Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestEmpty.cxx
  12   TestUtil.cxx
  13   TestBug.cxx
  14   TestHash.cxx
  15   TestCommand.cxx
  16   TestTS.cxx
  17   TestVR.cxx
  18   TestDictGroupName.cxx
  19   TestDict.cxx
  20   TestDataEntry.cxx
  21   TestWriteSimple.cxx
  22   TestImageSet.cxx
  23   TestDicomDirElement.cxx
  24   TestDicomString.cxx
  25   TestEnumVR.cxx
  26   TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
  27 )
  28 IF(UNIX OR WIN32)
  29   SET(TEST_SOURCES ${TEST_SOURCES}
  30     TestInline.cxx
  31   )
  32 ENDIF(UNIX OR WIN32)
  33
  34 # add tests that require data
  35 IF (GDCM_DATA_ROOT)
  36   SET(TEST_SOURCES ${TEST_SOURCES}
  37     TestFileAccessors.cxx
  38     TestMakeIcon.cxx
  39     TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h
  40     #TestLoadAllDocumentsNoShadow.cxx   # includes generated gdcmDataImages.h
  41     TestPrintAllDocument.cxx            # includes generated gdcmDataImages.h
  42     #TestAllEntryVerify.cxx             # includes generated gdcmDataImages.h
  43     #TestAllReadCompareDicom.cxx        # includes generated gdcmDataImages.h
  44     TestReadWriteReadCompare.cxx        # includes generated gdcmDataImages.h
  45     TestReadWriteJPEGReadCompare.cxx    # includes generated gdcmDataImages.h
  46     #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h
  47
  48     #TestCopyDicom.cxx                  # includes generated gdcmDataImages.h
  49     #    TestCopyRescaleDicom.cxx       # includes generated gdcmDataImages.h
  50     #TestChangeHeader.cxx
  51     #    TestAnonymize.cxx
  52     TestDirList.cxx
  53     TestDicomDir.cxx                 # require DICOMDIR
  54
  55     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
  56     TestSerieHelper.cxx              # uses gdcmData as a default root directory
  57     TestAllVM.cxx
  58     TestValidate.cxx                 #Just to have on overviews of oddities ...
  59   )
  60   # add test that require VTK:
  61   IF(GDCM_VTK)
  62
  63     IF("${VTK_MAJOR_VERSION}" LESS 4)
  64       MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
  65     ELSE("${VTK_MAJOR_VERSION}" LESS 4)
  66
  67       IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
  68         MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
  69                              "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
  70       ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
  71       IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
  72         MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
  73                              "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
  74       ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
  75
  76       # Include the VTK library since we know this is going to work
  77       INCLUDE(${VTK_USE_FILE})
  78
  79       INCLUDE_DIRECTORIES(
  80         ${GDCM_SOURCE_DIR}/vtk
  81       )
  82       SET(TEST_SOURCES ${TEST_SOURCES}
  83         VTKTestRead.cxx
  84         VTKTestReadSeq.cxx
  85         VTKTestWrite.cxx
  86         VTKTestWriteSeq.cxx
  87       )
  88     ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
  89   ENDIF(GDCM_VTK)
  90 ENDIF (GDCM_DATA_ROOT)
  91
  92
  93
  94 # include stuff
  95 INCLUDE_DIRECTORIES(
  96   ${GDCM_SOURCE_DIR}/src
  97   ${GDCM_BINARY_DIR}
  98 )
  99
 100 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
 101 ADD_EXECUTABLE(gdcmTests ${Tests})
 102 IF(GDCM_VTK)
 103   IF(GDCM_DATA_ROOT)
 104     TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
 105   ELSE(GDCM_DATA_ROOT)
 106     TARGET_LINK_LIBRARIES(gdcmTests gdcm)
 107   ENDIF(GDCM_DATA_ROOT)
 108 ELSE(GDCM_VTK)
 109   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
 110 ENDIF(GDCM_VTK)
 111
 112 SET (TestsToRun ${Tests})
 113 REMOVE (TestsToRun gdcmTests.cxx)
 114
 115 # Loop over files and create executables
 116 FOREACH(file ${TEST_SOURCES})
 117   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
 118   ADD_TEST(${name} ${GDCM_TESTS} ${name})
 119 ENDFOREACH(file ${TEST_SOURCES})
 120
 121 #-----------------------------------------------------------------------------
 122
 123 # We need to test the reading of all dicom images in the gdcmData directory
 124 # First parse this directory and extract all images
 125
 126 FILE(GLOB GDCM_DATA_IMAGES_GLOB
 127   "${GDCM_DATA_ROOT}/*.acr"
 128   "${GDCM_DATA_ROOT}/*.dcm"
 129   "${GDCM_DATA_ROOT}/*.nema"
 130   "${GDCM_DATA_ROOT}/*.ima"
 131   )
 132
 133 FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB
 134   "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm"
 135   )
 136 #MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB})
 137
 138 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 139 SET(BLACK_LIST
 140   # Multiframe Papyrus format image
 141   # Just to remember this format exists, and is gdcm::File compliant
 142   # (NOT gdcm::FileHelper ...)
 143   # any contribution is welcome
 144   "PET-cardio-Multiframe-Papyrus.dcm"
 145   # From David Clunie's Compresion Dataset
 146   "D_CLUNIE_CT1_JLSN.dcm"
 147   "D_CLUNIE_CT1_JLSL.dcm"
 148   #Not a Dicom Image, but a RT Object
 149   "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
 150   #Dicom MPEG image
 151   "ETIAM_video_002.dcm"
 152   #Something stupid occured in the code for LibIDO images.
 153   #I Black list them for a while. JP
 154   #"gdcm-ACR-LibIDO.acr"
 155   "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
 156   #16 Bits per pixel images with LUT 16 Bits.
 157   #I wait to be 100% sure before releasing them. JP
 158   "rle16sti.dcm"
 159   "rle16loo.dcm"
 160   # Jasper cannot handle this image, only kakadu so far, unless you patch jasper
 161   # but then it breaks other images...
 162   "CT_Phillips_JPEG2K_Decompr_Problem.dcm"
 163
 164   #RTDOSE, 32 bits image : cannot be compressed
 165   #"RTDOSE.dcm"
 166
 167   #
 168   # ------------
 169   #
 170   #Still cause troubles (see the .README.txt file for more details)
 171   "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
 172   "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm"
 173   #The 2 previous images are identical !
 174   #--> Replaced by more significant name
 175   "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
 176
 177   #hexedit shows something *very* strange around offset 0x76e !
 178   #the images looks *over*corrupted (on disc, not from the manufacturer!)
 179   "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm"
 180
 181   # Seems this one hangs on 64 bits processors ?!?
 182   # I blacklist it until the pb is solved.
 183   # (to get some more green on the Dasboards)
 184   "MR_Philips-Intera_BreaksNOSHADOW.dcm"
 185
 186   # No way we'll ever be able to read that...
 187   "ELSCINT1_LOSSLESS_RICE.dcm"
 188
 189   # Are we even be able to support our own bugs ?
 190   "SIEMENS_MAGNETOM-12-MONO2-GDCM12-VRUN.dcm"
 191   "SIEMENS_GBS_III-16-ACR_NEMA_1-ULis2Bytes.dcm"
 192   "SIEMENS_ImageLocationUN.dcm"
 193   "TheralysGDCM120Bug.dcm"
 194   "IM-0001-0066.dcm"
 195   "DMCPACS_ExplicitImplicit_BogusIOP.dcm"
 196   "MR_ELSCINT1_00e1_1042_SQ_feff_00e0_Item.dcm"
 197   "MR_Spectroscopy_SIEMENS_OF.dcm"
 198   "ELSCINT1_PMSCT_RLE1.dcm"
 199   )
 200
 201 # Create a specific list of dicom files that we know are part of a sequence
 202 SET(SEQ_LIST
 203   "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm"
 204   )
 205
 206 # Add a special test that requires dciodvfy from dicom3tools
 207 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
 208
 209 # This is a GLOB expression, change it into a list separated with a comma and \n
 210 SET(GDCM_DATA_IMAGES)
 211 SET(GDCM_DATA_SEQ_IMAGES)
 212 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 213   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 214   IF(DCIODVFY_FOUND)
 215     #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 216     #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
 217   ENDIF(DCIODVFY_FOUND)
 218   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 219   IF(NOT bad_dicom)
 220     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 221     # SEQ_LIST is a regular expression:
 222     STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp})
 223     IF(is_seq)
 224       SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",")
 225     ENDIF(is_seq)
 226   ENDIF(NOT bad_dicom)
 227 ENDFOREACH(filename)
 228
 229 # Paranoid / dcmdump
 230 IF(GDCM_DCMTK_CHECK)
 231 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB})
 232   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 233   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 234   IF(NOT bad_dicom)
 235     IF(BUILD_EXAMPLES)
 236       FOREACH(mode a d x) #r
 237         FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb)
 238           ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt})
 239           ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp})
 240           #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt})
 241           #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm)
 242         ENDFOREACH(opt)
 243       ENDFOREACH(mode)
 244     ENDIF(BUILD_EXAMPLES)
 245   ENDIF(NOT bad_dicom)
 246 ENDFOREACH(filename)
 247 ENDIF(GDCM_DCMTK_CHECK)
 248
 249 # Populate GDCM_DATA_IMAGES:
 250 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 251   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 252 )
 253
 254 # Populate GDCM_DATA_SEQ_IMAGES:
 255 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 256   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 257 )
 258
 259 #-----------------------------------------------------------------------------
 260 # Trying to solve a bizarre problem when loading shared lib if gdcm is static
 261 # Therefore I disable the test when building SHAREDLIBS
 262 IF(UNIX AND NOT BUILD_SHARED_LIBS)
 263   ADD_LIBRARY(dynmodule MODULE dynmodule.cxx)
 264   TARGET_LINK_LIBRARIES(dynmodule gdcm)
 265   ADD_EXECUTABLE(loadmodule loadmodule.cxx )
 266   TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl)
 267   ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule)
 268 ENDIF(UNIX AND NOT BUILD_SHARED_LIBS)
 269
 270
 271 #-----------------------------------------------------------------------------
 272 # Do the build against an installed gdcm
 273 SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}")
 274 SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root")
 275 STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}"
 276   GDCM_TEST_INSTALL)
 277 IF(GDCM_TEST_INSTALL)
 278   ADD_TEST(Install
 279     ${CMAKE_CTEST_COMMAND}
 280     #  ${GDCM_INSTALL_TEST_CONFIG_TYPE}
 281     --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR}
 282     --build-generator ${CMAKE_GENERATOR}
 283     --build-project GDCM
 284     --build-makeprogram ${CMAKE_MAKE_PROGRAM}
 285     --build-noclean
 286     --build-target install)
 287 ENDIF(GDCM_TEST_INSTALL)
 288