checkWriteExplicit.sh

   1 # Check READ
   2 # ==========
   3 #
   4 # This script :
   5 #   - gdcmreads the images of gdcmData
   6 #   - gdcmwrites the result, with Explicit Value Representation
   7 #                into a '.XDCM' file
   8 #   - tests the result
   9 #       - using creatis' LibIDO/affimdcm (you may drop it)
  10 #       - using mathieu malaterre's vtkgdcmViewer
  11 #       - using Eric Nolf's xmedcon
  12 #       - the full checking should be using e-film,
  13 #                  but it doesn't work on Windoz
  14 #
  15 #
  16 # Sebastien Barre's files have no interest here, since the header is
  17 # a *very clean* ACR-NEMA
  18 # Our problems come from DICOM V3, with SQ, shadow groups, etc.
  19
  20 # --> EVERYWHERE, with XMEDCOM :
  21 # --> warning: Incorrect OB value representation (fixed)
  22 # --> to be fixed in the WRITER ...
  23
  24 #No Swap Info
  25 #------------
  26 /home/jpr/JUNK/gdcmbin/bin/Write mr176621.dcm x;
  27 /home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument mr176621.dcm.XDCM 2;  .
  28 vtkgdcmViewer mr176621.dcm.XDCM; #  OK
  29 xmedcon mr176621.dcm.XDCM; # warning: No transfer syntax found
  30                            # warning: Tag with uneven length
  31                            #
  32                            #breaks because 'DICM" without group 0000
  33                            # Write DCM needs 'CheckFileHeaderConsistency' method
  34
  35 # No Transfert Syntax
  36 #--------------------
  37
  38 #Big Endian
  39
  40 #      -------------------------------------------  BIG SOUCY !!
  41 affimdcm filein=cr172241.dcm zoom=-4;
  42 xmedcon cr172241.dcm;  # OK
  43 /home/jpr/JUNK/gdcmbin/bin/Write cr172241.dcm r;
  44 affim filein=cr172241.dcm.RAW nbit=16  DIMX=1792 DIMY=2392;
  45 /home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument cr172241.dcm 2;  #OK
  46 # But ... :
  47 vtkgdcmViewer cr172241.dcm;              # breaks (white image)   WHITE IMAGE ?!?
  48                              # Doesn't break DaVaW ...
  49 /home/jpr/JUNK/gdcmbin/bin/Write cr172241.dcm x;
  50 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument cr172241.dcm.XDCM 2;   #OK
  51 xmedcon cr172241.dcm.XDCM;         # OK Incorrect OB value representation (fixed)
  52 affimdcm filein=cr172241.dcm.XDCM; # OK
  53 vtkgdcmViewer cr172241.dcm.XDCM;               # breaks ?!? White image !
  54
  55
  56 vtkgdcmViewer Wrist.pap;                     # PAPYRUS 3.0 single frame image
  57 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument Wrist.pap 2;
  58 /home/jpr/JUNK/gdcmbin/bin/Write Wrist.pap x;           # OK
  59 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument Wrist.pap.XDCM
  60
  61
  62 /home/jpr/JUNK/gdcmbin/bin/Write cr_45031.dcm x;
  63 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument cr_45031.dcm.XDCM 2;
  64 vtkgdcmViewer cr_45031.dcm.XDCM;          #OK
  65 xmedcon  cr_45031.dcm.XDCM;   #OK
  66
  67 /home/jpr/JUNK/gdcmbin/bin/Write CR-MONO1-10-chest.dcm x;
  68 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument CR-MONO1-10-chest.dcm.XDCM 2; #OK
  69 vtkgdcmViewer CR-MONO1-10-chest.dcm.XDCM;             #OK
  70 xmedcon CR-MONO1-10-chest.dcm.XDCM;       #OK Incorrect OB value representation (fixed)
  71
  72 /home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-12-lomb-an2.acr2 x;
  73 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument CT-MONO2-12-lomb-an2.acr2.XDCM 2; # OK
  74 vtkgdcmViewer CT-MONO2-12-lomb-an2.acr2.XDCM; #OK
  75 xmedcon CT-MONO2-12-lomb-an2.acr2.XDCM; #OK Incorrect OB value representation (fixed)
  76
  77 xmedcon gdcm-MR-SIEMENS-16.acr1; # Original OK
  78 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument gdcm-MR-SIEMENS-16-1.acr; #OK
  79 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-SIEMENS-16-1.acr x;
  80 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument gdcm-MR-SIEMENS-16-1.acr.XDCM 2;
  81 vtkgdcmViewer  gdcm-MR-SIEMENS-16-1.acr.XDCM;
  82 xmedcon gdcm-MR-SIEMENS-16.acr1.XDCM; #breaks error: No images found
  83
  84 xmedcon gdcm-MR-SIEMENS-16.acr2 #original OK
  85 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-SIEMENS-16-2.acr x;
  86 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument  gdcm-MR-SIEMENS-16-2.acr.XDCM 2;
  87 vtkgdcmViewer gdcm-MR-SIEMENS-16-2.acr.XDCM; #OK
  88 xmedcon gdcm-MR-SIEMENS-16.acr2.XDCM; #breaks
  89                                       # --> TODO fix group length for odd groups#Feb 03 18:50:24 log[4419]: warning: No transfer syntax found
  90 #Feb 03 18:50:24 log[4419]: warning: Tag with uneven length
  91 #Feb 03 18:50:24 log[4419]: error: No images found
  92
  93 /home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-12-an2.acr2 x;
  94 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument newACR1000.nema.XDCM 2;
  95 vtkgdcmViewer MR-MONO2-12-an2.acr2.XDCM;
  96 xmedcon MR-MONO2-12-an2.acr2.XDCM; # OK warning: Incorrect OB value representation
  97
  98 /home/jpr/JUNK/gdcmbin/bin/Write newACR1000.nema x;          # == gdcmMR-SIEMENS-16.acr2
  99 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument newACR1000.nema.XDCM; #OK
 100 vtkgdcmViewer newACR1000.nema.XDCM; #OK
 101 xmedcon newACR1000.nema.XDCM; # breaks : no image found
 102
 103 /home/jpr/JUNK/gdcmbin/bin/Write oldACR00001.ima x;          # == gdcm-MR-SIEMENS.16.acr1
 104 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument oldACR00001.ima.XDCM; # OK
 105 vtkgdcmViewer oldACR00001.ima.XDCM; #OK
 106 xmedcon oldACR00001.ima.XDCM; # breaks : no image found
 107
 108 /home/jpr/JUNK/gdcmbin/bin/Write OT-MONO2-8-a7.dcm x;
 109 vtkgdcmViewer OT-MONO2-8-a7.dcm.XDCM;        #OK
 110 xmedcon OT-MONO2-8-a7.dcm.XDCM ; #OK
 111
 112 #No Samples Per Pixel
 113 #--------------------
 114 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-CR-DCMTK-16-NonSamplePerPix.dcm x;
 115 affim filein=gdcm-CR-DCMTK-16-NonSamplePerPix.dcm;
 116 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument  gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM 2; # OK
 117 vtkgdcmViewer gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM;              #OK
 118 xmedcon gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM         #OK
 119
 120 #Unnormalized Rectangular LibIDO format image
 121 #--------------------------------------------
 122 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-ACR-LibIDO.acr x;
 123 vtkgdcmViewer gdcm-ACR-LibIDO.acr.XDCM; # OK
 124 xmedcon gdcm-ACR-LibIDO.acr.XDCM; #inverts x and y (of course)
 125
 126 #Bits Allocated =12, Bits Stored=12
 127 #----------------------------------
 128 #MR Philips (once upon a time in Lyon-Sud)
 129 /home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-12-angio-an1.acr1 x;
 130 vtkgdcmViewer MR-MONO2-12-angio-an1.acr1.XDCM;       # shitty image
 131 xmedcon MR-MONO2-12-angio-an1.acr1.XDCM; #  pas mieux : warning: Incorrect PixelData length
 132
 133 #RGB
 134 #---
 135 /home/jpr/JUNK/gdcmbin/bin/Write US.3405.1.dcm x;
 136 echo "expected  pixelType=8U SamplesPerPixel=1 PlanarConfiguration=0";
 137 echo "          PhotometricInterpretation=RGB";
 138 vtkgdcmViewer US.3405.1.dcm.XDCM; #OK
 139 xmedcon US.3405.1.dcm.XDCM; #OK
 140
 141 #      -------------------------------------------  KING SIZE SOUCY !!
 142
 143 /home/jpr/JUNK/gdcmbin/bin/Write OT-PAL-8-face.dcm x;
 144 echo "expected  pixelType=8U SamplesPerPixel=3 PlanarConfiguration=1";
 145 echo "          PhotometricInterpretation=PALETTE COLOR";
 146 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocumentOT-PAL-8-face.dcm.XDCM; OK
 147 affimdcm filein=OT-PAL-8-face.dcm.XDCM; #OK
 148 vtkgdcmViewer OT-PAL-8-face.dcm.XDCM;               #   seg fault .!?
 149 xmedcon OT-PAL-8-face.dcm.XDCM; #OK
 150
 151 /home/jpr/JUNK/gdcmbin/bin/Write 8BitsUncompressedColor.dcm x;
 152 vtkgdcmViewer 8BitsUncompressedColor.dcm.XDCM;        #   seg fault .!?
 153 xmedcon 8BitsUncompressedColor.dcm.XDCM ; #OK
 154
 155 # Implicit VR - Little Endian
 156 #-----------------------------
 157
 158 /home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-ankle.dcm x;
 159  xmedcon CT-MONO2-16-ankle.dcm.XDCM; #ok
 160  vtkgdcmViewer CT-MONO2-16-ankle.dcm.XDCM; #ok
 161  /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument  CT-MONO2-16-ankle.dcm 2; #ok
 162
 163 /home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-ort.dcm x;
 164 vtkgdcmViewer CT-MONO2-16-ort.dcm.XDCM;  #OK
 165 xmedcon CT-MONO2-16-ort.dcm.XDCM;  #OK
 166
 167
 168 /home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-8-abdo.dcm x;
 169 vtkgdcmViewer CT-MONO2-8-abdo.dcm.XDCM; #OK
 170 xmedcon CT-MONO2-8-abdo.dcm.XDCM; #OK
 171
 172 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-PHILIPS-16.dcm x;
 173 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument gdcm-MR-PHILIPS-16.dcm.XDCM 2; #OK
 174 vtkgdcmViewer gdcm-MR-PHILIPS-16.dcm.XDCM; # OK
 175 xmedcon gdcm-MR-PHILIPS-16.dcm.XDCM; # error: No images found
 176 xmedcon gdcm-MR-PHILIPS-16.dcm; # OK with original image
 177
 178 /home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-16-head.dcm x;
 179 vtkgdcmViewer MR-MONO2-16-head.dcm.XDCM;  #OK
 180 xmedcon MR-MONO2-16-head.dcm.XDCM;  #OK
 181
 182 /home/jpr/JUNK/gdcmbin/bin/Write multiframe1Integris.dcm x;
 183 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument CT-MONO2-8-abdo.dcm.XDCM 2; #OK
 184 vtkgdcmViewer multiframe1Integris.dcm.XDCM; #OK
 185 xmedcon multiframe1Integris.dcm.XDCM; #breaks No images found
 186 xmedcon multiframe1Integris.dcm;
 187
 188 /home/jpr/JUNK/gdcmbin/bin/Write multiframe2GE.dcm x;
 189 vtkgdcmViewer multiframe2GE.dcm.XDCM; #OK
 190 #breaks xmedcon
 191 xmedcon multiframe2GE.dcm.XDCM; #breaks No images found
 192
 193 vtkgdcmViewer irmPhlipsNew1.dcm;
 194 /home/jpr/JUNK/gdcmbin/bin/Write irmPhlipsNew1.dcm x; # == gdcm-MR-PHILIPS-16.dcm
 195 vtkgdcmViewer irmPhlipsNew1.dcm.XDCM;     #OK
 196 xmedcon irmPhlipsNew1.dcm.XDCM; #breaks : No images found
 197
 198 #avec imagette (icone)
 199
 200 vtkgdcmViewer icone.dcm;   #OK
 201 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument icone.dcm 2 | grep fffe;
 202 echo "so many 0xfffe ! (274)"
 203
 204 /home/jpr/JUNK/gdcmbin/bin/Write icone.dcm x;
 205 xmedcon icone.dcm; #original image OK
 206 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument icone.dcm.XDCM 2;
 207 #/home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument OK; vtkgdcmViewer OK; breaks xmedcom
 208 vtkgdcmViewer icone.dcm.XDCM; #   shitty image        --> TODO : FIX (once again)icon pb
 209 xmedcon icone.dcm.XDCM; #breaks
 210
 211 #Palette
 212
 213 # ???
 214 # 8 Bits  ?
 215 # 16 Bits ?
 216
 217 #Explicit VR - Little Endian
 218 #----------------------------
 219 /home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-brain.dcm x;
 220 vtkgdcmViewer CT-MONO2-16-brain.dcm.XDCM;       #OK
 221 xmedcon CT-MONO2-16-brain.dcm.XDCM; #OK
 222
 223 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument gdcm-MR-PHILIPS-16-Multi-Seq.dcm 2;
 224 xmedcon gdcm-MR-PHILIPS-16-Multi-Seq.dcm #OK :Skip PHILIPS premature item bug
 225 vtkgdcmViewer gdcm-MR-PHILIPS-16-Multi-Seq.dcm; #OK
 226 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-PHILIPS-16-Multi-Seq.dcm x;
 227 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM 2; #pixel group missing??!?
 228 #vtkgdcmViewer gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM;            #shitty image, ofcourse
 229 xmedcon gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM;       #  works ?!?
 230 vtkgdcmViewer gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM;
 231
 232
 233 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-PHILIPS-16-NonRectPix.dcm x;
 234 vtkgdcmViewer gdcm-MR-PHILIPS-16-NonRectPix.dcm.XDCM; #OK
 235 xmedcon gdcm-MR-PHILIPS-16-NonRectPix.dcm.XDCM; #OK warning: Incorrect sequence length
 236
 237 /home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-8-16x-heart.dcm x;  #multiframe # equals to ???
 238 vtkgdcmViewer MR-MONO2-8-16x-heart.dcm.XDCM;       #OK
 239 xmedcon MR-MONO2-8-16x-heart.dcm.XDCM; #OK
 240
 241 /home/jpr/JUNK/gdcmbin/bin/Write NM-MONO2-16-13x-heart.dcm x;  #multiframe
 242 vtkgdcmViewer NM-MONO2-16-13x-heart.dcm.XDCM;       #OK
 243 xmedcon NM-MONO2-16-13x-heart.dcm.XDCM; #OK
 244
 245 /home/jpr/JUNK/gdcmbin/bin/Write sonataMonaco.dcm x;
 246 vtkgdcmViewer sonataMonaco.dcm.XDCM;       #OK
 247 xmedcon sonataMonaco.dcm.XDCM; #OK
 248
 249 #MultiFrame
 250 /home/jpr/JUNK/gdcmbin/bin/Write US-MONO2-8-8x-execho.dcm x;
 251 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument US-MONO2-8-8x-execho.dcm.XDCM;
 252 vtkgdcmViewer US-MONO2-8-8x-execho.dcm.XDCM;       # OK
 253 xmedcon US-MONO2-8-8x-execho.dcm.XDCM; #OK
 254
 255 #RGB
 256
 257 /home/jpr/JUNK/gdcmbin/bin/Write US-RGB-8-epicard.dcm x;
 258 echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=1";
 259 echo "         PhotometricInterpretation=RGB";
 260 vtkgdcmViewer US-RGB-8-epicard.dcm.XDCM; #OK
 261 xmedcon US-RGB-8-epicard.dcm.XDCM; #OK
 262
 263 /home/jpr/JUNK/gdcmbin/bin/Write US-RGB-8-esopecho.dcm x;
 264 echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=0";
 265 echo "         PhotometricInterpretation=RGB",
 266 xmedcon US-RGB-8-esopecho.dcm.XDCM; #OK
 267
 268 # Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1])
 269 #--------------------------------------------------------------------------
 270 # (JPEG Lossless)
 271
 272 /home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-chest.dcm x;
 273 vtkgdcmViewer CT-MONO2-16-chest.dcm.XDCM; #OK
 274 xmedcon CT-MONO2-16-chest.dcm.XDCM; #OK
 275
 276 /home/jpr/JUNK/gdcmbin/bin/Write 012345.002.050.dcm x;
 277 vtkgdcmViewer 012345.002.050.dcm.XDCM; #OK
 278 xmedcon 012345.002.050.dcm.XDCM; #OK
 279
 280 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-LossLess3a.dcm x;
 281 vtkgdcmViewer gdcm-JPEG-LossLess3a.dcm.XDCM ; #OK
 282 xmedcon gdcm-JPEG-LossLess3a.dcm.XDCM;  #OK
 283
 284 /home/jpr/JUNK/gdcmbin/bin/Write XA-MONO2-8-12x-catheter.dcm x;
 285 vtkgdcmViewer XA-MONO2-8-12x-catheter.dcm.XDCM; #OK
 286 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument XA-MONO2-8-12x-catheter.dcm.XDCM 2;
 287 xmedcon XA-MONO2-8-12x-catheter.dcm.XDCM; #OK
 288
 289 /home/jpr/JUNK/gdcmbin/bin/Write xa_integris.dcm x;
 290 echo "a lot of fragments expected here";
 291 vtkgdcmViewer xa_integris.dcm.XDCM #OK
 292 xmedcon xa_integris.dcm.XDCM #OK
 293
 294 /home/jpr/JUNK/gdcmbin/bin/Write 16BitsJpegLosslessGrayScale.dcm x;
 295 vtkgdcmViewer 16BitsJpegLosslessGrayScale.dcm.XDCM #OK
 296 xmedcon 16BitsJpegLosslessGrayScale.dcm.XDCM #OK
 297
 298 #comming from GE dlx via VTServer
 299 vtkgdcmViewer I9000001.dcm;
 300 /home/jpr/JUNK/gdcmbin/bin/Write I9000001.dcm x;
 301 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument I9000001.dcm.XDCM 2; # pixel group NOT FOUND ??!??
 302 #black image
 303 vtkgdcmViewer I9000001.dcm.XDCM;
 304 #no image found
 305 xmedcon I9000001.dcm.XDCM;
 306
 307 #JPEG Extended (Process 2 & 4) // 16 bits
 308 #-----------------------------
 309 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-Extended.dcm x;
 310 vtkgdcmViewer gdcm-JPEG-Extended.dcm.XDCM; #OK
 311 xmedcon gdcm-JPEG-Extended.dcm.XDCM; #OK
 312
 313 /home/jpr/JUNK/gdcmbin/bin/Write jpeglossy1.dcm x;
 314 vtkgdcmViewer jpeglossy1.dcm.XDCM #OK
 315 xmedcon jpeglossy1.dcm.XDCM #OK
 316
 317 #JPEG Baseline (Process 14)
 318 #--------------------------
 319 /home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-12-shoulder.dcm x;
 320 vtkgdcmViewer  MR-MONO2-12-shoulder.dcm.XDCM; #OK
 321 xmedcon MR-MONO2-12-shoulder.dcm.XDCM; #OK
 322
 323
 324 #fichier format ecat.
 325 #/home/jpr/JUNK/gdcmbin/bin/Write imageEcat.ecat r
 326
 327 #JPEG Lossy 8 bits
 328 #=================
 329 #JPEG Baseline (Process 1)
 330 #-------------------------
 331 # Bracco Files
 332 /home/jpr/JUNK/gdcmbin/bin/Write US.1.2.dcm x;
 333 echo "expected : A lot of Fragments (40), nb Frames = 40 ;-)";
 334 echo "expected  pixelType=8U SamplesPerPixel=3 PlanarConfiguration=0";
 335 echo "          PhotometricInterpretation=YBR_FULL_422";
 336 vtkgdcmViewer US.1.2.dcm.XDCM;  #OK
 337 xmedcon US.1.2.dcm.XDCM;  #OK
 338
 339 #Sequoia Acusson U11
 340 /home/jpr/JUNK/gdcmbin/bin/Write CLIP0001-Sequoia-U11.dcm x;
 341 vtkgdcmViewer CLIP0001-Sequoia-U11.dcm.XDCM; #OK
 342 xmedcon CLIP0001-Sequoia-U11.dcm.XDCM; #OK
 343
 344 #RLE Lossless
 345 #-------------
 346 /home/jpr/JUNK/gdcmbin/bin/Write canadaAloka.dcm x;
 347 echo "expected pixelType=8U SamplesPerPixel=1";
 348 echo "         PlanarConfiguration=0 PhotometricInterpretation=MONOCHROME2";
 349 echo "         nb Frames (DIMZ) : 1";
 350 vtkgdcmViewer canadaAloka.dcm.XDCM; # OK
 351 xmedcon canadaAloka.dcm.XDCM; #OK
 352
 353 /home/jpr/JUNK/gdcmbin/bin/Write jpeglossy1.dcm x; # equal to ???
 354 vtkgdcmViewer jpeglossy1.dcm.XDCM; #OK
 355 xmedcon jpeglossy1.dcm.XDCM; #OK
 356
 357 /home/jpr/JUNK/gdcmbin/bin/Write FMAG0001.dcm x;
 358 echo "expected pixelType=8U SamplesPerPixel=3";
 359 echo "         PlanarConfiguration=1 PhotometricInterpretation=YBR_FULL";
 360 echo "         nb Frames (DIMZ) : 1";
 361 vtkgdcmViewer FMAG0001.dcm.XDCM; #OK
 362 xmedcon FMAG0001.dcm.XDCM; #OK
 363
 364 vtkgdcmViewer QMAG0001.dcm; #OK
 365 xmedcon QMAG0001.dcm; #original breaks xmedcon
 366                       #warning: Unknown PhotometricInterpretation
 367 /home/jpr/JUNK/gdcmbin/bin/Write QMAG0001.dcm x;
 368 echo "expected pixelType=8U SamplesPerPixel=3";
 369 echo "         PlanarConfiguration=1 PhotometricInterpretation=YBR_FULL";
 370 vtkgdcmViewer QMAG0001.dcm.XDCM; #OK
 371 xmedcon QMAG0001.dcm.XDCM; #OK
 372
 373 /home/jpr/JUNK/gdcmbin/bin/Write US-PAL-8-10x-echo.dcm x;
 374 echo "expected pixelType=8U SamplesPerPixel=1 PlanarConfiguration=0";
 375 echo "         PhotometricInterpretation=PALETTE COLOR";
 376 echo "         nb Frames (DIMZ): 10";
 377 echo "expected : Parsing 10 'single fragment' Segments";
 378 echo "           Reading 10 'single fragment' Segments (ouf!)";
 379 vtkgdcmViewer US-PAL-8-10x-echo.dcm.XDCM; #                       SEG FAULT
 380 xmedcon US-PAL-8-10x-echo.dcm.XDCM; #OK
 381
 382 /home/jpr/JUNK/gdcmbin/bin/Write 8BitsRunLengthGrayScale.dcm x;
 383 echo "expected : correct Gray image";
 384 vtkgdcmViewer 8BitsRunLengthGrayScale.dcm.XDCM; #OK
 385 xmedcon 8BitsRunLengthGrayScale.dcm.XDCM; #OK
 386
 387 /home/jpr/JUNK/gdcmbin/bin/Write 8BitsRunLengthColor.dcm x;
 388 echo "expected pixelType=8U SamplesPerPixel=1 PlanarConfiguration=2";
 389 echo "         PhotometricInterpretation=PALETTE COLOR";
 390 vtkgdcmViewer 8BitsRunLengthColor.dcm.XDCM;  #             SEG FAULT
 391 echo "WAS expected correct color image";
 392 xmedcon 8BitsRunLengthColor.dcm.XDCM;  #OK
 393
 394 #RLE 16 bits --> Try to find some more images
 395
 396 /home/jpr/JUNK/gdcmbin/bin/Write 16BitsRunLengthGrayScale.dcm x;
 397 echo "expected pixelType=16U SamplesPerPixel=1 PlanarConfiguration=0";
 398 echo "         PhotometricInterpretation=MONOCHROME2";
 399 vtkgdcmViewer 16BitsRunLengthGrayScale.dcm.XDCM;
 400 xmedcon 16BitsRunLengthGrayScale.dcm.XDCM; #OK
 401
 402 #Were supposed to be bugged
 403 #--------------------------
 404 #(break xmedcon)
 405 xmedcon 00191113.dcm; #No images found
 406 /home/jpr/JUNK/gdcmbin/bin/Write 00191113.dcm x;
 407 vtkgdcmViewer 00191113.dcm.XDCM; #OK
 408 xmedcon 00191113.dcm.XDCM; #OK
 409
 410 xmedcon DermaColorLossLess.dcm; #breaks xmedcon : No images found
 411 /home/jpr/JUNK/gdcmbin/bin/Write DermaColorLossLess.dcm x;
 412 xmedcon DermaColorLossLess.dcm.XDCM; #breaks xmedcon
 413 #Feb 02 19:33:16 log[2619]: warning: Tag with uneven length
 414 #Feb 02 19:33:16 log[2619]: warning: No transfer syntax found
 415 #Feb 02 19:33:16 log[2619]: error: No images found
 416 vtkgdcmViewer DermaColorLossLess.dcm.XDCM #OK
 417
 418 #Original breaks xmedcon, affimdcm complian ?!
 419 affimdcm filein=RadBWLossLess.dcm; #OK
 420 vtkgdcmViewer RadBWLossLess.dcm; #OK
 421 xmedcon RadBWLossLess.dcm; # breaks :error: No images found
 422 /home/jpr/JUNK/gdcmbin/bin/Write RadBWLossLess.dcm x;
 423 vtkgdcmViewer RadBWLossLess.dcm.XDCM; #OK
 424 xmedcon RadBWLossLess.dcm.XDCM; #error: No images found
 425
 426 #Known as BUGGED !
 427 #----------------
 428
 429 #Rectangular old 24 Bits image
 430 vtkgdcmViewer gdcm-RGB-LibIDORect.acr; # OK
 431 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-RGB-LibIDORect.acr x;
 432 vtkgdcmViewer gdcm-RGB-LibIDORect.acr.XDCM;
 433 xmedcon gdcm-RGB-LibIDORect.acr.XDCM; # breaks : large Bit Allocated (24)
 434 #TODO transform '24 bit images' into 8 bits + samples per pixel = 3
 435
 436 #MR GE GENESIS_SIGNA Palo Alto
 437 /home/jpr/JUNK/gdcmbin/bin/Write DicomSampleNastyGEImage.dcm x;
 438 echo " expected : warning uneven length (13) for 0008|103e";
 439 vtkgdcmViewer DicomSampleNastyGEImage.dcm.XDCM; #OK
 440 xmedcon DicomSampleNastyGEImage.dcm.XDCM; #OK
 441
 442 #MR Philips NTSCAN Hop. Neuro Lyon
 443 /home/jpr/JUNK/gdcmbin/bin/gdcmTests  PrintDocument philipsMR-lossy.ima #OK
 444 xmedcon philipsMR-lossy.ima;    #original breaks xmedcon
 445 vtkgdcmViewer philipsMR-lossy.ima;          #Original OK
 446 /home/jpr/JUNK/gdcmbin/bin/Write philipsMR-lossy.ima x;
 447 echo "WAS expected : 'Bogus Huffman table definition' on philipsMR-lossy.ima";
 448 echo "IS  expected : 'JERR_BAD_HUFF_TABLE sym 16 (>15)' but the show goes on";
 449 vtkgdcmViewer philipsMR-lossy.ima.XDCM;  #      BLACK IMAGE
 450 xmedcon philipsMR-lossy.ima.XDCM; #OK
 451
 452 #CT Siemens Hop. Salengro Lille
 453 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-LossLess3a.dcm x;
 454 echo "expected : wrong sequence delimiter (b00c,0eb6) at end of pixels";
 455 echo "xmedcon says 'error: Unexpected end of file'";
 456 vtkgdcmViewer gdcm-JPEG-LossLess3a.dcm.XDCM;  #OK; needs 'R' for display
 457 xmedcon gdcm-JPEG-LossLess3a.dcm.XDCM; #OK
 458
 459 #CR Philips Thoravision Hop Cardio Lyon
 460 affimdcm filein=gdcm-JPEG-LossLessThoravision.dcm; # OK, wrong image as usual
 461 xmedcon gdcm-JPEG-LossLessThoravision.dcm;        #original seg faults xmedcon
 462 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-LossLessThoravision.dcm x; #breaks ;
 463 echo "expected : 147 fragments,length : 29860 + 145*32760 + 14416";
 464 echo "breaks xmedcom, breaks e-film";
 465 echo "WAS expected : hashed image -with jLBJpeg-";
 466 echo "IS  expected : Seg Fault";
 467 xmedcon gdcm-JPEG-LossLessThoravision.dcm.XDCM; # NOT CHECKED
 468
 469 #MR Picker ST. ANTHONY HOSPITAL
 470 /home/jpr/JUNK/gdcmbin/bin/Write MR.6799.1.dcm x;  #equal to ???
 471 echo "OK; DICOM Image with NO Preamble";
 472 vtkgdcmViewer MR.6799.1.dcm.XDCM; #OK
 473 xmedcon MR.6799.1.dcm.XDCM; #OK
 474
 475 #Segmented Palette Color LUT Data
 476 xmedcon gdcm-US-ALOKA-16.dcm; #breaks # Missing CLUT
 477 vtkgdcmViewer gdcm-US-ALOKA-16.dcm3; #OK
 478 /home/jpr/JUNK/gdcmbin/bin/Write gdcm-US-ALOKA-16.dcm x;
 479 echo "expected  pixelType=16U SamplesPerPixel=1 PlanarConfiguration=0";
 480 echo "          PhotometricInterpretation=PALETTE COLOR";
 481 echo "expected : Gray image since 'Segmented xxx Palette Color LUT Data' not yet taken into account";
 482 echo "neither e-film nor DicomWorks deals with the color"
 483 echo "breaks xmedcom";
 484 echo "breaks vtkgdcmViewer (bad result : 24 bits expected; 16 found in Pixels area)";
 485 vtkgdcmViewer gdcm-US-ALOKA-16.dcm.XDCM; #OK
 486 xmedcon gdcm-US-ALOKA-16.dcm.XDCM; #breaks
 487 #Feb 03 13:40:19 log[26999]: error: Missing CLUT
 488 #Feb 03 13:40:19 log[26999]: error: No images found
 489
 490 # bugged Siemens 'Leonardo' image
 491 /home/jpr/JUNK/gdcmbin/bin/Write 8078283Leonardo.dcm x;
 492 xmedcon 8078283Leonardo.dcm.XDCM; #OK
 493
 494 #CT McTwin Elscint C.H.R.U  LILLE  C.HURIEZ
 495  xmedcon MxTwinLossLess.dcm; #breaks No images found
 496  vtkgdcmViewer MxTwinLossLess.dcm; #OK
 497  /home/jpr/JUNK/gdcmbin/bin/Write MxTwinLossLess.dcm x;
 498  vtkgdcmViewer MxTwinLossLess.dcm.XDCM;  #OK
 499  xmedcon MxTwinLossLess.dcm.XDCM #breaks
 500
 501 # MRI image from VPRO burned CD
 502 vtkgdcmViewer mriThruVPRO.dcm;                               # Tasteless SHIT
 503 xmedcon mriThruVPRO.dcm;                         # pas mieux
 504 /home/jpr/JUNK/gdcmbin/bin/Write mriThruVPRO.dcm x;
 505 vtkgdcmViewer mriThruVPRO.dcm.XDCM;
 506 echo "expected : tasteless SHIT !"
 507 echo "breaks Siemens Leonardo viewer . JPEG encoding is bugged?"
 508
 509 # gdcm made Theralys image
 510 # due to H table, a SeQuence is tagged with 0 length
 511 # when using gdcmFile::WriteDcmXXX
 512 xmedcon fromTheralys.dcm; # Original breaks xmedcon
 513 /home/jpr/JUNK/gdcmbin/bin/Write fromTheralys.dcm x;
 514 vtkgdcmViewer fromTheralys.dcm.XDCM; # OK
 515 xmedcon fromTheralys.dcm.XDCM; # OK