//----------------------------------------------------------------------
ContourExtractData::ContourExtractData( bool okImagesResults)
- {
- this->imagedata = NULL;
+{
+ this->imagedata = NULL;
imagedataValueResult = NULL;
imagedataMaskResult = NULL;
this->okImagesResults = okImagesResults;
_typeOperation = 0;
- }
+}
- // ------------------------------------------------------------------------
+// ------------------------------------------------------------------------
- ContourExtractData::~ContourExtractData()
- {
- }
+ContourExtractData::~ContourExtractData()
+{
+}
//----------------------------------------------------------------------
void ContourExtractData::SetImage( vtkImageData* imagedata)
- {
+{
this->imagedata = imagedata;
-
+
+ // RaC 20-11-09 Changes in InitLstContoursLinesYPoints
+ int ext[6];
+ this->imagedata->GetWholeExtent(ext);
+ _sizeImageY = ext[3]-ext[2]+1;
+
// init vtk image result : valuesImage maskImage
if (this->okImagesResults==true){ InitVtkImagesResult(); }
- }
+}
//----------------------------------------------------------------------
void ContourExtractData::SetZtoBeAnalys( int z )
- {
+{
this->zImage = z;
- }
+}
//------------------------------------------------------------------------
- void ContourExtractData::SetLstManualContourModel( std::vector<manualBaseModel*> lstManConMod)
- {
- this->lstManConMod = lstManConMod;
- }
+void ContourExtractData::SetLstManualContourModel( std::vector<manualBaseModel*> lstManConMod)
+{
+ this->lstManConMod = lstManConMod;
+}
//------------------------------------------------------------------------
void ContourExtractData::GetMinMaxPoint(int *minPoint,
- int *maxPoint,
- manualBaseModel *manualcontourmodel
- )
+ int *maxPoint,
+ manualBaseModel *manualcontourmodel
+ )
{
int i;
//int np = manualcontourmodel->GetSizeLstPoints( ); // number of control points // JPRx
-
-// JSTG 26-02-08 ---------------------------------------------------------------------------------------
+
+ // JSTG 26-02-08 ---------------------------------------------------------------------------------------
//int nps = manualviewbaseecontour->GetNumberOfPointsSpline(); // number of points in the spline
int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
-//------------------------------------------------------------------------------------------------------
-
-// JSTG 26-02-08 ---------------------------------------------------------------------------------------
+ //------------------------------------------------------------------------------------------------------
+
+ // JSTG 26-02-08 ---------------------------------------------------------------------------------------
//double x,y,z,t;
double x,y,z;
//double delta=( double ) ( np ) / ( double ) ( nps );
minPoint[1]--;
maxPoint[0]++;
maxPoint[1]++;
-//------------------------------------------------------------------------------------------------------
+ //------------------------------------------------------------------------------------------------------
}
//------------------------------------------------------------------------
void ContourExtractData::GetMinMaxPoint_Of_LstManConMod( int *minPoint,
- int *maxPoint
- )
+ int *maxPoint
+ )
{
int i,size = lstManConMod.size();
int result = 0;
int i;
+ //cout<<"RaC ContourExtractData::AnalisisContourInsideV2-iContour:"<<iContour<<" y:"<<y<<endl;
+
int nps=_lstlstlstVecX1[iContour][y].size();
-
+
double x1,y1,x2,y2;
double borderX, borderY;
double xx1, yy1,xx2, yy2;
borderX=x1;
borderY=y1;
-
+
if (y1<y2)
{
xx1=x1; yy1=y1; xx2=x2; yy2=y2;
} else {
xx1=x2; yy1=y2; xx2=x1; yy2=y1;
}
-
+
double difxx2xx1=fabs(xx2-xx1);
if (difxx2xx1==0) difxx2xx1=0.0000000001;
-
+
// Finding border looking in vertical direction AND verifing if pixel is at right of the line
if ( (yy>=yy1)&&(yy<=yy2) )
{
d = ( fabs(xx2-xx1)*(yy-yy1) ) / (yy2-yy1) ;
if ( (xx1<=xx2)&&(x<(xx1+d)) ) { result++; }
if ( (xx1>xx2)&&(x<(xx1-d)) ) { result++; }
-
+
if ( (yy2-yy1)/difxx2xx1 >= 1.0)
{
if (xx1<=xx2)
}
}
} // if point inside y
-
-
+
+
// Finding border looking in vertical direction
if ( ((xx1<=xx2)&&(xx>=xx1)&&(xx<xx2)) || ((xx1>xx2)&&(xx>=xx2)&&(xx<xx1)) )
{
}
}
} // if point inside x
-
-
+
+
//Border verification
if ( (x==(int)borderX) && (y==(int)borderY) ) { inBorder=true; }// if point in border
-
+
// Verification : border in horizontal line
if ( ((int)y1==(int)y2) && ((int)y1==y) && (x1<x2) && (x>=x1) && (x<=x2)) { inBorder=true; }
if ( ((int)y1==(int)y2) && ((int)y1==y) && (x2<x1) && (x>=x2) && (x<=x1)) { inBorder=true; }
-
+
if (inBorder==true){ i=nps; }
} // for i
-
+
if (inBorder==true) { result=1; }
-
+
return result;
}
//------------------------------------------------------------------------
+// typeOperation=0 AND
+// typeOperation=1 OR
+// typeOperation=2 XOR
bool ContourExtractData::isInside(int x, int y, int typeOperation)
{
bool result = false;
int i,size = this->lstManConMod.size();
int numberInside = 0;
+ /* RaC 20-11-09 (C1) Changes to use the method without the image.
int ext[6];
imagedata->GetExtent(ext);
if ((x>=0) && (x<=ext[1]) && (y>=0) && (y<=ext[3]))
{
+ */
- if (typeOperation==0) // AND Intersection
+ if (typeOperation==0) // AND Intersection
+ {
+ for (i=0;i<size;i++)
{
- for (i=0;i<size;i++)
+ // To process the statistics of the Points contour the procedure is different
+ // RaC 19-09-09
+ manualBaseModel *mbm = lstManConMod[i];
+ if(mbm->GetTypeModel()==7)
{
- // To process the statistics of the Points contour the procedure is different
- // RaC 19-09-09
- manualBaseModel *mbm = lstManConMod[i];
- if(mbm->GetTypeModel()==7)
- {
- if(mbm->IsPoint(x,y)==true)
- {
- numberLeft=1;
- }
- }//if
- else
+ if(mbm->IsPoint(x,y)==true)
{
- numberLeft = AnalisisContourInsideV2(x,y, i );
- }//else
+ numberLeft=1;
+ }
+ }//if
+ else
+ {
+ numberLeft = AnalisisContourInsideV2(x,y, i );
+ }//else
- if ( (numberLeft % 2) ==1){ numberInside++; }
- }
- if ( numberInside == (size) ){ result=true; }
- } // AND Intersection
+ if ( (numberLeft % 2) ==1){ numberInside++; }
+ }
+ if ( numberInside == (size) ){ result=true; }
+ } // AND Intersection
- numberLeft=0;
+ numberLeft=0;
- if (typeOperation==1) // OR All
+ if (typeOperation==1) // OR All
+ {
+ for (i=0;i<size;i++)
{
- for (i=0;i<size;i++)
+ // To process the statistics of the Points contour the procedure is different
+ // RaC 19-09-09
+ manualBaseModel *mbm = lstManConMod[i];
+ if(mbm->GetTypeModel()==7)
{
- // To process the statistics of the Points contour the procedure is different
- // RaC 19-09-09
- manualBaseModel *mbm = lstManConMod[i];
- if(mbm->GetTypeModel()==7)
- {
- if(mbm->IsPoint(x,y)==true)
- {
- numberLeft=1;
- }
- }//if
- else
+ if(mbm->IsPoint(x,y)==true)
{
- numberLeft = AnalisisContourInsideV2(x,y, i );
- }//else
- if ( (numberLeft % 2) ==1){ result=true; }
- }
- } // OR All
+ numberLeft=1;
+ }
+ }//if
+ else
+ {
+ numberLeft = AnalisisContourInsideV2(x,y, i );
+ }//else
+ if ( (numberLeft % 2) ==1){ result=true; }
+ }
+ } // OR All
- numberLeft=0;
+ numberLeft=0;
- if (typeOperation==2) // XOR crown
+ if (typeOperation==2) // XOR crown
+ {
+ for (i=0;i<size;i++)
{
- for (i=0;i<size;i++)
+ // To process the statistics of the Points contour the procedure is different
+ // RaC 19-09-09
+ manualBaseModel *mbm = lstManConMod[i];
+ if(mbm->GetTypeModel()==7)
{
- // To process the statistics of the Points contour the procedure is different
- // RaC 19-09-09
- manualBaseModel *mbm = lstManConMod[i];
- if(mbm->GetTypeModel()==7)
+ if(mbm->IsPoint(x,y)==true)
{
- if(mbm->IsPoint(x,y)==true)
- {
- numberLeft=1;
- }
- }//if
- else
- {
- numberLeft = numberLeft + AnalisisContourInsideV2(x,y, i );
- }//else
-
- }
- if ( numberLeft % 2 ==1){ result = true; }
- }// XOR crown
+ numberLeft=1;
+ }
+ }//if
+ else
+ {
+ numberLeft = numberLeft + AnalisisContourInsideV2(x,y, i );
+ }//else
+ }
+ if ( numberLeft % 2 ==1){ result = true; }
+ }// XOR crown
- }
+
+ //RaC }
return result;
}
double ContourExtractData::GetDataValue(int x, int y, int z)
{
-// wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)wxvtkbaseview;
-// int z = (int)wxvtk2dbaseview->GetVtkBaseData()->GetZ();
+ // wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)wxvtkbaseview;
+ // int z = (int)wxvtk2dbaseview->GetVtkBaseData()->GetZ();
//JSTG 13-03-08-----
-//EED OJO avec JS _zz = z;
+ //EED OJO avec JS _zz = z;
//------------------
double result;
void *p;
unsigned short *pMask;
pValue = (unsigned short *)imagedataValueResult->GetScalarPointer(0,0,z);
pMask = (unsigned short *)imagedataMaskResult->GetScalarPointer(0,0,z);
-
+
int ext[6];
imagedataValueResult->GetExtent(ext);
GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
InitLstContoursLinesYPoints();
-
+
for (j=minPoint[1]; j<=maxPoint[1]; j++)
{
for (i=minPoint[0]; i<=maxPoint[0]; i++)
{
- if (isInside(i,j,_typeOperation)==true)
+
+ //RaC 20-11-09 Changes specified in isInside (C1)
+ int ext[6];
+ imagedata->GetExtent(ext);
+
+ if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
{
- value = GetDataValue(i,j,zImage);
- PutVtkImageDataResultValue(i,j,zImage, value );
- } // if
+ if (isInside(i,j,_typeOperation)==true)
+ {
+ value = GetDataValue(i,j,zImage);
+ PutVtkImageDataResultValue(i,j,zImage, value );
+ } // if
+
+ }//if
+
} // for i
} // for j
//------------------------------------------------------------------------
void ContourExtractData::GetValuesInsideCrown(std::vector<double> *pLstValue,
- std::vector<double> *pLstValuePosX,
- std::vector<double> *pLstValuePosY,
- std::vector<double> *pLstValuePosZ)
+ std::vector<double> *pLstValuePosX,
+ std::vector<double> *pLstValuePosY,
+ std::vector<double> *pLstValuePosZ)
{
pLstValue->clear();
pLstValuePosX->clear();
pLstValuePosY->clear();
pLstValuePosZ->clear();
-// if (okImagesResults==true)
-// {
-// ResetImageResult(zImage);
-// }
+ // if (okImagesResults==true)
+ // {
+ // ResetImageResult(zImage);
+ // }
int minPoint[2];
int maxPoint[2];
maxPoint[1] = -999999;
GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
- InitLstContoursLinesYPoints();
+ InitLstContoursLinesYPoints();
for (j=minPoint[1]; j<=maxPoint[1]; j++)
{
for (i=minPoint[0]; i<=maxPoint[0]; i++)
{
- if (isInside(i,j,_typeOperation)==true)
+ //RaC 20-11-09 Changes specified in isInside (C1)
+ int ext[6];
+ imagedata->GetExtent(ext);
+
+ if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
{
- value = GetDataValue(i,j,zImage);
-
-// Borrame
-// if (okImagesResults==true){
-// PutVtkImageDataResultValue(i,j,zImage, value );
-// }
-
- pLstValue -> push_back( value );
- pLstValuePosX -> push_back( i );
- pLstValuePosY -> push_back( j );
- pLstValuePosZ -> push_back( -1 );
- } // if
+
+ if (isInside(i,j,_typeOperation)==true)
+ {
+ value = GetDataValue(i,j,zImage);
+
+ // Borrame
+ // if (okImagesResults==true){
+ // PutVtkImageDataResultValue(i,j,zImage, value );
+ // }
+
+ pLstValue -> push_back( value );
+ pLstValuePosX -> push_back( i );
+ pLstValuePosY -> push_back( j );
+ pLstValuePosZ -> push_back( -1 );
+ } // if
+
+ } //if
+
} // for
} // for
-// Borrame
-// if (this->okImagesResults==true){
-// imagedataValueResult->Modified();
-// imagedataMaskResult->Modified();
-// }
+ // Borrame
+ // if (this->okImagesResults==true){
+ // imagedataValueResult->Modified();
+ // imagedataMaskResult->Modified();
+ // }
}
// ------------------------------------------------------------------------
void ContourExtractData::InitVtkImagesResult()
{
- int ext[6];
- int newDim[3];
- double spc[3];
- int scalartype;
-
- imagedata->GetSpacing(spc);
- imagedata->GetExtent(ext);
- newDim[0]=ext[1]-ext[0]+1;
- newDim[1]=ext[3]-ext[2]+1;
- newDim[2]=ext[5]-ext[4]+1;
- scalartype = imagedata->GetScalarType();
-
- if (imagedataValueResult!=NULL)
- {
- imagedataValueResult->Delete();
- }
- imagedataValueResult = vtkImageData::New();
-// imagedataValueResult->SetScalarType(scalartype);
- imagedataValueResult->SetScalarTypeToUnsignedShort();
- imagedataValueResult->SetSpacing(spc);
- imagedataValueResult->SetDimensions( newDim );
- imagedataValueResult->AllocateScalars();
-
- if (imagedataMaskResult!=NULL)
- {
- imagedataMaskResult->Delete();
- }
- imagedataMaskResult = vtkImageData::New();
-// imagedataMaskResult->SetScalarType(scalartype);
- imagedataMaskResult->SetScalarTypeToUnsignedShort();
- imagedataMaskResult->SetSpacing(spc);
- imagedataMaskResult->SetDimensions( newDim );
- imagedataMaskResult->AllocateScalars();
+ int ext[6];
+ int newDim[3];
+ double spc[3];
+ int scalartype;
+
+ imagedata->GetSpacing(spc);
+ imagedata->GetExtent(ext);
+ newDim[0]=ext[1]-ext[0]+1;
+ newDim[1]=ext[3]-ext[2]+1;
+ newDim[2]=ext[5]-ext[4]+1;
+ scalartype = imagedata->GetScalarType();
+
+ if (imagedataValueResult!=NULL)
+ {
+ imagedataValueResult->Delete();
+ }
+ imagedataValueResult = vtkImageData::New();
+ // imagedataValueResult->SetScalarType(scalartype);
+ imagedataValueResult->SetScalarTypeToUnsignedShort();
+ imagedataValueResult->SetSpacing(spc);
+ imagedataValueResult->SetDimensions( newDim );
+ imagedataValueResult->AllocateScalars();
+
+ if (imagedataMaskResult!=NULL)
+ {
+ imagedataMaskResult->Delete();
+ }
+ imagedataMaskResult = vtkImageData::New();
+ // imagedataMaskResult->SetScalarType(scalartype);
+ imagedataMaskResult->SetScalarTypeToUnsignedShort();
+ imagedataMaskResult->SetSpacing(spc);
+ imagedataMaskResult->SetDimensions( newDim );
+ imagedataMaskResult->AllocateScalars();
}
//------------------------------------------------------------------------
void ContourExtractData::SetVolumeStatistics(int rCountRange,
- int rsize,
- double minValue,
- double maxValue,
- double acum_average,
- double acum_standardeviation)
+ int rsize,
+ double minValue,
+ double maxValue,
+ double acum_average,
+ double acum_standardeviation)
{
vol_rCountRange = vol_rCountRange + rCountRange;
vol_rsize = vol_rsize + rsize;
-
+
if (minValue<vol_minValue){ vol_minValue = minValue; }
if (maxValue>vol_maxValue){ vol_maxValue = maxValue; }
-
+
vol_acum_average = vol_acum_average + acum_average;
vol_acum_standardeviation = vol_acum_standardeviation + acum_standardeviation;
}
double *rmax,
double *raverage,
double *rstandardeviation
- )
+ )
{
- double min = 0;
- double max = 0;
- double average = 0;
- double standardeviation = 0;
- double acum_average = 0;
- double acum_standardeviation = 0;
- int size = 0;
- int countRange = 0;
- double ng;
-
- if (inputLstValue!=NULL)
- {
+ double min = 0;
+ double max = 0;
+ double average = 0;
+ double standardeviation = 0;
+ double acum_average = 0;
+ double acum_standardeviation = 0;
+ int size = 0;
+ int countRange = 0;
+ double ng;
+
+ if (inputLstValue!=NULL)
+ {
size=inputLstValue->size();
if (size>0){
- max=(*inputLstValue)[0];
- min=(*inputLstValue)[0];
- // Average , countRange
+ max=(*inputLstValue)[0];
+ min=(*inputLstValue)[0];
+ // Average , countRange
int i;
for ( i=0; i<size; i++ )
{
} // for average
average = acum_average / size;
- // Standar Deviation
+ // Standar Deviation
acum_standardeviation=0;
double tmp;
- for ( i=0; i<size; i++ )
+ for ( i=0; i<size; i++ )
{
- tmp = (*inputLstValue)[i] - average;
+ tmp = (*inputLstValue)[i] - average;
acum_standardeviation = acum_standardeviation + tmp*tmp;
} // for standar deviation
standardeviation = sqrt(acum_standardeviation/size);
SetVolumeStatistics(countRange, size,
- min,max,
- acum_average,acum_standardeviation);
+ min,max,
+ acum_average,acum_standardeviation);
} // if size
- } // if NULL
-
- // OUTPUT
- *rsize = size;
- *rCountRange = countRange;
- *rmin = min;
- *rmax = max;
- *raverage = average;
- *rstandardeviation = standardeviation;
+ } // if NULL
+
+ // OUTPUT
+ *rsize = size;
+ *rCountRange = countRange;
+ *rmin = min;
+ *rmax = max;
+ *raverage = average;
+ *rstandardeviation = standardeviation;
}
//------------------------------------------------------------------------
int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
manualcontourmodel->UpdateSpline();
//------------------------------------------------------------------------------------------------------
-
+
for (y=0;y<sizeY;y++)
{
manualcontourmodel->GetSpline_i_Point(0,&x1,&y1,&z1);
{
// init InInside Optimisation
int i;
-
+
_lstlstlstVecX1.clear();
_lstlstlstVecY1.clear();
_lstlstlstVecX2.clear();
_lstlstlstVecY2.clear();
-
+
+ /* RaC 20-11-09
int ext[6];
this->imagedata->GetWholeExtent(ext);
int sizeY = ext[3]-ext[2]+1;
+ */
std::vector<double> vecDouble;
std::vector< std::vector<double> > vecVecDouble;
- for ( i=0 ; i<sizeY ; i++ )
+ for ( i=0 ; i<_sizeImageY ; i++ )
{
vecVecDouble.push_back( vecDouble );
}
-
+
//Fill structure with points
int sizeContours = lstManConMod.size();
for( i=0 ; i<sizeContours ; i++ )
_lstlstlstVecY1.push_back( vecVecDouble );
_lstlstlstVecX2.push_back( vecVecDouble );
_lstlstlstVecY2.push_back( vecVecDouble );
- Fill_lstlstlstVecXY(i,sizeY);
+ Fill_lstlstlstVecXY(i,_sizeImageY);
}
-
-}
+}
+void ContourExtractData::SetSizeImageY(int pSizeImageY)
+{
+ _sizeImageY=pSizeImageY;
+}
git://git.creatis.insa-lyon.fr / creaMaracasVisu.git / commitdiff