0018|6011 is a 'Sequence' (SQ), composed of various Sequence Items(SQItem)
Each SQItem is a set of Elements (an Element may be a DataElement (D) or a
-Sequence (S), recursively.
+Sequence (S), recursively, within any level of embedding :
+
+S 0029|263d [SQ] []
+ | --- SQItem number 0
+ | D fffe|e000 [UL] [Item ]
+ | D 0008|0000 [UL] [Group Length] [12]
+ | D 0008|0001 [UL] [Length to End (RET) ] [28776]
+ | D 0029|0000 [UL] [Group Length] [28764]
+ | D 0029|002a [LO] [Private Creator] [SPI-P-Private_ICS Release 1;6 ]
+ | D 0029|2a02 [LO] [] [PERFUSION_MR_T2STAR_GAMMA_VARIATE_ANALYSER]
+ | S 0029|2a06 [SQ] []
+ | | --- SQItem number 0
+ | | D fffe|e000 [UL] [Item ]
+ | | D 0008|0000 [UL] [Group Length] [12]
+ | | D 0008|0001 [UL] [Length to End (RET) ] [20]
+ | | D fffe|0000 [UL] [Group Length]
+ | | --- SQItem number 1
+ | | D fffe|e000 [UL] [Item ]
+ | | D 0008|0000 [UL] [Group Length] [12]
+ | | D 0008|0001 [UL] [Length to End (RET) ] [194]
+ | | D 0029|0000 [UL] [Group Length] [182]
+ | | D 0029|002a [LO] [Private Creator] [SPI-P-Private_ICS Release 1;6 ]
+ | | S 0029|2a07 [SQ] []
+ | | | --- SQItem number 0
+ | | | D fffe|e000 [UL] [Item ]
+ | | | D 0008|0000 [UL] [Group Length] [12]
+ | | | D 0008|0001 [UL] [Length to End (RET) ] [100]
+ | | | D 0029|0000 [UL] [Group Length] [88]
+ | | | D 0029|002a [LO] [Private Creator] [SPI-P-Private_ICS Release 1;6 ]
+ | | | D 0029|2a0a [US] [] [1]
+ | | | D 0029|2a0b [US] [] [2]
+ | | | D 0029|2a0c [US] [] [2]
+ | | | D 0029|2a0d [US] [] [1]
+ | | | D 0029|2a10 [US] [] [1]
+ | | | S 0029|2a2e [SQ] []
+ | | | | --- SQItem number 0
+ | | | | D fffe|e000 [UL] [Item ]
+ | | | | D 0008|0000 [UL] [Group Length] [12]
+ | | | | D 0008|0001 [UL] [Length to End (RET) ] [2266]
+ | | | | D 0029|0000 [UL] [Group Length] [2254]
+ | | | | D 0029|0025 [LO] [Private Creator] [SPI-P-Private_ICS Release 1;1 ]
+ | | | | D 0029|0027 [LO] [Private Creator] [SPI-P-Private_ICS Release 1;3 ]
+ | | | | D 0029|0028 [LO] [Private Creator] [SPI-P-Private_ICS Release 1;4 ]
+ | | | | D 0029|2500 [SL] [] [43]
+ | | | | D 0029|256b [FD] [] [0.5]
+ | | | | D 0029|2700 [LO] [] [L1]
+ | | | | D 0029|276a [FL] [] [0.35]
+ | | | | S 0029|27c0 [SQ] []
+ | | | | | --- SQItem number 0
+ | | | | | D fffe|e000 [UL] [Item ]
+ | | | | | D 0008|0000 [UL] [Group Length] [12]
+ | | | | | D 0008|0001 [UL] [Length to End (RET) ] [110]
+ | | | | | D 0029|0000 [UL] [Group Length] [98]
+ | | | | | D 0029|0027 [LO] [Private Creator] [SPI-P-Private_ICS Release 1;3 ]
+ | | | | | D 0029|27b0 [SL] [] [0]
+ | | | | | D 0029|27b1 [FL] [] [0]
+ | | | | | D 0029|27b2 [FL] [] [0]
+ | | | | | D 0029|27b4 [FL] [] [0]
+ | | | | | D 0029|27b9 [FL] [] [1]
+ | S 0029|2a14 [SQ] []
+ | | --- SQItem number 0
+ | | D fffe|e000 [UL] [Item ]
+ | | D 0008|0000 [UL] [Group Length] [12]
+
Probabely, you'll never have to deal with Sequences (hope so!).
1) How to Read a DICOM File
The first step is to load the file header :
gdcm::File *f = new gdcm::File();
- f->SetLoadMode(NO_SEQ); | depending on what
- f->SetLoadMode(NO_SHADOW); | you want *not*
- f->SetLoadMode(NO_SEQ | NO_SHADOW);| to load from the
- f->SetLoadMode(NO_SHADOWSEQ); | target file
- f->SetFileName(fileName);
- f->Load( );
+ f->SetLoadMode(LD_NOSEQ); | depending on what
+ f->SetLoadMode(LD_NOSHADOW); | you want *not*
+ f->SetLoadMode(LD_NOSEQ | LD_NOSHADOW);| to load from the
+ f->SetLoadMode(LD_NOSHADOWSEQ); | target file
+ f->SetFileName(fileName);
+ f->Load( );
Note :
The 'long' Data Element (>4096 char) are not loaded by default
Note :
Except if you are really aware about it, do *not* use SetLoadMode().
+LD_ALL is the default.
Check if the file is gdcm-readable.
void *imageData = fh->GetImageData();
uint32_t dataSize = fh->GetImageDataSize();
+If you don't want to convert a "Grey level images + LUT" into "RGB Pixel image" use
+ gdcm::FileHelper *fh = gdcm::FileHelper::New(f);
+ void *imageData = fh->GetImageDataRaw();
+ uint32_t dataSize = fh->GetImageDataRawSize();
1-1-1-3) Get the value of a single Dicom DataElement
fileH->SetContentType(GDCM_NAME_SPACE::UNMODIFIED_PIXELS_IMAGE);
// depending on what you did before!
-
-//--> Set the Image Data
- fileH->SetImageData((unsigned char *)imageData,size);
- // ( Casting as 'unsigned char *' is just to avoid warnings.
- // It doesn't change the values. )
//--> Set the compression type :
- fileH->SetWriteTypeToJPEG();
- fileH->SetWriteTypeToJPEG2000();
- fileH->SetWriteTypeToDcmExplVR(); // Explicit Value Represtation (no compression)
- fileH->SetWriteTypeToDcmImplVR(); // Implicit Value Represtation (no compression)
+ fileH->SetWriteTypeToJPEG(); // lossles compression
+ fileH->SetWriteTypeToJPEG2000(); // lossles compression
+ fileH->SetWriteTypeToDcmExplVR(); // Explicit Value Representation (no compression)
+ fileH->SetWriteTypeToDcmImplVR(); // Implicit Value Representation (no compression)
fileH->SetWriteModeToRaw(); // Probabely you don't want to convert any LUT into RGB pixels ...
+//--> Set the Image Data
+ fileH->SetImageData((unsigned char *)imageData,size);
+ // ( Casting as 'unsigned char *' is just to avoid warnings.
+ // It doesn't change the values. )
+ // or
+ fileH->SetUserData((unsigned char *)imageData,size); // performs compression, when required
+
//-> Write !
fileH->Write(fileName.str());
For converting 'Decimal String'
-->bool GetDSValue(std::vector <double> &valueVector);
</pre>
+
<LI> Avoid too many source file modifications from gdcm1.2 to gdcm1.3
<pre>
use :
-#define ValEntry DataEntry
+#define ValEntry DataEntry
+#define BinEntry DataEntry
+
+#define GetEntryValue(g,e) GetEntryString(g,e)
+#define GetEntryForcedAsciiValue(g,e) GetEntryString(g,e)
+
+#define GetValEntry(g,e) GetDataEntry(g,e)
+#define GetBinEntry(g,e) GetDataEntry(g,e)
+#define GetValue() GetString()
+
+#define InsertValEntry(v,g,e,vr) InsertEntryString(v,g,e,vr) // warning mind the VR!
+#define InsertBinEntry(b,l,g,e,vr) InsertEntryBinArea(b,l,g,e,vr)
+
+#define SetValEntry(c,g,e) SetEntryString(c,g,e) | !!
+#define SetValEntry(c,en) SetEntryString(c,en) | !!
+
+#define SetBinEntry(c,l,en) SetEntryBinArea(c,l,en) | !!
+#define SetBinEntry(c,l,g,e) SetEntryBinArea(c,l,g,e) | !!
-#define GetEntryValue(g,e) GetEntryString(g,e)
-#define GetValEntry(g,e) GetDataEntry(g,e)
-#define GetValue() GetString()
-#define InsertValEntry(a,b,c) InsertEntryString(a,b,c) // warning mind the VR!
+#define NewValEntry(g,e,vr) NewDataEntry(g,e,vr)
+#define NewBinEntry(g,e,vr) NewDataEntry(g,e,vr)
</pre>
</UL>
git://git.creatis.insa-lyon.fr / gdcm.git / commitdiff