copies and renames the files within a directory as ima-SeriesNumber-ImageNumber.dcm...

diff --git a/Example/Rename.cxx b/Example/Rename.cxx
new file mode 100644 (file)
index 0000000..7be1858
--- /dev/null
+++ b/Example/Rename.cxx
@@ -0,0 +1,184 @@
+/*=========================================================================
+                                                                                
+  Program:   gdcm
+  Module:    $RCSfile: Rename.cxx,v $
+  Language:  C++
+  Date:      $Date: 2010/09/01 11:17:32 $
+  Version:   $Revision: 1.1 $
+                                                                                
+  Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+  l'Image). All rights reserved. See Doc/License.txt or
+  http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+                                                                                
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+     PURPOSE.  See the above copyright notices for more information.
+                                                                                
+=========================================================================*/
+
+#include "gdcmFile.h"
+#include "gdcmDirList.h"
+#include "gdcmArgMgr.h"
+
+int main(int argc, char *argv[])
+{
+   START_USAGE(usage)
+   " \n copies and renames the files within a directory as ima-SeriesNumber-ImageNumber.dcm (usefull for unaware users!)\n",
+   " usage:  Rename dirin=inputDirectoryName  ",
+   "                dirout=outputDirectoryName",
+   "                [rec] [fix]                    ",
+   "      rec : user wants to parse recursively the directory                 ",
+   "      fix : user want fix length (4) for SeriesNumber/ ImageNumber        ",
+   "      debug      : user wants to run the program in 'debug mode'          ",
+   "      warning    : user wants to be warned about any oddity in the File   ",
+   "      verose     : user wants to be warned about the programm processing  ",   
+      
+   FINISH_USAGE
+   
+   // Initialize Arguments Manager   
+   GDCM_NAME_SPACE::ArgMgr *am= new GDCM_NAME_SPACE::ArgMgr(argc, argv);
+      
+   if (argc == 1 || am->ArgMgrDefined("usage") )
+   {
+      am->ArgMgrUsage(usage); // Display 'usage'
+      delete am;
+      return 1;
+   }
+   
+   const char *dirNameIn   = am->ArgMgrGetString("dirin");
+   const char *dirNameOut  = am->ArgMgrGetString("dirout");   
+   
+   if (am->ArgMgrDefined("debug"))
+      GDCM_NAME_SPACE::Debug::DebugOn();
+
+   if (am->ArgMgrDefined("warning"))
+      GDCM_NAME_SPACE::Debug::WarningOn();
+      
+   bool rec      = ( 0 != am->ArgMgrDefined("rec") );
+   bool fix      = ( 0 != am->ArgMgrDefined("fix") );
+   bool verbose  = ( 0 != am->ArgMgrDefined("verbose") );
+            
+   /* if unused Param we give up */
+   if ( am->ArgMgrPrintUnusedLabels() )
+   {
+      am->ArgMgrUsage(usage);
+      delete am;
+      return 1;
+   } 
+
+   delete am;  // we don't need Argument Manager any longer
+
+   // ----------- End Arguments Manager ---------
+   
+   // =============================== Deal with a Directory =====================
+
+#ifdef _MSC_VER
+   std::string copyinstr("copy");
+#else
+   std::string copyinstr("cp");
+#endif
+   
+   char copy[4096]; // Hope it's enough!
+   
+/*
+   char format[5]; // "%d" or "%04d"
+
+   if (fix)
+      sprintf(format, "%s", "%04d");
+   else
+      sprintf(format, "%s", "%d");   
+*/      
+  
+   std::cout << "dirNameIn [" << dirNameIn << "]" << std::endl;
+      
+   GDCM_NAME_SPACE::DirList dirList(dirNameIn, rec); // gets recursively (or not) the file list
+   GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames();
+   GDCM_NAME_SPACE::File *f;
+   bool res;
+
+   if (fileList.size() == 0)
+   {
+      std::cout << "No file found in : [" << dirNameIn << "]" << std::endl;
+   }
+
+   // Remember :
+   //0020|0011 [IS]  [Series Number]
+   //0020|0012 [IS]  [Acquisition Number]
+   //0020|0013 [IS]  [Instance Number]
+    
+   std::string  strSeriesNumber;
+   std::string  strAcquisitionNumber;
+   std::string  strInstanceNumber;
+   int SeriesNumber;
+   int AcquisitionNumber;
+   int InstanceNumber;
+      
+   for( GDCM_NAME_SPACE::DirListType::iterator it  = fileList.begin();
+                                 it != fileList.end();
+                                 ++it )
+   {
+      if (verbose)
+         std::cout << std::endl<<" Start processing :[" << it->c_str() << "]"
+                   << std::endl;
+      f = GDCM_NAME_SPACE::File::New();
+      f->SetFileName( it->c_str() );
+      res = f->Load();
+
+      if ( !res )
+      {
+            std::cout << "Cannot process file [" << it->c_str() << "]" 
+                      << std::endl;
+            std::cout << "Either it doesn't exist, or it's read protected " 
+                      << std::endl;
+            std::cout << "or it's not a Dicom File, or its 'header' is bugged" 
+                      << std::endl;
+            std::cout << "use 'PrintFile filein=... debug' "
+                      << "to try to guess the pb"
+                      << std::endl;
+            f->Delete();
+            continue;
+      }
+
+      int number;
+ 
+      strSeriesNumber = f->GetEntryString(0x0020,0x0011);
+      if ( strSeriesNumber != GDCM_NAME_SPACE::GDCM_UNFOUND ) 
+      {
+       if (verbose) std::cout << " SeriesNumber [" <<  strSeriesNumber << "]" << std::endl;
+         SeriesNumber = atoi(strSeriesNumber.c_str());
+      }
+    
+      strAcquisitionNumber = f->GetEntryString(0x0020,0x0012);
+      if ( strAcquisitionNumber != GDCM_NAME_SPACE::GDCM_UNFOUND ) 
+      {
+       if (verbose) std::cout << " AcquisitionNumber [" <<  strAcquisitionNumber << "]" << std::endl;
+         AcquisitionNumber = atoi(strAcquisitionNumber.c_str());
+         number = AcquisitionNumber;
+      }  
+
+      strInstanceNumber = f->GetEntryString(0x0020,0x0013);
+      if ( strInstanceNumber != GDCM_NAME_SPACE::GDCM_UNFOUND ) 
+      {
+       if (verbose) std::cout << " InstanceNumber [" <<  strInstanceNumber << "]" << std::endl;
+         InstanceNumber = atoi(strInstanceNumber.c_str());
+         number = InstanceNumber;
+      }
+
+      if (fix) 
+         sprintf (copy, "%s %s %s%cima-%04d-%04d.dcm", 
+                      copyinstr.c_str(),
+                      it->c_str(),
+                      dirNameOut, GDCM_NAME_SPACE::GDCM_FILESEPARATOR, SeriesNumber,  number);
+      else
+         sprintf (copy, "%s %s %s%cima-%d-%d.dcm", 
+                      copyinstr.c_str(),
+                      it->c_str(),
+                      dirNameOut, GDCM_NAME_SPACE::GDCM_FILESEPARATOR, SeriesNumber,  number);
+        
+    
+       if (verbose) std::cout << copy << std::endl;
+       system (copy);      
+   }
+}      
+      
+