checkReadColor.sh

   1 # Check READ
   2 #-----------
   3 #
   4 # We just write RAW Files and AFFIM them
   5 # to be sure the reading was OK
   6 #
   7
   8 #RGB
   9  ---
  10
  11 gdcmxxTests gdcmxxTests testWrite 8BitsUncompressedColor.dcm r
  12 affim filein=8BitsUncompressedColor.dcm.raw dimx=800 dimy=535 nbit=24
  13
  14 gdcmxxTests testWrite US-RGB-8-epicard.dcm r
  15 echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=1"
  16 echo "         PhotometricInterpretation=RGB"
  17 affim filein=US-RGB-8-epicard.dcm.raw  dimx=640 dimy=480 nbit=24
  18
  19 gdcmxxTests testWrite US-RGB-8-esopecho.dcm r
  20 echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=0"
  21 echo "         PhotometricInterpretation=RGB"
  22 affim filein=US-RGB-8-esopecho.dcm.raw dimx=256 dimy=120 nbit=24
  23
  24 gdcmxxTests testWrite gdcm-RGB-LibIDORect.acr r
  25 affim filein=gdcm-RGB-LibIDORect.acr.raw  DIMX=400 DIMY=100 nbit=24
  26
  27 #YBR_FULL_422
  28 #------------
  29
  30 gdcmxxTests testWrite US.3405.1.dcm r  # YBR_FULL_422
  31 echo "expected  pixelType=8U SamplesPerPixel=1 PlanarConfiguration=0"
  32 echo "          PhotometricInterpretation=RGB"
  33 affim filein=US.3405.1.dcm.raw DIMX=768 DIMY=576 nbit=24
  34
  35 gdcmxxTests testWrite US.1.2.dcm r
  36 echo "expected : A lot of Fragments (40), nb Frames = 40 ;-)"
  37 echo "expected  pixelType=8U SamplesPerPixel=3 PlanarConfiguration=0"
  38 echo "          PhotometricInterpretation=YBR_FULL_422"
  39 affim filein=US.1.2.dcm.raw  DIMX=768 DIMY=576  nbit=24
  40 affim filein=US.1.2.dcm.raw  DIMX=768 DIMY=576  nbit=24 offset=13271040
  41 affim filein=US.1.2.dcm.raw  DIMX=768 DIMY=576  nbit=24 offset=39813120
  42
  43
  44 #PALETTE COLOR
  45 #-------------
  46
  47 gdcmxxTests testWrite gdcm-US-ALOKA-16.dcm r
  48 echo "expected  pixelType=16U SamplesPerPixel=1 PlanarConfiguration=0"
  49 echo "          PhotometricInterpretation=PALETTE COLOR"
  50 echo "expected : Gray image since 'Segmented xxx Palette Color LUT Data' not yet taken into account"
  51 echo "neither e-film no DicomWorks deals with the color"
  52 echo "breaks xmedcon"
  53 ls -l gdcm-US-ALOKA-16.dcm*
  54 echo "expected 1843200 (large enough to hold 3 16-bits planes)"
  55 affim dimx=640 dimy=480 filein=gdcm-US-ALOKA-16.dcm.raw nbit=16
  56
  57 gdcmxxTests testWrite US-PAL-8-10x-echo.dcm r
  58 echo "expected pixelType=8U SamplesPerPixel=1 PlanarConfiguration=0"
  59 echo "         PhotometricInterpretation=PALETTE COLOR"
  60 echo "         nb Frames (DIMZ): 10"
  61 echo "expected : Parsing 10 'single fragment' Segments"
  62 echo "           Reading 10 'single fragment' Segments (ouf!)"
  63 affim filein=US-PAL-8-10x-echo.dcm.raw DIMX=600 DIMY=430 nbit=24
  64 affim filein=US-PAL-8-10x-echo.dcm.raw DIMX=600 DIMY=430 nbit=24 offset=774000
  65
  66 gdcmxxTests testWrite 8BitsRunLengthColor.dcm r
  67 echo "expected pixelType=8U SamplesPerPixel=1 PlanarConfiguration=2"
  68 echo "         PhotometricInterpretation=PALETTE COLOR"
  69 echo "expected correct color image"
  70 affim filein=8BitsRunLengthColor.dcm.raw DIMX=800 DIMY=535 nbit=24
  71
  72 gdcmxxTests testWrite OT-PAL-8-face.dcm r
  73 echo "expected  pixelType=8U SamplesPerPixel=3 PlanarConfiguration=1"
  74 echo "          PhotometricInterpretation=PALETTE COLOR"
  75 affim filein=OT-PAL-8-face.dcm.raw dimx=640 dimy=480 nbit=24
  76
  77 #YBR_FULL
  78 #--------
  79 gdcmxxTests testWrite FMAG0001.dcm r
  80 echo "expected pixelType=8U SamplesPerPixel=3"
  81 echo "         PlanarConfiguration=1 PhotometricInterpretation=YBR_FULL"
  82 echo "         nb Frames (DIMZ) : 1"
  83 ls -l FMAG0001.dcm.raw
  84 affim filein=FMAG0001.dcm.raw DIMX=768 DIMY=576 nbit=24
  85
  86
  87 gdcmxxTests testWrite QMAG0001.dcm r
  88 echo "expected pixelType=8U SamplesPerPixel=3"
  89 echo "         PlanarConfiguration=1 PhotometricInterpretation=YBR_FULL"
  90 ls -l QMAG0001.dcm.raw
  91 affim filein=QMAG0001.dcm.raw DIMX=384 DIMY=288 nbit=24;
  92
  93 # images from :
  94 # http://www.leadtools.com/SDK/Medical/DICOM/ltdc19.htm
  95 #------------------------------------------------------
  96
  97 gdcmxxTests testWrite 8BitsJpegLossyGrayScale.dcm r
  98 affim filein=8BitsJpegLossyGrayScale.dcm.raw DIMX=800 DIMY=535
  99
 100 gdcmxxTests testWrite 8BitsRunLengthColor.dcm r
 101 affim filein=8BitsRunLengthColor.dcm.raw DIMX=800 DIMY=535  nbit=24
 102
 103 gdcmxxTests testWrite 8BitsRunLengthGrayScale.dcm r
 104 affim filein=8BitsRunLengthGrayScale.dcm.raw DIMX=800 DIMY=535
 105
 106 gdcmxxTests testWrite 8BitsUncompressedColor.dcm r
 107 affim filein=8BitsUncompressedColor.dcm.raw DIMX=800 DIMY=535  nbit=24
 108
 109 gdcmxxTests testWrite 8BitsUncompressedGrayScale.dcm r
 110 affim filein=8BitsUncompressedGrayScale.dcm.raw DIMX=800 DIMY=535
 111
 112 gdcmxxTests testWrite 16BitsJpegLosslessGrayScale.dcm r
 113 affim filein=16BitsJpegLosslessGrayScale.dcm.raw DIMX=800 DIMY=535 nbit=16
 114
 115 gdcmxxTests testWrite 16BitsRunLengthGrayScale.dcm r
 116 echo "expected pixelType=16U SamplesPerPixel=1 PlanarConfiguration=2"
 117 echo "         PhotometricInterpretation=MONOCHROME2"
 118 affim filein=16BitsRunLengthGrayScale.dcm.raw  DIMX=800 DIMY=535 nbit=16
 119
 120 gdcmxxTests testWrite 16BitsUncompressedGrayScale.dcm r
 121 affim filein=16BitsUncompressedGrayScale.dcm.raw DIMX=800 DIMY=535  nbit=16
 122
 123 gdcmxxTests testWrite 24BitsJpegLosslessColor.dcm r
 124 echo "expected  DIMX=800 DIMY=535 DIMZ=1 "
 125 echo "          pixelType=8U SamplesPerPixel=3 PlanarConfiguration=0"
 126 echo "          PhotometricInterpretation=RGB "
 127 affim filein=24BitsJpegLosslessColor.dcm.raw DIMX=800 DIMY=535  nbit=24
 128
 129 gdcmxxTests testWrite 24BitsJpegLossyColor.dcm r
 130 affim filein=24BitsJpegLossyColor.dcm.raw DIMX=800 DIMY=535  nbit=24
 131
 132 gdcmxxTests testWrite 24BitsUncompressedColor.dcm r
 133 affim filein=24BitsUncompressedColor.dcm.raw DIMX=800 DIMY=535 nbit=24
 134
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