Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestEmpty.cxx
  12   TestUtil.cxx
  13   TestBug.cxx
  14   TestHash.cxx
  15   TestCommand.cxx
  16   TestTS.cxx
  17   TestVR.cxx
  18   TestDictGroupName.cxx
  19   TestDict.cxx
  20   TestDataEntry.cxx
  21   TestWriteSimple.cxx
  22   TestImageSet.cxx
  23   TestDicomDirElement.cxx
  24   TestDicomString.cxx
  25   TestEnumVR.cxx
  26   TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
  27 )
  28 IF(UNIX OR WIN32)
  29   SET(TEST_SOURCES ${TEST_SOURCES}
  30     TestInline.cxx
  31   )
  32 ENDIF(UNIX OR WIN32)
  33
  34 # add tests that require data
  35 IF (GDCM_DATA_ROOT)
  36   SET(TEST_SOURCES ${TEST_SOURCES}
  37     TestFileAccessors.cxx
  38     TestMakeIcon.cxx
  39     TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h
  40     #TestLoadAllDocumentsNoShadow.cxx   # includes generated gdcmDataImages.h
  41     TestPrintAllDocument.cxx            # includes generated gdcmDataImages.h
  42     #TestAllEntryVerify.cxx             # includes generated gdcmDataImages.h
  43     #TestAllReadCompareDicom.cxx        # includes generated gdcmDataImages.h
  44     TestReadWriteReadCompare.cxx        # includes generated gdcmDataImages.h
  45     TestReadWriteJPEGReadCompare.cxx    # includes generated gdcmDataImages.h
  46     #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h
  47
  48     #TestCopyDicom.cxx                  # includes generated gdcmDataImages.h
  49     #    TestCopyRescaleDicom.cxx       # includes generated gdcmDataImages.h
  50     #TestChangeHeader.cxx
  51     #    TestAnonymize.cxx
  52     TestDirList.cxx
  53     TestDicomDir.cxx                 # require DICOMDIR
  54
  55     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
  56     TestSerieHelper.cxx              # uses gdcmData as a default root directory
  57     TestAllVM.cxx
  58     TestValidate.cxx                 #Just to have on overviews of oddities ...
  59   )
  60   # add test that require VTK:
  61   IF(GDCM_VTK)
  62
  63     IF("${VTK_MAJOR_VERSION}" LESS 4)
  64       MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
  65     ELSE("${VTK_MAJOR_VERSION}" LESS 4)
  66
  67       IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
  68         MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
  69                              "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
  70       ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
  71       IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
  72         MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
  73                              "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
  74       ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
  75
  76       # Include the VTK library since we know this is going to work
  77       INCLUDE(${VTK_USE_FILE})
  78
  79       INCLUDE_DIRECTORIES(
  80         ${GDCM_SOURCE_DIR}/vtk
  81       )
  82       SET(TEST_SOURCES ${TEST_SOURCES}
  83         VTKTestRead.cxx
  84         VTKTestReadSeq.cxx
  85         VTKTestWrite.cxx
  86         VTKTestWriteSeq.cxx
  87       )
  88     ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
  89   ENDIF(GDCM_VTK)
  90 ENDIF (GDCM_DATA_ROOT)
  91
  92
  93
  94 # include stuff
  95 INCLUDE_DIRECTORIES(
  96   ${GDCM_SOURCE_DIR}/src
  97   ${GDCM_BINARY_DIR}
  98 )
  99
 100 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
 101 ADD_EXECUTABLE(gdcmTests ${Tests})
 102 IF(GDCM_VTK)
 103   IF(GDCM_DATA_ROOT)
 104     TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
 105   ELSE(GDCM_DATA_ROOT)
 106     TARGET_LINK_LIBRARIES(gdcmTests gdcm)
 107   ENDIF(GDCM_DATA_ROOT)
 108 ELSE(GDCM_VTK)
 109   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
 110 ENDIF(GDCM_VTK)
 111
 112 SET (TestsToRun ${Tests})
 113 REMOVE (TestsToRun gdcmTests.cxx)
 114
 115 # Loop over files and create executables
 116 FOREACH(file ${TEST_SOURCES})
 117   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
 118   ADD_TEST(${name} ${GDCM_TESTS} ${name})
 119 ENDFOREACH(file ${TEST_SOURCES})
 120
 121 #-----------------------------------------------------------------------------
 122
 123 # We need to test the reading of all dicom images in the gdcmData directory
 124 # First parse this directory and extract all images
 125
 126 FILE(GLOB GDCM_DATA_IMAGES_GLOB
 127   "${GDCM_DATA_ROOT}/*.acr"
 128   "${GDCM_DATA_ROOT}/*.dcm"
 129   "${GDCM_DATA_ROOT}/*.nema"
 130   "${GDCM_DATA_ROOT}/*.ima"
 131   )
 132
 133 FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB
 134   "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm"
 135   )
 136 #MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB})
 137
 138 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 139 SET(BLACK_LIST
 140   # Multiframe Papyrus format image
 141   # Just to remember this format exists, and is gdcm::File compliant
 142   # (NOT gdcm::FileHelper ...)
 143   # any contribution is welcome
 144   "PET-cardio-Multiframe-Papyrus.dcm"
 145   # From David Clunie's Compresion Dataset
 146   "D_CLUNIE_CT1_JLSN.dcm"
 147   "D_CLUNIE_CT1_JLSL.dcm"
 148   #Not a Dicom Image, but a RT Object
 149   "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
 150   #Dicom MPEG image
 151   "ETIAM_video_002.dcm"
 152   #Something stupid occured in the code for LibIDO images.
 153   #I Black list them for a while. JP
 154   #"gdcm-ACR-LibIDO.acr"
 155   "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
 156   #16 Bits per pixel images with LUT 16 Bits.
 157   #I wait to be 100% sure before releasing them. JP
 158   "rle16sti.dcm"
 159   "rle16loo.dcm"
 160   # Jasper cannot handle this image, only kakadu so far, unless you patch jasper
 161   # but then it breaks other images...
 162   "CT_Phillips_JPEG2K_Decompr_Problem.dcm"
 163
 164   #RTDOSE, 32 bits image : cannot be compressed
 165   #"RTDOSE.dcm"
 166
 167   #
 168   # ------------
 169   #
 170   #Still cause troubles (see the .README.txt file for more details)
 171   "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
 172   "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm"
 173   #The 2 previous images are identical !
 174   #--> Replaced by more significant name
 175   "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
 176
 177   #hexedit shows something *very* strange around offset 0x76e !
 178   #the images looks *over*corrupted (on disc, not from the manufacturer!)
 179   "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm"
 180
 181   # Seems this one hangs on 64 bits processors ?!?
 182   # I blacklist it until the pb is solved.
 183   # (to get some more green on the Dasboards)
 184   "MR_Philips-Intera_BreaksNOSHADOW.dcm"
 185
 186   # No way we'll ever be able to read that...
 187   "ELSCINT1_LOSSLESS_RICE.dcm"
 188
 189   # Are we even be able to support our own bugs ?
 190   "SIEMENS_MAGNETOM-12-MONO2-GDCM12-VRUN.dcm"
 191   "SIEMENS_GBS_III-16-ACR_NEMA_1-ULis2Bytes.dcm"
 192   "SIEMENS_ImageLocationUN.dcm"
 193   "TheralysGDCM120Bug.dcm"
 194   "IM-0001-0066.dcm"
 195   "DMCPACS_ExplicitImplicit_BogusIOP.dcm"
 196   "MR_ELSCINT1_00e1_1042_SQ_feff_00e0_Item.dcm"
 197   "MR_Spectroscopy_SIEMENS_OF.dcm"
 198   )
 199
 200 # Create a specific list of dicom files that we know are part of a sequence
 201 SET(SEQ_LIST
 202   "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm"
 203   )
 204
 205 # Add a special test that requires dciodvfy from dicom3tools
 206 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
 207
 208 # This is a GLOB expression, change it into a list separated with a comma and \n
 209 SET(GDCM_DATA_IMAGES)
 210 SET(GDCM_DATA_SEQ_IMAGES)
 211 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 212   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 213   IF(DCIODVFY_FOUND)
 214     #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 215     #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
 216   ENDIF(DCIODVFY_FOUND)
 217   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 218   IF(NOT bad_dicom)
 219     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 220     # SEQ_LIST is a regular expression:
 221     STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp})
 222     IF(is_seq)
 223       SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",")
 224     ENDIF(is_seq)
 225   ENDIF(NOT bad_dicom)
 226 ENDFOREACH(filename)
 227
 228 # Paranoid / dcmdump
 229 IF(GDCM_DCMTK_CHECK)
 230 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB})
 231   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 232   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 233   IF(NOT bad_dicom)
 234     IF(BUILD_EXAMPLES)
 235       FOREACH(mode a d x) #r
 236         FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb)
 237           ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt})
 238           ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp})
 239           #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt})
 240           #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm)
 241         ENDFOREACH(opt)
 242       ENDFOREACH(mode)
 243     ENDIF(BUILD_EXAMPLES)
 244   ENDIF(NOT bad_dicom)
 245 ENDFOREACH(filename)
 246 ENDIF(GDCM_DCMTK_CHECK)
 247
 248 # Populate GDCM_DATA_IMAGES:
 249 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 250   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 251 )
 252
 253 # Populate GDCM_DATA_SEQ_IMAGES:
 254 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 255   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 256 )
 257
 258 #-----------------------------------------------------------------------------
 259 # Trying to solve a bizarre problem when loading shared lib if gdcm is static
 260 # Therefore I disable the test when building SHAREDLIBS
 261 IF(UNIX AND NOT BUILD_SHARED_LIBS)
 262   ADD_LIBRARY(dynmodule MODULE dynmodule.cxx)
 263   TARGET_LINK_LIBRARIES(dynmodule gdcm)
 264   ADD_EXECUTABLE(loadmodule loadmodule.cxx )
 265   TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl)
 266   ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule)
 267 ENDIF(UNIX AND NOT BUILD_SHARED_LIBS)
 268
 269
 270 #-----------------------------------------------------------------------------
 271 # Do the build against an installed gdcm
 272 SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}")
 273 SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root")
 274 STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}"
 275   GDCM_TEST_INSTALL)
 276 IF(GDCM_TEST_INSTALL)
 277   ADD_TEST(Install
 278     ${CMAKE_CTEST_COMMAND}
 279     #  ${GDCM_INSTALL_TEST_CONFIG_TYPE}
 280     --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR}
 281     --build-generator ${CMAKE_GENERATOR}
 282     --build-project GDCM
 283     --build-makeprogram ${CMAKE_MAKE_PROGRAM}
 284     --build-noclean
 285     --build-target install)
 286 ENDIF(GDCM_TEST_INSTALL)
 287