&(xx>=xx1)&&(xx<xx2)) || ((xx1>xx2)&&(xx>=xx2)&&(xx<xx1)) )
 183                 {
 184                         if ( (yy2-yy1)/difxx2xx1 <= 1.0)
 185                         {
 186                                 //by triangle similarity
 187                                 d = ( fabs(xx1-xx)*(yy2-yy1) ) / difxx2xx1;
 188                                 if (yy1+d<=yy2) {
 189                                         borderX=x;
 190                                         borderY=yy1+d;
 191                                 }
 192                         }
 193                 } // if point inside x
 194
 195
 196                 //Border verification
 197                 if (   (x==(int)borderX) && (y==(int)borderY)   )  { inBorder=true; }// if point in border
 198
 199                 // Verification : border in horizontal line
 200                 if ( ((int)y1==(int)y2)  &&  ((int)y1==y) && (x1<x2) && (x>=x1) && (x<=x2))             { inBorder=true;        }
 201                 if ( ((int)y1==(int)y2)  &&  ((int)y1==y) && (x2<x1) && (x>=x2) && (x<=x1))             { inBorder=true;        }
 202
 203                 if (inBorder==true){ i=nps; }
 204         } // for i
 205
 206         if (inBorder==true)     { result=1;     }
 207
 208         return result;
 209 }
 210
 211
 212
 213 //------------------------------------------------------------------------
 214 // typeOperation=0 AND
 215 // typeOperation=1 OR
 216 // typeOperation=2 XOR
 217 bool ContourExtractData::isInside(int x, int y, int typeOperation)
 218 {
 219         bool result                             = false;
 220         int numberLeft                  = 0;
 221         int i,size                              = this->lstManConMod.size();
 222         int numberInside        = 0;
 223
 224         /* RaC 20-11-09 (C1) Changes to use the method without the image.
 225         int ext[6];
 226         imagedata->GetExtent(ext);
 227
 228         if ((x>=0) && (x<=ext[1]) && (y>=0) && (y<=ext[3]))
 229         {
 230         */
 231
 232         if (typeOperation==0)  // AND  Intersection
 233         {
 234                 for (i=0;i<size;i++)
 235                 {
 236                         // To process the statistics of the Points contour the procedure is different
 237                         // RaC 19-09-09
 238                         manualBaseModel *mbm = lstManConMod[i];
 239                         if(mbm->GetTypeModel()==7)
 240                         {
 241                                 if(mbm->IsPoint(x,y)==true)
 242                                 {
 243                                         numberLeft=1;
 244                                 }
 245                         }//if
 246                         else
 247                         {
 248                                 numberLeft =  AnalisisContourInsideV2(x,y, i );
 249                         }//else
 250
 251                         if ( (numberLeft % 2) ==1){         numberInside++;  }
 252                 }
 253                 if ( numberInside == (size) ){ result=true; }
 254         } // AND  Intersection
 255
 256         numberLeft=0;
 257
 258         if (typeOperation==1)  // OR  All
 259         {
 260                 for (i=0;i<size;i++)
 261                 {
 262                         // To process the statistics of the Points contour the procedure is different
 263                         // RaC 19-09-09
 264                         manualBaseModel *mbm = lstManConMod[i];
 265                         if(mbm->GetTypeModel()==7)
 266                         {
 267                                 if(mbm->IsPoint(x,y)==true)
 268                                 {
 269                                         numberLeft=1;
 270                                 }
 271                         }//if
 272                         else
 273                         {
 274                                 numberLeft =  AnalisisContourInsideV2(x,y, i );
 275                         }//else
 276                         if ( (numberLeft % 2) ==1){ result=true;  }
 277                 }
 278         } // OR  All
 279
 280         numberLeft=0;
 281
 282         if (typeOperation==2)  // XOR  crown
 283         {
 284                 for (i=0;i<size;i++)
 285                 {
 286                         // To process the statistics of the Points contour the procedure is different
 287                         // RaC 19-09-09
 288                         manualBaseModel *mbm = lstManConMod[i];
 289                         if(mbm->GetTypeModel()==7)
 290                         {
 291                                 if(mbm->IsPoint(x,y)==true)
 292                                 {
 293                                         numberLeft=1;
 294                                 }
 295                         }//if
 296                         else
 297                         {
 298                                 numberLeft =  numberLeft + AnalisisContourInsideV2(x,y, i );
 299                         }//else
 300
 301                 }
 302                 if ( numberLeft % 2 ==1){       result = true;  }
 303         }// XOR  crown
 304
 305
 306
 307         //RaC }
 308
 309         return result;
 310 }
 311
 312 //------------------------------------------------------------------------
 313
 314 double ContourExtractData::GetDataValue(int x, int y, int z)
 315 {
 316         //      wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)wxvtkbaseview;
 317         //      int z = (int)wxvtk2dbaseview->GetVtkBaseData()->GetZ();
 318         //JSTG 13-03-08-----
 319         //EED OJO avec JS       _zz = z;
 320         //------------------
 321         double result;
 322         void *p;
 323         p = imagedata->GetScalarPointer(x,y,z);
 324
 325         if (imagedata->GetScalarType()==VTK_CHAR)
 326         {
 327                 char *pp = (char*)p;
 328                 result = (double)(*pp);
 329         }
 330         else if (imagedata->GetScalarType()==VTK_SIGNED_CHAR)
 331         {
 332                 signed char *pp = (signed char*)p;
 333                 result = (double)(*pp);
 334         }
 335         else if (imagedata->GetScalarType()==VTK_UNSIGNED_CHAR)
 336         {
 337                 unsigned char *pp = (unsigned char*)p;
 338                 result = (double)(*pp);
 339         }
 340         else if (imagedata->GetScalarType()==VTK_SHORT)
 341         {
 342                 short *pp = (short*)p;
 343                 result = (double)(*pp);
 344         }
 345         else if (imagedata->GetScalarType()==VTK_UNSIGNED_SHORT)
 346         {
 347                 unsigned short *pp = (unsigned short*)p;
 348                 result = (double)(*pp);
 349         }
 350         else if (imagedata->GetScalarType()==VTK_INT)
 351         {
 352                 int *pp = (int*)p;
 353                 result = (double)(*pp);
 354         }
 355         else if (imagedata->GetScalarType()==VTK_UNSIGNED_INT)
 356         {
 357                 unsigned int *pp = (unsigned int*)p;
 358                 result = (double)(*pp);
 359         }
 360         else if (imagedata->GetScalarType()==VTK_LONG)
 361         {
 362                 long *pp = (long*)p;
 363                 result = (double)(*pp);
 364         }
 365         else if (imagedata->GetScalarType()==VTK_UNSIGNED_LONG)
 366         {
 367                 unsigned long *pp = (unsigned long*)p;
 368                 result = (double)(*pp);
 369         }
 370         else if (imagedata->GetScalarType()==VTK_FLOAT)
 371         {
 372                 float *pp = (float*)p;
 373                 result = (double)(*pp);
 374         }
 375         else if (imagedata->GetScalarType()==VTK_DOUBLE)
 376         {
 377                 double *pp = (double*)p;
 378                 result = (double)(*pp);
 379         }
 380
 381         return result;
 382 }
 383
 384 //------------------------------------------------------------------------
 385
 386 void ContourExtractData::PutVtkImageDataResultValue( int x, int y, int z, double value )
 387 {
 388         unsigned short *pValue;
 389         unsigned short *pMask;
 390         pValue  = (unsigned short *)imagedataValueResult->GetScalarPointer(x,y,z);
 391         pMask   = (unsigned short *)imagedataMaskResult->GetScalarPointer(x,y,z);
 392         *pMask  = 255;
 393         *pValue = (unsigned short)value;
 394 }
 395
 396 //------------------------------------------------------------------------
 397 void ContourExtractData::ResetImageResult(int z)
 398 {
 399         if (okImagesResults==true)
 400         {
 401                 unsigned short *pValue;
 402                 unsigned short *pMask;
 403                 pValue  = (unsigned short *)imagedataValueResult->GetScalarPointer(0,0,z);
 404                 pMask   = (unsigned short *)imagedataMaskResult->GetScalarPointer(0,0,z);
 405
 406                 int ext[6];
 407                 imagedataValueResult->GetExtent(ext);
 408
 409                 int size = (ext[1]-ext[0]+1) * (ext[3]-ext[2]+1);
 410                 memset(pValue,0,size*2);
 411                 memset(pMask,0,size*2);
 412         } // if
 413 }
 414
 415
 416 //------------------------------------------------------------------------
 417 void ContourExtractData::CalculateImageResult()
 418 {
 419         if (okImagesResults==true)
 420         {
 421                 ResetImageResult(zImage);
 422
 423                 int minPoint[2];
 424                 int maxPoint[2];
 425                 int i,j;
 426                 double value;
 427
 428                 minPoint[0] = 999999;
 429                 minPoint[1] = 999999;
 430                 maxPoint[0] = -999999;
 431                 maxPoint[1] = -999999;
 432
 433                 GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
 434                 InitLstContoursLinesYPoints();
 435
 436                 for (j=minPoint[1]; j<=maxPoint[1]; j++)
 437                 {
 438                         for (i=minPoint[0]; i<=maxPoint[0]; i++)
 439                         {
 440
 441                                 //RaC 20-11-09 Changes specified in isInside (C1)
 442                                 int ext[6];
 443                                 imagedata->GetExtent(ext);
 444
 445                                 if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
 446                                 {
 447                   if (isInside(i,j,_typeOperation)==true)
 448                                         {
 449                                           value = GetDataValue(i,j,zImage);
 450                                           if ( (value>=scalarRange[0]) && (value<=scalarRange[1]) )
 451                                           {
 452                                                 PutVtkImageDataResultValue(i,j,zImage,  value );
 453                                           } // scalarRange
 454                                         } // if isInside
 455
 456                                 } // if ext
 457                         } // for i
 458                 } // for j
 459
 460
 461                 imagedataValueResult->Modified();
 462                 imagedataMaskResult->Modified();
 463                 imagedataValueResult->Update();
 464                 imagedataMaskResult->Update();
 465         } // if
 466
 467 }
 468
 469 //------------------------------------------------------------------------
 470 void ContourExtractData::GetValuesInsideCrown(  int *numberOfPixels,
 471                                                                                                 std::vector<double> *pLstValue,
 472                                                                                                 std::vector<double> *pLstValuePosX,
 473                                                                                                 std::vector<double> *pLstValuePosY,
 474                                                                                                 std::vector<double> *pLstValuePosZ)
 475 {
 476         pLstValue->clear();
 477         pLstValuePosX->clear();
 478         pLstValuePosY->clear();
 479         pLstValuePosZ->clear();
 480
 481         //      if (okImagesResults==true)
 482         //      {
 483         //              ResetImageResult(zImage);
 484         //      }
 485
 486         int minPoint[2];
 487         int maxPoint[2];
 488         int i,j;
 489         double value;
 490         int acum=0;
 491
 492         minPoint[0] = 999999;
 493         minPoint[1] = 999999;
 494         maxPoint[0] = -999999;
 495         maxPoint[1] = -999999;
 496
 497         GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
 498         InitLstContoursLinesYPoints();
 499
 500         for (j=minPoint[1]; j<=maxPoint[1]; j++)
 501         {
 502                 for (i=minPoint[0]; i<=maxPoint[0]; i++)
 503                 {
 504                         //RaC 20-11-09 Changes specified in isInside (C1)
 505                         int ext[6];
 506                         imagedata->GetExtent(ext);
 507
 508                         if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
 509                         {
 510                     if (isInside(i,j,_typeOperation)==true)
 511                                 {
 512
 513                                         acum++;
 514                                         value = GetDataValue(i,j,zImage);
 515                                         if ( (value>=scalarRange[0]) && (value<=scalarRange[1]) )
 516                                         {
 517                                                 pLstValue               -> push_back( value );
 518                                                 pLstValuePosX   -> push_back( i );
 519                                                 pLstValuePosY   -> push_back( j );
 520                                                 pLstValuePosZ   -> push_back( -1 );
 521                                         } // scalarRange
 522                                 } // if isInside
 523                         } // if ext
 524                 } // for
 525         } // for
 526
 527         *numberOfPixels = acum;
 528 }
 529
 530 //------------------------------------------------------------------------
 531
 532 vtkImageData *ContourExtractData::GetVtkImageValueResult()
 533 {
 534         return imagedataValueResult;
 535 }
 536 //------------------------------------------------------------------------
 537 vtkImageData *ContourExtractData::GetVtkImageMaskResult()
 538 {
 539         return imagedataMaskResult;
 540 }
 541 // ------------------------------------------------------------------------
 542 void ContourExtractData::InitVtkImagesResult()
 543 {
 544         int ext[6];
 545         int newDim[3];
 546         double spc[3];
 547         int scalartype;
 548
 549         imagedata->GetSpacing(spc);
 550         imagedata->GetExtent(ext);
 551         newDim[0]=ext[1]-ext[0]+1;
 552         newDim[1]=ext[3]-ext[2]+1;
 553         newDim[2]=ext[5]-ext[4]+1;
 554         scalartype = imagedata->GetScalarType();
 555
 556         if (imagedataValueResult!=NULL)
 557         {
 558                 imagedataValueResult->Delete();
 559         }
 560         imagedataValueResult = vtkImageData::New();
 561         //        imagedataValueResult->SetScalarType(scalartype);
 562         imagedataValueResult->SetScalarTypeToUnsignedShort();
 563         imagedataValueResult->SetSpacing(spc);
 564         imagedataValueResult->SetDimensions( newDim );
 565         imagedataValueResult->AllocateScalars();
 566
 567         if (imagedataMaskResult!=NULL)
 568         {
 569                 imagedataMaskResult->Delete();
 570         }
 571         imagedataMaskResult  = vtkImageData::New();
 572         //        imagedataMaskResult->SetScalarType(scalartype);
 573         imagedataMaskResult->SetScalarTypeToUnsignedShort();
 574         imagedataMaskResult->SetSpacing(spc);
 575         imagedataMaskResult->SetDimensions( newDim );
 576         imagedataMaskResult->AllocateScalars();
 577 }
 578
 579
 580 //------------------------------------------------------------------------
 581 void ContourExtractData::InitVolumeStatistics()
 582 {
 583         vol_rCountRange                         = 0;
 584         vol_rsize                                       = 0;
 585         vol_minValue                            = 9999999;
 586         vol_maxValue                            =-9999999;
 587         vol_acum_average                        = 0;
 588         vol_acum_standardeviation       = 0;
 589 }
 590
 591 //------------------------------------------------------------------------
 592 void ContourExtractData::SetVolumeStatistics(int rCountRange,
 593                                                                                          int rsize,
 594                                                                                          double minValue,
 595                                                                                          double maxValue,
 596                                                                                          double acum_average,
 597                                                                                          double acum_standardeviation)
 598 {
 599         vol_rCountRange                         = vol_rCountRange + rCountRange;
 600         vol_rsize                                       = vol_rsize + rsize;
 601
 602         if (minValue<vol_minValue){ vol_minValue = minValue;  }
 603         if (maxValue>vol_maxValue){ vol_maxValue = maxValue;  }
 604
 605         vol_acum_average                        = vol_acum_average + acum_average;
 606         vol_acum_standardeviation       = vol_acum_standardeviation + acum_standardeviation;
 607 }
 608
 609 //------------------------------------------------------------------------
 610 void ContourExtractData::GetVolumeStatistics(int *vol_rCountRange,
 611                                                                                          int *vol_rsize,
 612                                                                                          double *vol_minValue,
 613                                                                                          double *vol_maxValue,
 614                                                                                          double *vol_average,
 615                                                                                          double *vol_standardeviation)
 616 {
 617         *vol_rCountRange                = this->vol_rCountRange;
 618         *vol_rsize                              = this->vol_rsize;
 619         *vol_minValue                   = this->vol_minValue;
 620         *vol_maxValue                   = this->vol_maxValue;
 621         *vol_average                    = this->vol_acum_average / this->vol_rsize;
 622         *vol_standardeviation   = sqrt(this->vol_acum_standardeviation / this->vol_rsize);
 623 }
 624
 625
 626 //------------------------------------------------------------------------
 627 void ContourExtractData::Statistics( std::vector<double> *inputLstValue,
 628                                                                         int     grayRangeMin,
 629                                                                         int     grayRangeMax,
 630                                                                         int             *rCountRange,
 631                                                                         int             *rsize,
 632                                                                         double  *rmin,
 633                                                                         double  *rmax,
 634                                                                         double  *raverage,
 635                                                                         double  *rstandardeviation
 636                                                                         )
 637 {
 638         double min                                              = 0;
 639         double max                                              = 0;
 640         double average                                  = 0;
 641         double standardeviation                 = 0;
 642         double acum_average                             = 0;
 643         double acum_standardeviation            = 0;
 644         int      size                                           = 0;
 645         int      countRange                                     = 0;
 646         double ng;
 647
 648         if (inputLstValue!=NULL)
 649         {
 650                 size=inputLstValue->size();
 651                 if (size>0){
 652                         max=(*inputLstValue)[0];
 653                         min=(*inputLstValue)[0];
 654                         // Average , countRange
 655                         int i;
 656                         for ( i=0; i<size; i++ )
 657                         {
 658                                 ng=(*inputLstValue)[i];
 659                                 acum_average = acum_average + ng;
 660                                 if (max<ng) max=ng;             // Max
 661                                 if (min>ng) min=ng;     // Min
 662                                 if ((ng>=grayRangeMin) && (ng<=grayRangeMax)) countRange++;  // countRange
 663                         } // for average
 664                         average = acum_average / size;
 665
 666                         // Standar Deviation
 667                         acum_standardeviation=0;
 668                         double tmp;
 669                         for ( i=0; i<size; i++ )
 670                         {
 671                                 tmp = (*inputLstValue)[i] - average;
 672                                 acum_standardeviation = acum_standardeviation + tmp*tmp;
 673                         } // for standar deviation
 674                         standardeviation = sqrt(acum_standardeviation/size);
 675                         SetVolumeStatistics(countRange, (*rsize),
 676                                                                 min,max,
 677                                                             acum_average,acum_standardeviation);
 678                 } // if size
 679         } // if NULL
 680
 681         // OUTPUT
 682         *rsize                          = size;
 683         *rCountRange            = countRange;
 684         *rmin                           = min;
 685         *rmax                           = max;
 686         *raverage                       = average;
 687         *rstandardeviation      = standardeviation;
 688 }
 689
 690 //------------------------------------------------------------------------
 691 void ContourExtractData::SetTypeOperation(int type)
 692 {
 693         _typeOperation=type;
 694 }
 695
 696 //------------------------------------------------------------------------
 697 void ContourExtractData::Fill_lstlstlstVecXY(int iContour, int sizeY)
 698 {
 699         int i,y;
 700         double x1,y1,z1,x2,y2,z2;
 701         manualBaseModel *manualcontourmodel= lstManConMod[iContour];
 702         int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
 703         manualcontourmodel->UpdateSpline();
 704         //------------------------------------------------------------------------------------------------------
 705
 706         for (y=0;y<sizeY;y++)
 707         {
 708                 manualcontourmodel->GetSpline_i_Point(0,&x1,&y1,&z1);
 709                 x1=x1+0.5; y1=y1+0.5;
 710                 for (i=1; i<nps; i++)
 711                 {
 712                         manualcontourmodel->GetSpline_i_Point(i,&x2,&y2,&z2);
 713                         x2=x2+0.5; y2=y2+0.5;
 714                         if ( ((y1<y2)&&(y>=y1)&&(y<=y2)) || ((y1>y2)&&(y>=y2)&&(y<=y1)) || ((int)y1==y) || ((int)y2==y)  )
 715                         {
 716                                 _lstlstlstVecX1[iContour][y].push_back(x1);
 717                                 _lstlstlstVecY1[iContour][y].push_back(y1);
 718                                 _lstlstlstVecX2[iContour][y].push_back(x2);
 719                                 _lstlstlstVecY2[iContour][y].push_back(y2);
 720                         }
 721                         x1=x2; y1=y2; z1=z2;
 722                 } // for i  Points in spline
 723         } // y
 724
 725 }
 726
 727 void ContourExtractData::InitLstContoursLinesYPoints()
 728 {
 729         // init InInside Optimisation
 730         int i;
 731
 732         _lstlstlstVecX1.clear();
 733         _lstlstlstVecY1.clear();
 734         _lstlstlstVecX2.clear();
 735         _lstlstlstVecY2.clear();
 736
 737         /* RaC 20-11-09
 738         int ext[6];
 739         this->imagedata->GetWholeExtent(ext);
 740         int sizeY = ext[3]-ext[2]+1;
 741         */
 742         std::vector<double> vecDouble;
 743         std::vector< std::vector<double> > vecVecDouble;
 744         for ( i=0 ; i<_sizeImageY ; i++ )
 745         {
 746                 vecVecDouble.push_back( vecDouble );
 747         }
 748
 749         //Fill structure with points
 750         int sizeContours = lstManConMod.size();
 751         for( i=0 ; i<sizeContours ; i++ )
 752         {
 753                 _lstlstlstVecX1.push_back( vecVecDouble );
 754                 _lstlstlstVecY1.push_back( vecVecDouble );
 755                 _lstlstlstVecX2.push_back( vecVecDouble );
 756                 _lstlstlstVecY2.push_back( vecVecDouble );
 757                 Fill_lstlstlstVecXY(i,_sizeImageY);
 758         }
 759
 760 }
 761
 762 void ContourExtractData::SetScalarRange(double min, double max)
 763 {
 764         scalarRange[0]=min;
 765         scalarRange[1]=max;
 766 }
 767
 768 void ContourExtractData::SetSizeImageY(int pSizeImageY)
 769 {
 770         _sizeImageY=pSizeImageY;
 771 }